Wall clock time and date at job start Tue Mar 31 2020 22:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.36939 * 120.00129 * 2 1 4 4 H 1.08001 * 120.00468 * 190.96230 * 3 2 1 5 5 C 1.38820 * 119.99835 * 10.95895 * 3 2 1 6 6 N 1.31623 * 119.99657 * 12.56900 * 5 3 2 7 7 Si 1.86789 * 120.00046 * 192.56798 * 5 3 2 8 8 H 1.48503 * 109.46962 * 90.00251 * 7 5 3 9 9 H 1.48502 * 109.47227 * 210.00036 * 7 5 3 10 10 H 1.48504 * 109.47559 * 330.00177 * 7 5 3 11 11 C 1.46507 * 120.00469 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.47086 * 84.70730 * 11 2 1 13 13 H 1.09001 * 109.57969 * 301.50997 * 12 11 2 14 14 C 1.53192 * 109.70426 * 61.86594 * 12 11 2 15 15 C 1.53035 * 109.31139 * 174.49201 * 14 12 11 16 16 C 1.53036 * 109.53918 * 298.63624 * 15 14 12 17 17 C 1.53191 * 109.31322 * 61.36238 * 16 15 14 18 18 N 1.46922 * 108.78029 * 305.36490 * 17 16 15 19 19 C 1.34769 * 120.63579 * 233.58478 * 18 17 16 20 20 O 1.21276 * 120.00074 * 175.01066 * 19 18 17 21 21 C 1.50706 * 119.99817 * 355.01580 * 19 18 17 22 22 C 1.52995 * 109.46972 * 179.97438 * 21 19 18 23 23 H 1.08993 * 110.27951 * 55.62978 * 22 21 19 24 24 C 1.54947 * 110.30936 * 177.83361 * 22 21 19 25 25 C 1.55302 * 100.94194 * 155.35686 * 24 22 21 26 26 C 1.53001 * 110.84671 * 207.67477 * 25 24 22 27 27 C 1.53001 * 111.02365 * 84.13593 * 25 24 22 28 28 C 1.54378 * 102.25626 * 325.86522 * 25 24 22 29 29 O 1.43238 * 107.58830 * 21.35637 * 28 25 24 30 30 H 1.09009 * 109.46950 * 174.73214 * 1 2 3 31 31 H 1.08999 * 109.47257 * 294.72956 * 1 2 3 32 32 H 1.09004 * 109.47571 * 54.73481 * 1 2 3 33 33 H 0.96998 * 119.99764 * 179.97438 * 6 5 3 34 34 H 1.09004 * 109.46642 * 324.70978 * 11 2 1 35 35 H 1.09000 * 109.46937 * 204.70937 * 11 2 1 36 36 H 1.09008 * 109.49487 * 294.44461 * 14 12 11 37 37 H 1.08993 * 109.49493 * 54.53962 * 14 12 11 38 38 H 1.08998 * 109.46013 * 178.60909 * 15 14 12 39 39 H 1.09004 * 109.46058 * 58.65818 * 15 14 12 40 40 H 1.09008 * 109.49679 * 301.41216 * 16 15 14 41 41 H 1.09000 * 109.49805 * 181.31896 * 16 15 14 42 42 H 1.09003 * 109.58213 * 65.15945 * 17 16 15 43 43 H 1.09000 * 109.58659 * 185.43514 * 17 16 15 44 44 H 1.09001 * 109.46623 * 299.99468 * 21 19 18 45 45 H 1.09003 * 109.46920 * 59.99325 * 21 19 18 46 46 H 1.08998 * 111.12588 * 273.27480 * 24 22 21 47 47 H 1.08999 * 111.12459 * 37.43537 * 24 22 21 48 48 H 1.09000 * 109.47050 * 174.28666 * 26 25 24 49 49 H 1.09001 * 109.47530 * 294.28743 * 26 25 24 50 50 H 1.08998 * 109.47504 * 54.28789 * 26 25 24 51 51 H 1.08997 * 109.46939 * 305.61393 * 27 25 24 52 52 H 1.09006 * 109.47054 * 65.61132 * 27 25 24 53 53 H 1.09002 * 109.47277 * 185.61112 * 27 25 24 54 54 H 1.08998 * 109.83277 * 261.84762 * 28 25 24 55 55 H 1.08998 * 109.83173 * 140.87244 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.2149 1.1945 -0.1779 5 6 1.4745 2.3772 0.2286 6 7 0.2406 2.3569 0.6862 7 14 2.3172 4.0087 -0.1133 8 1 2.0541 4.4173 -1.5166 9 1 1.7870 5.0430 0.8110 10 1 3.7805 3.8631 0.0937 11 6 2.1975 -1.2687 0.0006 12 6 2.3373 -1.7776 -1.4356 13 1 1.3484 -1.9051 -1.8758 14 6 3.1425 -0.7714 -2.2639 15 6 3.3947 -1.3504 -3.6579 16 6 4.2108 -2.6392 -3.5369 17 6 3.4178 -3.6665 -2.7229 18 7 3.0461 -3.0646 -1.4352 19 6 3.3491 -3.6814 -0.2759 20 8 3.1184 -3.1331 0.7810 21 6 3.9745 -5.0524 -0.2928 22 6 4.2156 -5.5207 1.1436 23 1 3.2856 -5.4923 1.7113 24 6 4.8087 -6.9522 1.1502 25 6 5.5451 -6.9598 2.5175 26 6 6.7310 -7.9262 2.4918 27 6 4.5850 -7.3101 3.6561 28 6 6.0294 -5.4989 2.6371 29 8 5.2106 -4.6995 1.7754 30 1 -0.3633 -1.0234 -0.0944 31 1 -0.3634 0.4299 0.9334 32 1 -0.3634 0.5933 -0.8391 33 1 -0.2311 3.1893 0.8462 34 1 1.6528 -2.0025 0.5946 35 1 3.1877 -1.1163 0.4301 36 1 2.5812 0.1588 -2.3524 37 1 4.0959 -0.5764 -1.7731 38 1 3.9461 -0.6262 -4.2576 39 1 2.4409 -1.5682 -4.1387 40 1 5.1543 -2.4266 -3.0340 41 1 4.4100 -3.0385 -4.5314 42 1 2.5171 -3.9482 -3.2683 43 1 4.0325 -4.5502 -2.5516 44 1 3.3055 -5.7507 -0.7956 45 1 4.9246 -5.0117 -0.8257 46 1 4.0202 -7.7042 1.1245 47 1 5.5086 -7.0912 0.3262 48 1 7.2906 -7.8395 3.4232 49 1 6.3656 -8.9471 2.3811 50 1 7.3819 -7.6804 1.6528 51 1 3.7316 -6.6325 3.6331 52 1 4.2375 -8.3362 3.5357 53 1 5.1019 -7.2112 4.6107 54 1 7.0718 -5.4282 2.3266 55 1 5.9252 -5.1579 3.6671 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158212269.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:14 Heat of formation + Delta-G solvation = -70.959859 kcal Electronic energy + Delta-G solvation = -31812.012895 eV Core-core repulsion = 27849.118159 eV Total energy + Delta-G solvation = -3962.894736 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 6.21 seconds Orbital eigenvalues (eV) -41.63239 -40.67397 -38.36963 -37.32754 -35.46847 -34.24609 -33.69632 -32.89584 -31.62099 -28.67218 -28.24557 -28.03627 -27.55660 -26.84267 -25.48943 -24.09629 -22.76009 -21.94945 -21.52188 -20.48954 -19.66010 -18.76870 -17.79045 -17.51187 -17.08291 -16.63176 -16.41999 -16.25994 -15.60625 -15.48621 -15.36728 -15.16485 -14.96600 -14.66928 -14.56768 -14.32999 -14.28494 -14.11239 -13.90681 -13.78966 -13.52489 -13.31276 -12.86324 -12.83387 -12.78883 -12.69366 -12.56860 -12.48114 -12.29144 -12.18753 -12.11607 -11.99716 -11.84064 -11.73358 -11.64639 -11.61593 -11.50783 -11.35103 -11.33130 -10.69609 -10.39555 -10.11019 -9.39869 -8.83384 -7.70569 -5.20184 1.42721 1.44551 1.53480 1.81562 2.09204 2.52905 2.93645 3.31863 3.41082 3.59722 3.80956 3.82665 3.86531 3.92332 3.99731 4.06974 4.09667 4.19766 4.22246 4.35943 4.39895 4.40749 4.53616 4.61849 4.67526 4.67945 4.72435 4.76683 4.77773 4.79381 4.83629 4.88850 4.92069 5.01987 5.04784 5.05451 5.08172 5.15469 5.17071 5.20523 5.20763 5.27029 5.33234 5.36603 5.44180 5.45917 5.53076 5.61613 5.80675 5.82215 6.22887 6.33404 6.64398 7.18084 7.40930 7.92736 8.32688 9.25199 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013414 B = 0.003087 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.918293 B = 9068.852052 C =10139.233836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.624 5.624 3 C -0.240 4.240 4 H 0.066 0.934 5 C -0.066 4.066 6 N -0.945 5.945 7 Si 0.969 3.031 8 H -0.283 1.283 9 H -0.294 1.294 10 H -0.274 1.274 11 C 0.182 3.818 12 C 0.138 3.862 13 H 0.057 0.943 14 C -0.112 4.112 15 C -0.116 4.116 16 C -0.128 4.128 17 C 0.102 3.898 18 N -0.610 5.610 19 C 0.495 3.505 20 O -0.567 6.567 21 C -0.128 4.128 22 C 0.091 3.909 23 H 0.049 0.951 24 C -0.130 4.130 25 C -0.096 4.096 26 C -0.130 4.130 27 C -0.140 4.140 28 C 0.048 3.952 29 O -0.401 6.401 30 H 0.018 0.982 31 H 0.033 0.967 32 H 0.001 0.999 33 H 0.244 0.756 34 H 0.043 0.957 35 H 0.026 0.974 36 H 0.054 0.946 37 H 0.035 0.965 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.055 0.945 41 H 0.107 0.893 42 H 0.083 0.917 43 H 0.116 0.884 44 H 0.140 0.860 45 H 0.119 0.881 46 H 0.103 0.897 47 H 0.100 0.900 48 H 0.059 0.941 49 H 0.074 0.926 50 H 0.064 0.936 51 H 0.038 0.962 52 H 0.077 0.923 53 H 0.060 0.940 54 H 0.075 0.925 55 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.212 -27.006 -7.313 30.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.348 5.348 3 C -0.370 4.370 4 H 0.084 0.916 5 C -0.259 4.259 6 N -0.594 5.594 7 Si 0.797 3.203 8 H -0.209 1.209 9 H -0.221 1.221 10 H -0.199 1.199 11 C 0.056 3.944 12 C 0.032 3.968 13 H 0.075 0.925 14 C -0.151 4.151 15 C -0.153 4.153 16 C -0.166 4.166 17 C -0.019 4.019 18 N -0.345 5.345 19 C 0.285 3.715 20 O -0.446 6.446 21 C -0.167 4.167 22 C 0.033 3.967 23 H 0.067 0.933 24 C -0.167 4.167 25 C -0.097 4.097 26 C -0.187 4.187 27 C -0.197 4.197 28 C -0.029 4.029 29 O -0.321 6.321 30 H 0.037 0.963 31 H 0.051 0.949 32 H 0.019 0.981 33 H 0.054 0.946 34 H 0.061 0.939 35 H 0.045 0.955 36 H 0.073 0.927 37 H 0.054 0.946 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.074 0.926 41 H 0.125 0.875 42 H 0.101 0.899 43 H 0.134 0.866 44 H 0.158 0.842 45 H 0.137 0.863 46 H 0.121 0.879 47 H 0.119 0.881 48 H 0.078 0.922 49 H 0.093 0.907 50 H 0.083 0.917 51 H 0.058 0.942 52 H 0.096 0.904 53 H 0.079 0.921 54 H 0.093 0.907 55 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 12.029 -26.395 -6.738 29.779 hybrid contribution -0.100 1.708 0.465 1.773 sum 11.929 -24.687 -6.273 28.127 Atomic orbital electron populations 1.20721 0.82636 0.93969 0.99536 1.44547 1.02362 1.01998 1.85939 1.19490 0.92486 0.85080 1.39940 0.91569 1.25645 0.97568 1.01011 1.01655 1.70315 1.12869 1.25268 1.50994 0.85219 0.77888 0.79785 0.77376 1.20932 1.22111 1.19906 1.21184 0.94853 0.85420 0.92920 1.21805 0.93919 0.82821 0.98290 0.92537 1.21714 0.98670 0.98291 0.96385 1.21533 1.00858 0.97979 0.94951 1.21905 0.98104 0.94936 1.01618 1.22071 1.00566 0.96751 0.82550 1.48441 1.57541 1.21287 1.07200 1.21434 0.78102 0.88904 0.83034 1.90813 1.54019 1.66948 1.32801 1.21990 1.03791 0.92906 0.98022 1.22760 0.91650 0.90193 0.92054 0.93264 1.23411 1.00958 0.94968 0.97365 1.22111 0.97223 0.94384 0.95949 1.21721 0.95824 0.98674 1.02501 1.21839 0.98339 1.02071 0.97420 1.23424 0.94969 0.90549 0.93954 1.88564 1.46550 1.35258 1.61711 0.96347 0.94888 0.98075 0.94591 0.93929 0.95532 0.92730 0.94620 0.91441 0.91382 0.92592 0.87467 0.89862 0.86567 0.84220 0.86341 0.87894 0.88147 0.92158 0.90744 0.91712 0.94233 0.90407 0.92078 0.90713 0.92989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.82 9.04 127.77 1.15 10.98 16 2 N -0.62 -35.30 2.67 -726.91 -1.94 -37.24 16 3 C -0.24 -14.40 8.25 84.04 0.69 -13.71 16 4 H 0.07 3.95 7.80 -2.91 -0.02 3.92 16 5 C -0.07 -3.98 5.31 84.86 0.45 -3.53 16 6 N -0.94 -59.74 9.97 21.65 0.22 -59.53 16 7 Si 0.97 48.48 29.57 68.60 2.03 50.51 16 8 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 9 H -0.29 -14.73 7.11 99.48 0.71 -14.02 16 10 H -0.27 -13.23 7.11 99.48 0.71 -12.52 16 11 C 0.18 9.07 3.51 86.38 0.30 9.37 16 12 C 0.14 5.33 3.18 44.97 0.14 5.47 16 13 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 14 C -0.11 -4.18 4.68 30.67 0.14 -4.04 16 15 C -0.12 -2.95 5.88 30.62 0.18 -2.77 16 16 C -0.13 -2.34 6.08 30.67 0.19 -2.16 16 17 C 0.10 1.80 6.32 86.36 0.55 2.35 16 18 N -0.61 -18.06 2.97 -795.04 -2.36 -20.43 16 19 C 0.50 15.86 7.51 87.66 0.66 16.52 16 20 O -0.57 -24.91 10.94 8.31 0.09 -24.82 16 21 C -0.13 -2.48 3.85 29.85 0.11 -2.37 16 22 C 0.09 2.07 2.63 31.26 0.08 2.15 16 23 H 0.05 1.37 7.63 -2.39 -0.02 1.35 16 24 C -0.13 -1.69 5.53 32.05 0.18 -1.52 16 25 C -0.10 -1.41 0.94 -50.92 -0.05 -1.46 16 26 C -0.13 -1.25 8.50 71.98 0.61 -0.64 16 27 C -0.14 -2.08 8.46 71.98 0.61 -1.47 16 28 C 0.05 1.04 7.00 72.45 0.51 1.55 16 29 O -0.40 -12.10 10.41 -137.65 -1.43 -13.53 16 30 H 0.02 0.89 7.91 -2.38 -0.02 0.87 16 31 H 0.03 2.03 6.44 -2.39 -0.02 2.02 16 32 H 0.00 0.04 7.81 -2.38 -0.02 0.02 16 33 H 0.24 14.95 8.31 -92.71 -0.77 14.17 16 34 H 0.04 2.25 6.28 -2.38 -0.01 2.23 16 35 H 0.03 1.47 6.98 -2.39 -0.02 1.45 16 36 H 0.05 2.43 7.00 -2.38 -0.02 2.41 16 37 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 40 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 41 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.12 1.21 5.97 -2.39 -0.01 1.20 16 44 H 0.14 1.60 8.11 -2.39 -0.02 1.58 16 45 H 0.12 1.79 7.49 -2.39 -0.02 1.77 16 46 H 0.10 0.97 8.04 -2.39 -0.02 0.95 16 47 H 0.10 0.94 7.94 -2.39 -0.02 0.92 16 48 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 49 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 50 H 0.06 0.57 8.12 -2.39 -0.02 0.55 16 51 H 0.04 0.76 7.53 -2.39 -0.02 0.74 16 52 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 53 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 54 H 0.07 1.44 7.81 -2.39 -0.02 1.42 16 55 H 0.05 1.23 7.84 -2.39 -0.02 1.21 16 Total: -1.00 -81.84 409.08 3.94 -77.90 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: 0.83 Total: 12.43 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: 6.51 Total: 14.72 kcal Atomic # 7 Polarization: -113.11 SS G_CDS: -4.09 Total: -117.20 kcal Atomic # 8 Polarization: -37.01 SS G_CDS: -1.34 Total: -38.36 kcal Atomic # 14 Polarization: 48.48 SS G_CDS: 2.03 Total: 50.51 kcal Total: -81.84 3.94 -77.90 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158212269.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.940 kcal (2) G-P(sol) polarization free energy of solvation -81.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.21 seconds