Wall clock time and date at job start Tue Mar 31 2020 20:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86795 * 120.00324 * 2 1 4 4 H 1.48502 * 109.47284 * 274.04761 * 3 2 1 5 5 H 1.48503 * 109.47021 * 34.04842 * 3 2 1 6 6 H 1.48503 * 109.47524 * 154.04762 * 3 2 1 7 7 C 1.38813 * 120.00110 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00233 * 196.66312 * 7 2 1 9 9 N 1.36940 * 119.99816 * 16.65977 * 7 2 1 10 10 C 1.47512 * 118.75835 * 26.74779 * 9 7 2 11 11 C 1.53570 * 111.02810 * 138.35231 * 10 9 7 12 12 C 1.51544 * 109.57886 * 320.02352 * 11 10 9 13 13 O 1.42148 * 108.75805 * 91.40307 * 12 11 10 14 14 C 1.38020 * 119.43665 * 272.76726 * 13 12 11 15 15 H 1.08996 * 109.46998 * 303.42886 * 14 13 12 16 16 C 1.52998 * 109.46987 * 183.43036 * 14 13 12 17 17 N 1.46501 * 109.47237 * 64.99803 * 16 14 13 18 18 C 1.34779 * 120.00285 * 179.97438 * 17 16 14 19 19 O 1.21274 * 119.99641 * 0.02562 * 18 17 16 20 20 C 1.50700 * 120.00012 * 180.02562 * 18 17 16 21 21 C 1.52995 * 109.47269 * 180.02562 * 20 18 17 22 22 C 1.54249 * 108.89781 * 296.40205 * 21 20 18 23 23 C 1.50551 * 108.48336 * 159.17541 * 22 21 20 24 24 C 1.54069 * 112.41462 * 94.26908 * 23 22 21 25 25 C 1.54072 * 112.81461 * 318.27256 * 24 23 22 26 26 C 1.50471 * 112.49583 * 318.29223 * 25 24 23 27 27 C 1.45539 * 108.89884 * 173.60671 * 21 20 18 28 28 C 1.45119 * 118.75570 * 206.72827 * 9 7 2 29 29 H 0.97004 * 120.00128 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.16574 * 258.75108 * 10 9 7 31 31 H 1.08993 * 109.16265 * 18.00291 * 10 9 7 32 32 H 1.08998 * 109.45357 * 199.99313 * 11 10 9 33 33 H 1.08996 * 109.45560 * 80.05132 * 11 10 9 34 34 H 1.08994 * 109.59011 * 331.61876 * 12 11 10 35 35 H 1.09005 * 109.58743 * 211.18108 * 12 11 10 36 36 H 1.09001 * 109.47525 * 184.99960 * 16 14 13 37 37 H 1.09005 * 109.47301 * 305.00605 * 16 14 13 38 38 H 0.97003 * 119.99547 * 0.02562 * 17 16 14 39 39 H 1.08999 * 109.47422 * 300.00296 * 20 18 17 40 40 H 1.09000 * 109.46874 * 60.00176 * 20 18 17 41 41 H 1.09004 * 108.86872 * 55.00286 * 21 20 18 42 42 H 1.08999 * 109.62165 * 278.97409 * 22 21 20 43 43 H 1.08998 * 109.62397 * 39.54670 * 22 21 20 44 44 H 1.08992 * 108.92705 * 333.50923 * 23 22 21 45 45 H 1.09003 * 108.83635 * 214.95937 * 23 22 21 46 46 H 1.08997 * 108.81441 * 197.42087 * 24 23 22 47 47 H 1.08993 * 108.81605 * 79.13311 * 24 23 22 48 48 H 1.08992 * 108.87793 * 197.51038 * 25 24 23 49 49 H 1.09001 * 108.79448 * 79.01053 * 25 24 23 50 50 H 1.09008 * 109.62947 * 334.43652 * 26 25 24 51 51 H 1.09002 * 109.78786 * 213.95991 * 26 25 24 52 52 H 1.08998 * 108.89335 * 303.44631 * 27 21 20 53 53 H 1.09004 * 108.89351 * 62.03181 * 27 21 20 54 54 H 1.09003 * 109.46433 * 149.28495 * 28 9 7 55 55 H 1.09005 * 109.46405 * 29.32879 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4122 2.0958 -1.3966 5 1 1.4931 2.6264 0.7839 6 1 3.5880 1.4169 0.6127 7 6 2.0102 -1.2021 -0.0005 8 1 3.0562 -1.2219 0.2676 9 7 1.3686 -2.3630 -0.3411 10 6 0.2015 -2.2914 -1.2403 11 6 0.2329 -3.4255 -2.2753 12 6 1.6539 -3.6319 -2.7596 13 8 2.2783 -4.6116 -1.9405 14 6 2.9062 -4.2211 -0.7751 15 1 3.6649 -3.4729 -1.0043 16 6 3.5686 -5.4354 -0.1212 17 7 4.6380 -5.9348 -0.9892 18 6 5.3651 -7.0061 -0.6147 19 8 5.1337 -7.5570 0.4407 20 6 6.4655 -7.5193 -1.5073 21 6 7.1278 -8.7337 -0.8536 22 6 7.7944 -8.2898 0.4647 23 6 7.9840 -9.5030 1.3358 24 6 9.3826 -10.1290 1.1749 25 6 9.8510 -10.1759 -0.2922 26 6 8.7516 -10.5847 -1.2347 27 6 8.0821 -9.3105 -1.7889 28 6 1.8629 -3.6173 0.1961 29 1 -0.4850 0.8401 0.0004 30 1 -0.7110 -2.3712 -0.6495 31 1 0.2086 -1.3333 -1.7600 32 1 -0.4042 -3.1638 -3.1201 33 1 -0.1316 -4.3450 -1.8173 34 1 2.2036 -2.6933 -2.6903 35 1 1.6411 -3.9749 -3.7942 36 1 3.9882 -5.1457 0.8422 37 1 2.8254 -6.2190 0.0269 38 1 4.8233 -5.4939 -1.8331 39 1 6.0463 -7.8093 -2.4708 40 1 7.2084 -6.7356 -1.6554 41 1 6.3611 -9.4752 -0.6292 42 1 8.7619 -7.8357 0.2508 43 1 7.1538 -7.5704 0.9747 44 1 7.2322 -10.2474 1.0737 45 1 7.8450 -9.2136 2.3774 46 1 9.3605 -11.1448 1.5694 47 1 10.0979 -9.5448 1.7537 48 1 10.6718 -10.8878 -0.3777 49 1 10.2108 -9.1874 -0.5777 50 1 8.0140 -11.1829 -0.6995 51 1 9.1679 -11.1668 -2.0569 52 1 7.5631 -9.5586 -2.7147 53 1 8.8549 -8.5727 -2.0047 54 1 1.0327 -4.3134 0.3158 55 1 2.3293 -3.4388 1.1650 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150379406.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:04 Heat of formation + Delta-G solvation = -103.534383 kcal Electronic energy + Delta-G solvation = -30567.832177 eV Core-core repulsion = 26603.524904 eV Total energy + Delta-G solvation = -3964.307273 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.23408 -40.45614 -39.30076 -36.99901 -35.88965 -34.55451 -33.64247 -33.41007 -32.88507 -30.52159 -28.98829 -27.23248 -26.90885 -25.63163 -24.77652 -23.84235 -22.29432 -21.56812 -21.24945 -20.88177 -20.10730 -18.87359 -18.02082 -17.65073 -17.33671 -16.81460 -16.64291 -16.47199 -16.34162 -15.79212 -15.53958 -15.37022 -15.33345 -14.86393 -14.65276 -14.35770 -14.01540 -13.90650 -13.75927 -13.61232 -13.56429 -13.18537 -13.14988 -12.99326 -12.94811 -12.79153 -12.49408 -12.43973 -12.41006 -12.07402 -11.78111 -11.62864 -11.48643 -11.42686 -11.37334 -11.32365 -11.21371 -11.15246 -10.93616 -10.65718 -10.55776 -10.27407 -9.98846 -8.73772 -7.91280 -5.38975 1.44694 1.46187 1.55097 1.76681 2.28085 2.48971 2.76364 3.23647 3.55281 3.70108 3.78432 3.85054 4.03615 4.09838 4.14075 4.21060 4.25509 4.26936 4.34622 4.40696 4.48488 4.51778 4.57318 4.58286 4.60832 4.66928 4.73340 4.74745 4.82661 4.85321 4.90078 4.91590 4.99616 5.12416 5.13386 5.17512 5.21500 5.23745 5.26906 5.36782 5.38688 5.41862 5.43942 5.44622 5.49268 5.59513 5.59652 5.66531 5.69232 5.72138 6.33917 6.66362 6.74351 7.12379 7.36655 7.84401 8.26227 9.14507 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.019662 B = 0.002117 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.744022 B =13223.791312 C =13863.074852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.046 4.046 3 Si 0.965 3.035 4 H -0.283 1.283 5 H -0.297 1.297 6 H -0.268 1.268 7 C -0.270 4.270 8 H 0.067 0.933 9 N -0.605 5.605 10 C 0.186 3.814 11 C -0.164 4.164 12 C 0.091 3.909 13 O -0.391 6.391 14 C 0.088 3.912 15 H 0.045 0.955 16 C 0.144 3.856 17 N -0.717 5.717 18 C 0.505 3.495 19 O -0.579 6.579 20 C -0.134 4.134 21 C -0.063 4.063 22 C -0.110 4.110 23 C -0.112 4.112 24 C -0.115 4.115 25 C -0.117 4.117 26 C -0.116 4.116 27 C -0.112 4.112 28 C 0.123 3.877 29 H 0.250 0.750 30 H -0.007 1.007 31 H 0.044 0.956 32 H 0.085 0.915 33 H 0.059 0.941 34 H 0.040 0.960 35 H 0.110 0.890 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.413 0.587 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.053 0.947 42 H 0.067 0.933 43 H 0.050 0.950 44 H 0.050 0.950 45 H 0.043 0.957 46 H 0.058 0.942 47 H 0.058 0.942 48 H 0.064 0.936 49 H 0.063 0.937 50 H 0.055 0.945 51 H 0.073 0.927 52 H 0.070 0.930 53 H 0.071 0.929 54 H 0.041 0.959 55 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.566 -18.640 -7.723 26.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.241 4.241 3 Si 0.793 3.207 4 H -0.210 1.210 5 H -0.224 1.224 6 H -0.193 1.193 7 C -0.400 4.400 8 H 0.085 0.915 9 N -0.327 5.327 10 C 0.061 3.939 11 C -0.203 4.203 12 C 0.016 3.984 13 O -0.310 6.310 14 C 0.027 3.973 15 H 0.063 0.937 16 C 0.019 3.981 17 N -0.369 5.369 18 C 0.294 3.706 19 O -0.460 6.460 20 C -0.173 4.173 21 C -0.082 4.082 22 C -0.148 4.148 23 C -0.150 4.150 24 C -0.153 4.153 25 C -0.154 4.154 26 C -0.154 4.154 27 C -0.149 4.149 28 C -0.005 4.005 29 H 0.059 0.941 30 H 0.011 0.989 31 H 0.062 0.938 32 H 0.104 0.896 33 H 0.078 0.922 34 H 0.059 0.941 35 H 0.127 0.873 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.249 0.751 39 H 0.132 0.868 40 H 0.131 0.869 41 H 0.072 0.928 42 H 0.086 0.914 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.062 0.938 46 H 0.076 0.924 47 H 0.077 0.923 48 H 0.083 0.917 49 H 0.082 0.918 50 H 0.074 0.926 51 H 0.092 0.908 52 H 0.089 0.911 53 H 0.090 0.910 54 H 0.059 0.941 55 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 17.253 -19.071 -7.004 26.653 hybrid contribution -0.432 1.845 0.380 1.933 sum 16.821 -17.225 -6.624 24.971 Atomic orbital electron populations 1.70235 1.06664 1.25869 1.55163 1.25793 0.95987 1.01503 1.00863 0.85294 0.78215 0.79682 0.77500 1.20990 1.22390 1.19304 1.19500 0.92897 0.86045 1.41555 0.91511 1.44032 1.33773 1.02072 1.52858 1.20754 0.87409 0.96051 0.89721 1.22626 0.98855 0.99149 0.99708 1.22079 0.91463 0.91495 0.93409 1.86102 1.72535 1.37858 1.34519 1.22257 0.93957 0.94463 0.86672 0.93681 1.21099 0.89121 0.94703 0.93217 1.45967 1.34862 1.31746 1.24290 1.21369 0.83073 0.79187 0.86983 1.90669 1.70219 1.58885 1.26179 1.21911 0.96111 1.00125 0.99162 1.19807 0.97486 0.95608 0.95300 1.21413 0.99975 0.97712 0.95653 1.21234 0.97359 0.97419 0.98990 1.21919 0.95817 1.00396 0.97153 1.21334 0.98193 1.01855 0.94033 1.21307 0.97930 0.97254 0.98902 1.20526 0.98691 0.97500 0.98176 1.21571 0.95769 0.87707 0.95486 0.94086 0.98910 0.93763 0.89621 0.92185 0.94118 0.87266 0.90807 0.92012 0.75142 0.86789 0.86903 0.92808 0.91424 0.93141 0.93154 0.93822 0.92363 0.92337 0.91696 0.91844 0.92648 0.90818 0.91149 0.91001 0.94096 0.93284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.45 11.12 21.65 0.24 -54.21 16 2 C -0.05 -2.49 4.85 84.86 0.41 -2.08 16 3 Si 0.96 43.93 29.58 68.60 2.03 45.96 16 4 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 5 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.27 -14.37 9.45 84.03 0.79 -13.58 16 8 H 0.07 3.48 7.88 -2.91 -0.02 3.45 16 9 N -0.61 -29.48 2.22 -698.15 -1.55 -31.03 16 10 C 0.19 8.80 4.71 86.38 0.41 9.20 16 11 C -0.16 -5.88 5.79 30.31 0.18 -5.70 16 12 C 0.09 2.94 6.37 71.50 0.46 3.40 16 13 O -0.39 -12.72 9.38 -117.93 -1.11 -13.83 16 14 C 0.09 2.95 2.68 31.21 0.08 3.04 16 15 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 16 C 0.14 4.24 5.34 86.38 0.46 4.70 16 17 N -0.72 -17.30 5.49 -463.06 -2.54 -19.84 16 18 C 0.51 12.41 7.32 87.66 0.64 13.05 16 19 O -0.58 -18.88 14.04 -3.01 -0.04 -18.92 16 20 C -0.13 -2.09 5.10 29.85 0.15 -1.94 16 21 C -0.06 -1.07 1.39 -12.65 -0.02 -1.09 16 22 C -0.11 -2.16 4.62 30.22 0.14 -2.02 16 23 C -0.11 -2.17 5.32 30.16 0.16 -2.00 16 24 C -0.12 -1.69 5.85 31.32 0.18 -1.51 16 25 C -0.12 -1.41 5.32 30.14 0.16 -1.25 16 26 C -0.12 -1.40 5.61 30.19 0.17 -1.23 16 27 C -0.11 -1.34 4.44 28.73 0.13 -1.21 16 28 C 0.12 5.05 5.12 87.25 0.45 5.49 16 29 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 30 H -0.01 -0.39 8.03 -2.39 -0.02 -0.41 16 31 H 0.04 2.32 6.46 -2.39 -0.02 2.31 16 32 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 33 H 0.06 2.14 8.01 -2.39 -0.02 2.12 16 34 H 0.04 1.50 7.40 -2.39 -0.02 1.48 16 35 H 0.11 2.73 8.14 -2.38 -0.02 2.71 16 36 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 38 H 0.41 8.17 8.46 -92.71 -0.78 7.38 16 39 H 0.11 1.31 8.05 -2.39 -0.02 1.29 16 40 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.05 1.15 7.26 -2.39 -0.02 1.14 16 42 H 0.07 1.15 6.96 -2.39 -0.02 1.13 16 43 H 0.05 1.29 5.76 -2.39 -0.01 1.28 16 44 H 0.05 1.05 6.63 -2.39 -0.02 1.03 16 45 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 47 H 0.06 0.82 8.14 -2.39 -0.02 0.81 16 48 H 0.06 0.66 8.14 -2.39 -0.02 0.65 16 49 H 0.06 0.74 6.62 -2.39 -0.02 0.73 16 50 H 0.05 0.79 6.98 -2.38 -0.02 0.78 16 51 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 52 H 0.07 0.71 8.04 -2.39 -0.02 0.69 16 53 H 0.07 0.74 7.46 -2.38 -0.02 0.72 16 54 H 0.04 1.68 8.11 -2.39 -0.02 1.66 16 55 H 0.05 2.05 7.98 -2.38 -0.02 2.03 16 Total: -1.00 -66.11 406.39 2.05 -64.07 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: 0.07 Total: 22.53 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: 4.95 Total: 5.28 kcal Atomic # 7 Polarization: -101.23 SS G_CDS: -3.85 Total: -105.08 kcal Atomic # 8 Polarization: -31.60 SS G_CDS: -1.15 Total: -32.75 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -66.11 2.05 -64.07 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150379406.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.466 kcal (2) G-P(sol) polarization free energy of solvation -66.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds