Wall clock time and date at job start Tue Mar 31 2020 21:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 113.99658 * 2 1 4 4 C 1.52998 * 109.47393 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47321 * 180.32228 * 4 3 2 6 6 N 1.46497 * 109.45042 * 303.93884 * 5 4 3 7 7 C 1.34775 * 120.00211 * 298.20080 * 6 5 4 8 8 O 1.21281 * 120.00168 * 4.97602 * 7 6 5 9 9 C 1.50702 * 120.00122 * 184.97537 * 7 6 5 10 10 C 1.53779 * 113.61346 * 277.49668 * 9 7 6 11 11 C 1.53781 * 87.08373 * 220.01997 * 10 9 7 12 12 C 1.53003 * 113.61331 * 270.88547 * 11 10 9 13 13 C 1.52996 * 113.69305 * 139.99178 * 11 10 9 14 14 C 1.53782 * 87.08032 * 25.43175 * 11 10 9 15 15 C 1.53034 * 109.46129 * 63.90885 * 5 4 3 16 16 C 1.53198 * 109.31198 * 181.38523 * 15 5 4 17 17 N 1.46931 * 108.77625 * 305.36263 * 16 15 5 18 18 C 1.36934 * 120.63147 * 233.58802 * 17 16 15 19 19 H 1.07998 * 119.99710 * 29.14450 * 18 17 16 20 20 C 1.38806 * 119.99729 * 208.87024 * 18 17 16 21 21 N 1.31619 * 120.00061 * 19.21975 * 20 18 17 22 22 Si 1.86804 * 120.00096 * 199.21745 * 20 18 17 23 23 H 1.48502 * 109.47151 * 94.97809 * 22 20 18 24 24 H 1.48497 * 109.47222 * 214.98362 * 22 20 18 25 25 H 1.48506 * 109.46757 * 334.98086 * 22 20 18 26 26 C 1.46930 * 118.73289 * 53.85916 * 17 16 15 27 27 C 1.53050 * 109.45783 * 183.97752 * 5 4 3 28 28 H 1.09008 * 109.46841 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47390 * 299.99639 * 1 2 3 30 30 H 1.09002 * 109.47062 * 60.00207 * 1 2 3 31 31 H 1.09009 * 109.47331 * 59.99934 * 3 2 1 32 32 H 1.08997 * 109.47444 * 300.00195 * 3 2 1 33 33 H 1.08999 * 109.47164 * 60.31803 * 4 3 2 34 34 H 1.08999 * 109.47125 * 300.32478 * 4 3 2 35 35 H 0.97000 * 120.00410 * 118.19484 * 6 5 4 36 36 H 1.08997 * 112.84906 * 48.80069 * 9 7 6 37 37 H 1.09006 * 113.61758 * 334.56664 * 10 9 7 38 38 H 1.08995 * 113.61854 * 105.47124 * 10 9 7 39 39 H 1.09003 * 109.46761 * 157.49006 * 12 11 10 40 40 H 1.08993 * 109.47274 * 277.49239 * 12 11 10 41 41 H 1.08998 * 109.46774 * 37.49726 * 12 11 10 42 42 H 1.08993 * 109.47240 * 322.46457 * 13 11 10 43 43 H 1.08998 * 109.47478 * 82.46881 * 13 11 10 44 44 H 1.09002 * 109.46894 * 202.46516 * 13 11 10 45 45 H 1.09000 * 113.61855 * 220.01961 * 14 11 10 46 46 H 1.08999 * 113.69150 * 89.12966 * 14 11 10 47 47 H 1.08999 * 109.49815 * 61.43515 * 15 5 4 48 48 H 1.08995 * 109.50149 * 301.33755 * 15 5 4 49 49 H 1.09001 * 109.58508 * 185.57537 * 16 15 5 50 50 H 1.08997 * 109.58765 * 65.15329 * 16 15 5 51 51 H 0.97008 * 120.00040 * 180.02562 * 21 20 18 52 52 H 1.09001 * 109.58448 * 65.93452 * 26 17 16 53 53 H 1.09005 * 109.58017 * 186.35119 * 26 17 16 54 54 H 1.08995 * 109.49265 * 298.56060 * 27 5 4 55 55 H 1.08993 * 109.49581 * 58.66314 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1848 0.0006 5 6 4.1575 2.5825 0.0088 6 7 3.6523 3.3481 -1.1336 7 6 3.8950 2.9237 -2.3895 8 8 4.4526 1.8626 -2.5740 9 6 3.4735 3.7677 -3.5647 10 6 1.9953 3.5920 -3.9506 11 6 2.4532 3.6462 -5.4177 12 6 2.4908 5.0623 -5.9960 13 6 1.7260 2.6527 -6.3259 14 6 3.8216 3.1447 -4.9270 15 6 3.7840 3.2994 1.3082 16 6 4.3798 4.7107 1.2975 17 7 5.8259 4.6119 1.0571 18 6 6.7173 5.2046 1.9111 19 1 6.4645 5.3303 2.9535 20 6 7.9479 5.6387 1.4380 21 7 8.1248 5.8366 0.1489 22 14 9.3530 5.9422 2.6310 23 1 10.2078 4.7303 2.7077 24 1 10.1650 7.0917 2.1573 25 1 8.8029 6.2459 3.9766 26 6 6.2971 3.8700 -0.1203 27 6 5.6802 2.4634 -0.0907 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6885 1.8464 0.8900 32 1 1.6885 1.8464 -0.8899 33 1 3.8578 0.6487 -0.8919 34 1 3.8563 0.6391 0.8879 35 1 3.1431 4.1603 -0.9861 36 1 3.7804 4.8092 -3.4696 37 1 1.5793 2.6277 -3.6585 38 1 1.3649 4.4319 -3.6587 39 1 3.1715 5.0892 -6.8469 40 1 1.4908 5.3485 -6.3214 41 1 2.8372 5.7578 -5.2316 42 1 1.5562 1.7223 -5.7841 43 1 0.7689 3.0742 -6.6328 44 1 2.3349 2.4537 -7.2078 45 1 4.6658 3.6236 -5.4231 46 1 3.9065 2.0583 -4.9014 47 1 4.1810 2.7433 2.1575 48 1 2.6990 3.3631 1.3897 49 1 4.2013 5.1900 2.2602 50 1 3.9166 5.2969 0.5038 51 1 8.9850 6.1396 -0.1818 52 1 5.9872 4.3890 -1.0273 53 1 7.3842 3.7943 -0.0935 54 1 6.0592 1.9153 0.7718 55 1 5.9445 1.9322 -1.0049 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151129135.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:17 Heat of formation + Delta-G solvation = -71.066285 kcal Electronic energy + Delta-G solvation = -32281.773441 eV Core-core repulsion = 28318.874090 eV Total energy + Delta-G solvation = -3962.899351 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -41.92119 -40.42170 -38.69621 -38.36384 -36.18241 -33.66819 -33.06351 -31.82558 -31.46471 -30.38139 -28.24638 -27.67293 -26.67414 -26.42045 -25.21322 -24.62081 -23.62030 -22.08220 -21.25326 -20.11815 -19.14849 -18.78395 -18.16875 -17.45999 -16.99114 -16.80962 -16.42551 -16.21049 -15.73705 -15.67508 -15.61254 -15.23503 -15.16162 -14.97675 -14.73684 -14.31121 -14.15411 -13.94017 -13.81910 -13.61775 -13.57627 -13.21126 -13.04651 -12.78233 -12.74983 -12.70108 -12.61658 -12.43110 -12.28053 -12.19088 -12.07444 -11.98631 -11.96019 -11.79416 -11.71323 -11.32885 -11.26300 -11.12217 -11.00057 -10.58697 -10.53543 -10.25881 -9.88796 -8.65710 -7.87521 -5.31854 1.44723 1.47728 1.55556 1.76372 2.35748 2.51104 2.82625 3.27579 3.49240 3.60656 3.66885 3.71244 3.77619 3.82867 3.99147 4.13740 4.18064 4.23166 4.35990 4.42518 4.45066 4.53192 4.54656 4.54976 4.59530 4.68709 4.73204 4.75910 4.78035 4.83830 4.87377 4.89495 4.93525 4.96675 5.01238 5.04935 5.05338 5.11962 5.16572 5.20014 5.23879 5.25405 5.30967 5.35086 5.46948 5.49912 5.61877 5.64444 5.68654 5.78114 6.27248 6.39000 6.74770 7.14886 7.43627 7.87373 8.39444 9.18172 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.009989 B = 0.003949 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2802.271149 B = 7088.777551 C = 9154.553619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.420 6.420 3 C 0.076 3.924 4 C -0.120 4.120 5 C 0.202 3.798 6 N -0.706 5.706 7 C 0.523 3.477 8 O -0.573 6.573 9 C -0.140 4.140 10 C -0.101 4.101 11 C -0.079 4.079 12 C -0.128 4.128 13 C -0.133 4.133 14 C -0.114 4.114 15 C -0.126 4.126 16 C 0.142 3.858 17 N -0.605 5.605 18 C -0.262 4.262 19 H 0.069 0.931 20 C -0.048 4.048 21 N -0.931 5.931 22 Si 0.959 3.041 23 H -0.292 1.292 24 H -0.296 1.296 25 H -0.264 1.264 26 C 0.198 3.802 27 C -0.138 4.138 28 H 0.095 0.905 29 H 0.053 0.947 30 H 0.047 0.953 31 H 0.066 0.934 32 H 0.049 0.951 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.407 0.593 36 H 0.115 0.885 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.059 0.941 40 H 0.073 0.927 41 H 0.056 0.944 42 H 0.049 0.951 43 H 0.070 0.930 44 H 0.057 0.943 45 H 0.064 0.936 46 H 0.075 0.925 47 H 0.071 0.929 48 H 0.097 0.903 49 H 0.060 0.940 50 H 0.026 0.974 51 H 0.247 0.753 52 H -0.001 1.001 53 H 0.035 0.965 54 H 0.053 0.947 55 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.842 -4.794 -7.706 21.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.340 6.340 3 C 0.000 4.000 4 C -0.158 4.158 5 C 0.116 3.884 6 N -0.357 5.357 7 C 0.310 3.690 8 O -0.453 6.453 9 C -0.161 4.161 10 C -0.139 4.139 11 C -0.079 4.079 12 C -0.185 4.185 13 C -0.190 4.190 14 C -0.152 4.152 15 C -0.165 4.165 16 C 0.017 3.983 17 N -0.329 5.329 18 C -0.392 4.392 19 H 0.086 0.914 20 C -0.243 4.243 21 N -0.577 5.577 22 Si 0.788 3.212 23 H -0.219 1.219 24 H -0.223 1.223 25 H -0.189 1.189 26 C 0.071 3.929 27 C -0.178 4.178 28 H 0.113 0.887 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.243 0.757 36 H 0.133 0.867 37 H 0.096 0.904 38 H 0.113 0.887 39 H 0.078 0.922 40 H 0.092 0.908 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.089 0.911 44 H 0.076 0.924 45 H 0.083 0.917 46 H 0.093 0.907 47 H 0.090 0.910 48 H 0.115 0.885 49 H 0.078 0.922 50 H 0.044 0.956 51 H 0.056 0.944 52 H 0.017 0.983 53 H 0.054 0.946 54 H 0.072 0.928 55 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -19.203 -5.622 -7.872 21.502 hybrid contribution 1.314 0.738 0.535 1.600 sum -17.889 -4.883 -7.337 19.942 Atomic orbital electron populations 1.22915 0.79521 1.03698 1.00855 1.87843 1.21553 1.29019 1.95587 1.22447 0.92750 0.84164 1.00667 1.21803 0.94433 0.96643 1.02959 1.19955 0.92095 0.90185 0.86164 1.46029 1.56070 1.28675 1.04932 1.20870 0.77450 0.85996 0.84638 1.90599 1.43767 1.24917 1.86006 1.22806 1.00525 1.00219 0.92564 1.22946 0.92527 1.02960 0.95451 1.21749 0.94754 0.96937 0.94501 1.21621 1.02769 0.93323 1.00813 1.21700 1.00388 0.97901 0.98998 1.22943 0.97996 1.00668 0.93631 1.22276 1.01467 0.97339 0.95459 1.21064 0.83724 0.94447 0.99054 1.44267 1.01250 1.59490 1.27881 1.19510 0.96885 1.32152 0.90653 0.91377 1.25740 1.02007 0.99513 0.97081 1.70205 1.23438 1.50095 1.13990 0.85368 0.79800 0.76644 0.79369 1.21927 1.22287 1.18863 1.20346 0.96702 0.88109 0.87697 1.22415 0.95824 0.98845 1.00741 0.88680 0.92814 0.93470 0.91607 0.93320 0.91815 0.91154 0.75654 0.86665 0.90362 0.88737 0.92185 0.90802 0.92464 0.93206 0.91119 0.92378 0.91718 0.90685 0.90995 0.88472 0.92166 0.95624 0.94379 0.98342 0.94613 0.92792 0.92594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 113.37 1.25 1.70 16 2 O -0.42 -11.08 10.70 -148.98 -1.59 -12.68 16 3 C 0.08 1.88 5.48 71.98 0.39 2.27 16 4 C -0.12 -3.66 4.37 30.59 0.13 -3.53 16 5 C 0.20 6.50 0.35 3.63 0.00 6.50 16 6 N -0.71 -20.52 3.15 -422.80 -1.33 -21.85 16 7 C 0.52 16.46 6.69 87.66 0.59 17.05 16 8 O -0.57 -22.33 12.18 -3.03 -0.04 -22.36 16 9 C -0.14 -3.43 3.80 -11.01 -0.04 -3.47 16 10 C -0.10 -1.83 6.75 31.12 0.21 -1.62 16 11 C -0.08 -1.40 1.39 -51.66 -0.07 -1.47 16 12 C -0.13 -1.92 9.07 71.98 0.65 -1.27 16 13 C -0.13 -2.07 9.19 71.98 0.66 -1.41 16 14 C -0.11 -2.79 6.56 31.12 0.20 -2.58 16 15 C -0.13 -3.72 4.72 30.67 0.14 -3.58 16 16 C 0.14 5.25 6.24 86.36 0.54 5.79 16 17 N -0.61 -29.37 2.98 -698.24 -2.08 -31.45 16 18 C -0.26 -14.18 9.56 84.03 0.80 -13.37 16 19 H 0.07 3.57 7.90 -2.91 -0.02 3.55 16 20 C -0.05 -2.67 4.85 84.86 0.41 -2.26 16 21 N -0.93 -55.71 11.38 21.65 0.25 -55.47 16 22 Si 0.96 45.22 29.59 68.60 2.03 47.25 16 23 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 24 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 25 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 26 C 0.20 9.77 5.08 86.51 0.44 10.21 16 27 C -0.14 -5.74 4.66 30.82 0.14 -5.60 16 28 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 29 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.07 1.38 6.49 -2.38 -0.02 1.36 16 32 H 0.05 1.16 7.47 -2.39 -0.02 1.15 16 33 H 0.06 2.33 6.25 -2.39 -0.01 2.31 16 34 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.41 10.04 7.33 -92.71 -0.68 9.36 16 36 H 0.12 2.75 7.66 -2.39 -0.02 2.73 16 37 H 0.08 1.52 7.92 -2.38 -0.02 1.50 16 38 H 0.09 1.32 8.10 -2.39 -0.02 1.31 16 39 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.06 0.90 7.34 -2.39 -0.02 0.88 16 42 H 0.05 0.84 7.95 -2.39 -0.02 0.82 16 43 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.06 1.60 8.10 -2.39 -0.02 1.58 16 46 H 0.07 2.13 7.39 -2.39 -0.02 2.11 16 47 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 48 H 0.10 2.13 6.46 -2.39 -0.02 2.12 16 49 H 0.06 2.17 7.93 -2.39 -0.02 2.15 16 50 H 0.03 0.91 6.97 -2.39 -0.02 0.89 16 51 H 0.25 14.45 8.31 -92.70 -0.77 13.68 16 52 H 0.00 -0.08 7.71 -2.39 -0.02 -0.10 16 53 H 0.04 2.06 6.18 -2.38 -0.01 2.05 16 54 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 55 H 0.06 2.49 6.25 -2.39 -0.01 2.48 16 Total: -1.00 -69.75 412.20 3.87 -65.88 By element: Atomic # 1 Polarization: 27.14 SS G_CDS: 0.18 Total: 27.32 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: 6.46 Total: 3.36 kcal Atomic # 7 Polarization: -105.61 SS G_CDS: -3.17 Total: -108.77 kcal Atomic # 8 Polarization: -33.41 SS G_CDS: -1.63 Total: -35.04 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -69.75 3.87 -65.88 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151129135.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.183 kcal (2) G-P(sol) polarization free energy of solvation -69.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds