Wall clock time and date at job start Tue Mar 31 2020 21:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 114.00009 * 2 1 4 4 C 1.53001 * 109.47056 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.46882 * 184.36962 * 4 3 2 6 6 N 1.46496 * 109.46290 * 303.07099 * 5 4 3 7 7 C 1.34774 * 120.00168 * 302.91183 * 6 5 4 8 8 O 1.21283 * 119.99653 * 355.29217 * 7 6 5 9 9 C 1.50700 * 120.00284 * 175.29824 * 7 6 5 10 10 C 1.52995 * 109.47190 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.47137 * 179.97438 * 10 9 7 12 12 C 1.52997 * 115.55145 * 34.32357 * 11 10 9 13 13 C 1.53008 * 117.49721 * 248.61741 * 11 10 9 14 14 C 1.53000 * 59.99980 * 252.50814 * 13 11 10 15 15 C 1.53049 * 109.44710 * 63.03739 * 5 4 3 16 16 C 1.53196 * 109.31118 * 181.37539 * 15 5 4 17 17 N 1.46925 * 108.77401 * 305.36594 * 16 15 5 18 18 C 1.36940 * 120.62534 * 233.62777 * 17 16 15 19 19 H 1.07998 * 120.00186 * 31.75259 * 18 17 16 20 20 C 1.38807 * 119.99779 * 211.74435 * 18 17 16 21 21 N 1.31619 * 120.00404 * 10.86430 * 20 18 17 22 22 Si 1.86800 * 119.99978 * 190.86210 * 20 18 17 23 23 H 1.48500 * 109.47429 * 90.00232 * 22 20 18 24 24 H 1.48507 * 109.47390 * 210.00350 * 22 20 18 25 25 H 1.48500 * 109.47034 * 330.00176 * 22 20 18 26 26 C 1.46914 * 118.74102 * 53.61150 * 17 16 15 27 27 C 1.53042 * 109.46030 * 183.09351 * 5 4 3 28 28 H 1.09001 * 109.46648 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46695 * 299.99401 * 1 2 3 30 30 H 1.08993 * 109.47398 * 59.99670 * 1 2 3 31 31 H 1.08993 * 109.47042 * 60.00357 * 3 2 1 32 32 H 1.09002 * 109.47119 * 300.00270 * 3 2 1 33 33 H 1.08998 * 109.47061 * 64.37894 * 4 3 2 34 34 H 1.08997 * 109.47059 * 304.37173 * 4 3 2 35 35 H 0.97006 * 119.99645 * 123.18952 * 6 5 4 36 36 H 1.09002 * 109.46850 * 299.99642 * 9 7 6 37 37 H 1.08997 * 109.47137 * 59.99733 * 9 7 6 38 38 H 1.09002 * 109.46708 * 299.99455 * 10 9 7 39 39 H 1.08997 * 109.47522 * 59.99695 * 10 9 7 40 40 H 1.09000 * 109.46928 * 85.58411 * 12 11 10 41 41 H 1.09007 * 109.47065 * 205.58580 * 12 11 10 42 42 H 1.09002 * 109.47202 * 325.58499 * 12 11 10 43 43 H 1.09002 * 117.49502 * 0.02562 * 13 11 10 44 44 H 1.09003 * 117.49613 * 145.01536 * 13 11 10 45 45 H 1.08999 * 117.49852 * 252.50695 * 14 13 11 46 46 H 1.09005 * 117.49565 * 107.48899 * 14 13 11 47 47 H 1.08992 * 109.49487 * 301.32823 * 15 5 4 48 48 H 1.09002 * 109.49564 * 61.42860 * 15 5 4 49 49 H 1.08998 * 109.57936 * 185.57967 * 16 15 5 50 50 H 1.08994 * 109.58400 * 65.15433 * 16 15 5 51 51 H 0.96999 * 120.00828 * 179.97438 * 21 20 18 52 52 H 1.09004 * 109.59122 * 186.60038 * 26 17 16 53 53 H 1.09006 * 109.70720 * 66.24681 * 26 17 16 54 54 H 1.08995 * 109.50379 * 298.58629 * 27 5 4 55 55 H 1.09007 * 109.49313 * 58.68001 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 4.1574 2.5782 0.1093 6 7 3.6737 3.4167 -0.9903 7 6 3.8570 3.0257 -2.2670 8 8 4.4964 2.0237 -2.5084 9 6 3.2676 3.8333 -3.3945 10 6 3.6198 3.1766 -4.7307 11 6 3.0208 3.9963 -5.8754 12 6 2.9777 5.5092 -5.6515 13 6 1.8759 3.3666 -6.6715 14 6 3.2635 3.4999 -7.3021 15 6 3.7595 3.2099 1.4453 16 6 4.3554 4.6182 1.5373 17 7 5.8058 4.5332 1.3181 18 6 6.6810 5.0675 2.2257 19 1 6.4261 5.0867 3.2750 20 6 7.8958 5.5844 1.7971 21 7 8.1202 5.7586 0.5119 22 14 9.2122 6.0328 3.0442 23 1 10.0829 4.8553 3.2901 24 1 10.0322 7.1533 2.5173 25 1 8.5682 6.4466 4.3167 26 6 6.2992 3.8638 0.1070 27 6 5.6816 2.4639 0.0310 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.6887 1.8463 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8622 0.7131 -0.9275 34 1 3.8522 0.5775 0.8473 35 1 3.2251 4.2554 -0.7995 36 1 2.1839 3.8739 -3.2845 37 1 3.6736 4.8445 -3.3680 38 1 4.7035 3.1358 -4.8409 39 1 3.2135 2.1656 -4.7570 40 1 3.9300 5.9479 -5.9497 41 1 2.1752 5.9422 -6.2489 42 1 2.7972 5.7154 -4.5965 43 1 1.5493 2.3685 -6.3794 44 1 1.0916 4.0302 -7.0357 45 1 3.3921 4.2511 -8.0814 46 1 3.8500 2.5893 -7.4253 47 1 2.6732 3.2695 1.5103 48 1 4.1405 2.5995 2.2641 49 1 4.1589 5.0341 2.5254 50 1 3.9073 5.2550 0.7747 51 1 8.9690 6.1201 0.2123 52 1 7.3852 3.7820 0.1513 53 1 6.0116 4.4383 -0.7736 54 1 6.0444 1.8605 0.8630 55 1 5.9631 1.9926 -0.9107 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151382128.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:20 Heat of formation + Delta-G solvation = -66.379025 kcal Electronic energy + Delta-G solvation = -31712.185868 eV Core-core repulsion = 27749.489772 eV Total energy + Delta-G solvation = -3962.696096 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.63553 -39.59890 -38.75294 -38.51949 -36.19505 -33.83332 -33.39289 -32.41677 -31.74477 -30.38427 -29.06512 -27.66820 -26.48453 -25.80428 -24.62185 -23.65146 -23.26465 -22.13968 -21.53119 -20.11500 -19.58310 -18.79179 -18.10372 -17.47087 -17.02226 -16.82397 -16.45042 -16.36200 -16.10088 -15.69140 -15.56607 -15.34444 -15.13502 -15.02051 -14.70386 -14.44693 -14.09285 -13.95203 -13.84862 -13.61822 -13.24442 -13.04783 -13.02810 -12.95025 -12.75539 -12.71014 -12.61758 -12.37236 -12.24339 -12.18846 -12.06186 -12.04280 -11.92773 -11.86052 -11.78551 -11.29666 -11.25644 -10.97329 -10.59021 -10.53667 -10.45089 -10.32363 -9.87192 -8.58676 -7.84562 -5.35732 1.45991 1.47879 1.55860 1.82024 2.33395 2.51314 2.82965 2.88317 3.31515 3.65501 3.72955 3.78807 3.84354 3.96725 4.03676 4.06318 4.13367 4.19384 4.26722 4.35908 4.41749 4.46463 4.48082 4.54857 4.55707 4.60305 4.67425 4.72750 4.77842 4.80950 4.84876 4.91544 4.93268 4.99521 5.01209 5.05553 5.08086 5.13771 5.15470 5.20143 5.21074 5.28191 5.30643 5.32323 5.37352 5.49376 5.52130 5.65601 5.72415 5.81425 6.27482 6.42940 6.75803 7.17928 7.45450 7.88713 8.41019 9.20324 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.008776 B = 0.003748 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3189.803434 B = 7468.215673 C = 9962.000434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.421 6.421 3 C 0.075 3.925 4 C -0.120 4.120 5 C 0.202 3.798 6 N -0.709 5.709 7 C 0.508 3.492 8 O -0.575 6.575 9 C -0.131 4.131 10 C -0.059 4.059 11 C -0.134 4.134 12 C -0.123 4.123 13 C -0.166 4.166 14 C -0.183 4.183 15 C -0.127 4.127 16 C 0.142 3.858 17 N -0.607 5.607 18 C -0.261 4.261 19 H 0.067 0.933 20 C -0.048 4.048 21 N -0.935 5.935 22 Si 0.964 3.036 23 H -0.290 1.290 24 H -0.296 1.296 25 H -0.265 1.265 26 C 0.197 3.803 27 C -0.138 4.138 28 H 0.095 0.905 29 H 0.053 0.947 30 H 0.047 0.953 31 H 0.067 0.933 32 H 0.049 0.951 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.408 0.592 36 H 0.119 0.881 37 H 0.104 0.896 38 H 0.047 0.953 39 H 0.059 0.941 40 H 0.053 0.947 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.091 0.909 44 H 0.107 0.893 45 H 0.102 0.898 46 H 0.086 0.914 47 H 0.098 0.902 48 H 0.069 0.931 49 H 0.060 0.940 50 H 0.028 0.972 51 H 0.247 0.753 52 H 0.038 0.962 53 H -0.002 1.002 54 H 0.049 0.951 55 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.383 -4.023 -8.632 21.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.340 6.340 3 C -0.001 4.001 4 C -0.159 4.159 5 C 0.116 3.884 6 N -0.361 5.361 7 C 0.296 3.704 8 O -0.455 6.455 9 C -0.170 4.170 10 C -0.097 4.097 11 C -0.134 4.134 12 C -0.180 4.180 13 C -0.203 4.203 14 C -0.220 4.220 15 C -0.166 4.166 16 C 0.017 3.983 17 N -0.331 5.331 18 C -0.391 4.391 19 H 0.085 0.915 20 C -0.244 4.244 21 N -0.580 5.580 22 Si 0.793 3.207 23 H -0.217 1.217 24 H -0.222 1.222 25 H -0.190 1.190 26 C 0.072 3.928 27 C -0.178 4.178 28 H 0.113 0.887 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.245 0.755 36 H 0.137 0.863 37 H 0.122 0.878 38 H 0.066 0.934 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.110 0.890 44 H 0.125 0.875 45 H 0.120 0.880 46 H 0.105 0.895 47 H 0.116 0.884 48 H 0.088 0.912 49 H 0.078 0.922 50 H 0.046 0.954 51 H 0.056 0.944 52 H 0.057 0.943 53 H 0.016 0.984 54 H 0.068 0.932 55 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.716 -4.816 -8.841 21.252 hybrid contribution 1.206 0.733 0.460 1.485 sum -17.510 -4.083 -8.381 19.837 Atomic orbital electron populations 1.22915 0.79503 1.03708 1.00876 1.87842 1.21570 1.29031 1.95593 1.22468 0.92705 0.84169 1.00762 1.21780 0.94418 0.96590 1.03071 1.19937 0.92254 0.89307 0.86888 1.46068 1.59971 1.24978 1.05073 1.21229 0.79298 0.85341 0.84529 1.90623 1.41512 1.28753 1.84641 1.21762 1.03479 1.00069 0.91724 1.20712 0.99796 0.97775 0.91374 1.21501 1.03632 0.96043 0.92222 1.21508 1.02015 0.91350 1.03106 1.23216 0.91620 1.02252 1.03172 1.23083 1.00070 1.03202 0.95634 1.22286 1.01386 0.97883 0.95034 1.21070 0.83651 0.94341 0.99233 1.44222 1.01144 1.64611 1.23100 1.19509 0.98610 1.31757 0.89265 0.91498 1.25880 1.01995 0.99170 0.97335 1.70147 1.24023 1.49299 1.14578 0.85315 0.79308 0.76964 0.79131 1.21726 1.22246 1.18952 1.20272 0.96864 0.88565 0.87145 1.22379 0.95929 0.99024 1.00516 0.88684 0.92822 0.93423 0.91497 0.93282 0.91769 0.91173 0.75496 0.86323 0.87770 0.93444 0.92218 0.92798 0.91246 0.90836 0.89010 0.87491 0.87964 0.89538 0.88425 0.91203 0.92191 0.95443 0.94384 0.94325 0.98409 0.93214 0.92538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 113.37 1.25 1.69 16 2 O -0.42 -10.96 10.70 -148.98 -1.59 -12.56 16 3 C 0.08 1.83 5.50 71.98 0.40 2.23 16 4 C -0.12 -3.64 4.32 30.59 0.13 -3.51 16 5 C 0.20 6.45 0.35 3.63 0.00 6.46 16 6 N -0.71 -20.02 3.36 -422.79 -1.42 -21.44 16 7 C 0.51 15.28 7.00 87.66 0.61 15.89 16 8 O -0.58 -21.93 12.26 -3.04 -0.04 -21.97 16 9 C -0.13 -2.86 4.71 29.85 0.14 -2.72 16 10 C -0.06 -1.38 4.69 30.59 0.14 -1.24 16 11 C -0.13 -2.49 2.47 -52.18 -0.13 -2.62 16 12 C -0.12 -2.01 9.49 71.98 0.68 -1.32 16 13 C -0.17 -2.61 9.82 30.60 0.30 -2.30 16 14 C -0.18 -3.22 9.97 30.60 0.31 -2.92 16 15 C -0.13 -3.71 4.72 30.68 0.14 -3.57 16 16 C 0.14 5.21 6.24 86.36 0.54 5.75 16 17 N -0.61 -29.41 2.98 -699.12 -2.09 -31.50 16 18 C -0.26 -14.10 9.58 84.03 0.80 -13.30 16 19 H 0.07 3.50 7.85 -2.91 -0.02 3.47 16 20 C -0.05 -2.70 5.04 84.86 0.43 -2.27 16 21 N -0.93 -55.73 11.09 21.65 0.24 -55.49 16 22 Si 0.96 45.07 29.57 68.60 2.03 47.10 16 23 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 24 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 25 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 26 C 0.20 9.77 4.99 86.37 0.43 10.20 16 27 C -0.14 -5.75 4.71 30.67 0.14 -5.61 16 28 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.07 1.38 6.27 -2.39 -0.01 1.37 16 32 H 0.05 1.14 7.46 -2.39 -0.02 1.12 16 33 H 0.06 2.31 6.22 -2.39 -0.01 2.30 16 34 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.41 9.70 7.18 -92.70 -0.67 9.04 16 36 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.10 2.17 6.45 -2.39 -0.02 2.16 16 38 H 0.05 1.36 8.10 -2.39 -0.02 1.34 16 39 H 0.06 1.51 7.86 -2.39 -0.02 1.49 16 40 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.07 0.92 7.90 -2.38 -0.02 0.91 16 42 H 0.07 1.12 5.59 -2.39 -0.01 1.11 16 43 H 0.09 1.46 8.05 -2.39 -0.02 1.44 16 44 H 0.11 1.35 8.05 -2.39 -0.02 1.33 16 45 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 47 H 0.10 2.12 6.35 -2.39 -0.02 2.11 16 48 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 49 H 0.06 2.15 7.93 -2.39 -0.02 2.13 16 50 H 0.03 0.95 6.88 -2.39 -0.02 0.93 16 51 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 52 H 0.04 2.24 6.14 -2.39 -0.01 2.23 16 53 H 0.00 -0.11 7.74 -2.38 -0.02 -0.13 16 54 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 55 H 0.06 2.52 6.26 -2.38 -0.01 2.50 16 Total: -1.00 -70.12 413.89 3.66 -66.47 By element: Atomic # 1 Polarization: 28.35 SS G_CDS: 0.20 Total: 28.55 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: 6.33 Total: 0.83 kcal Atomic # 7 Polarization: -105.16 SS G_CDS: -3.26 Total: -108.43 kcal Atomic # 8 Polarization: -32.89 SS G_CDS: -1.63 Total: -34.52 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -70.12 3.66 -66.47 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151382128.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.087 kcal (2) G-P(sol) polarization free energy of solvation -70.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds