Wall clock time and date at job start Tue Mar 31 2020 21:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42895 * 114.00328 * 2 1 4 4 C 1.53005 * 109.47022 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.45867 * 299.99725 * 4 3 2 6 6 N 1.46492 * 109.47019 * 60.03110 * 5 4 3 7 7 C 1.34777 * 120.00155 * 179.97438 * 6 5 4 8 8 O 1.21278 * 119.99897 * 359.97438 * 7 6 5 9 9 C 1.50701 * 120.00355 * 179.97438 * 7 6 5 10 10 C 1.53005 * 110.01317 * 59.30005 * 9 7 6 11 11 C 1.54262 * 110.03354 * 297.90850 * 9 7 6 12 12 C 1.54961 * 104.16025 * 217.13146 * 11 9 7 13 13 C 1.54889 * 102.77765 * 37.89171 * 12 11 9 14 14 C 1.53873 * 110.03212 * 180.69004 * 9 7 6 15 15 C 1.53037 * 109.44925 * 59.96979 * 4 3 2 16 16 C 1.53194 * 109.30958 * 181.37997 * 15 4 3 17 17 N 1.46926 * 108.77623 * 305.35843 * 16 15 4 18 18 C 1.36933 * 120.62967 * 233.58885 * 17 16 15 19 19 H 1.08005 * 120.00242 * 27.69891 * 18 17 16 20 20 C 1.38813 * 119.99983 * 207.69230 * 18 17 16 21 21 N 1.31626 * 119.99594 * 17.35969 * 20 18 17 22 22 Si 1.86796 * 120.00386 * 197.35929 * 20 18 17 23 23 H 1.48499 * 109.47057 * 59.99872 * 22 20 18 24 24 H 1.48496 * 109.47198 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46837 * 300.00140 * 22 20 18 26 26 C 1.46927 * 118.73469 * 53.61055 * 17 16 15 27 27 C 1.53043 * 109.45668 * 180.02562 * 4 3 2 28 28 H 1.09006 * 109.46793 * 59.99869 * 1 2 3 29 29 H 1.09002 * 109.47579 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47217 * 300.00588 * 1 2 3 31 31 H 1.08999 * 109.47297 * 59.99936 * 3 2 1 32 32 H 1.09001 * 109.47186 * 299.99475 * 3 2 1 33 33 H 1.09000 * 109.47218 * 300.02856 * 5 4 3 34 34 H 1.09003 * 109.46937 * 180.02562 * 5 4 3 35 35 H 0.97001 * 120.00227 * 359.97438 * 6 5 4 36 36 H 1.08995 * 109.47288 * 60.70240 * 10 9 7 37 37 H 1.08997 * 109.46870 * 180.70253 * 10 9 7 38 38 H 1.09003 * 109.47161 * 300.69807 * 10 9 7 39 39 H 1.08999 * 110.48419 * 335.78618 * 11 9 7 40 40 H 1.09000 * 110.48400 * 98.42464 * 11 9 7 41 41 H 1.08997 * 110.72650 * 279.57432 * 12 11 9 42 42 H 1.08998 * 110.76237 * 156.22043 * 12 11 9 43 43 H 1.08997 * 110.48911 * 203.40459 * 13 12 11 44 44 H 1.09000 * 110.59988 * 80.81003 * 13 12 11 45 45 H 1.09003 * 110.03051 * 238.56971 * 14 9 7 46 46 H 1.08995 * 110.03369 * 359.94895 * 14 9 7 47 47 H 1.09007 * 109.49551 * 301.32605 * 15 4 3 48 48 H 1.08994 * 109.50192 * 61.42096 * 15 4 3 49 49 H 1.09007 * 109.58489 * 185.57199 * 16 15 4 50 50 H 1.08998 * 109.58984 * 65.14786 * 16 15 4 51 51 H 0.96995 * 119.99712 * 179.97438 * 21 20 18 52 52 H 1.09000 * 109.58170 * 186.60749 * 26 17 16 53 53 H 1.09001 * 109.70520 * 66.25292 * 26 17 16 54 54 H 1.09003 * 109.50008 * 298.57617 * 27 4 3 55 55 H 1.08998 * 109.49915 * 58.64165 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1844 -0.0006 5 6 3.9871 0.4249 1.2484 6 7 3.3916 -0.9135 1.2480 7 6 3.6512 -1.7669 2.2583 8 8 4.3782 -1.4270 3.1675 9 6 3.0382 -3.1436 2.2582 10 6 3.4671 -3.9077 1.0039 11 6 1.5002 -3.0372 2.3121 12 6 1.0698 -4.2197 3.2164 13 6 2.1810 -4.2481 4.2951 14 6 3.4711 -3.9134 3.5182 15 6 3.9859 0.4245 -1.2503 16 6 5.5104 0.2752 -1.2304 17 7 6.1141 1.6066 -1.0837 18 6 7.0598 2.0456 -1.9715 19 1 7.0628 1.6732 -2.9853 20 6 8.0143 2.9693 -1.5685 21 7 8.2372 3.1686 -0.2867 22 14 8.9825 3.9294 -2.8452 23 1 8.0470 4.7224 -3.6826 24 1 9.9323 4.8437 -2.1617 25 1 9.7384 2.9848 -3.7065 26 6 5.6842 2.4578 0.0341 27 6 4.1578 2.5827 0.0000 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.6887 1.8463 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.6654 0.9655 2.1385 34 1 5.0738 0.3391 1.2483 35 1 2.8104 -1.1855 0.5206 36 1 4.5522 -4.0098 0.9939 37 1 3.0091 -4.8968 1.0067 38 1 3.1454 -3.3609 0.1175 39 1 1.1988 -2.0883 2.7559 40 1 1.0751 -3.1447 1.3142 41 1 1.0558 -5.1519 2.6517 42 1 0.0972 -4.0262 3.6688 43 1 2.2520 -5.2389 4.7437 44 1 1.9911 -3.4962 5.0611 45 1 3.9859 -4.8319 3.2361 46 1 4.1253 -3.2917 4.1293 47 1 3.5238 -0.5627 -1.2620 48 1 3.6860 0.9776 -2.1403 49 1 5.8455 -0.1771 -2.1639 50 1 5.8051 -0.3542 -0.3907 51 1 8.9045 3.8138 -0.0051 52 1 6.1339 3.4458 -0.0651 53 1 5.9932 2.0088 0.9780 54 1 3.8563 3.1155 -0.9019 55 1 3.8175 3.1319 0.8779 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162383663.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:50 Heat of formation + Delta-G solvation = -96.334737 kcal Electronic energy + Delta-G solvation = -32597.618330 eV Core-core repulsion = 28633.623257 eV Total energy + Delta-G solvation = -3963.995073 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.64789 -40.44859 -38.28279 -38.17260 -36.09048 -34.57046 -32.94713 -32.10075 -31.46772 -29.58504 -28.95895 -27.64097 -26.91857 -26.19342 -25.50095 -23.91092 -22.71829 -22.53237 -21.49586 -20.38870 -19.58158 -18.56972 -17.80470 -17.18707 -17.06887 -16.86593 -16.70532 -16.33300 -16.16575 -15.74514 -15.52583 -15.38025 -15.18339 -14.82707 -14.68920 -14.46063 -14.21376 -14.07971 -13.71951 -13.49145 -13.38513 -13.21218 -13.01949 -12.92669 -12.67125 -12.56667 -12.52273 -12.42355 -12.12983 -12.03190 -11.96236 -11.90388 -11.84331 -11.71843 -11.55303 -11.48119 -11.36227 -11.22824 -11.11040 -10.58960 -10.50980 -10.46886 -9.87519 -8.66559 -7.86589 -5.31930 1.46551 1.48537 1.55832 1.76027 2.28290 2.51613 2.86518 3.27925 3.53731 3.65123 3.68221 3.73440 3.80613 3.95593 3.97259 4.24587 4.29147 4.38752 4.45101 4.46135 4.51362 4.53613 4.57074 4.59272 4.62308 4.68394 4.71541 4.72773 4.77921 4.80788 4.90695 4.93056 4.96060 4.98610 5.02006 5.06889 5.12807 5.15766 5.17851 5.23658 5.26652 5.27247 5.36954 5.37617 5.44746 5.49407 5.51052 5.64079 5.64687 5.79169 6.26403 6.39024 6.81857 7.15087 7.45675 7.86807 8.38970 9.19507 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016359 B = 0.003281 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.216298 B = 8532.596166 C = 9391.004964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.403 6.403 3 C 0.083 3.917 4 C -0.050 4.050 5 C 0.141 3.859 6 N -0.692 5.692 7 C 0.506 3.494 8 O -0.601 6.601 9 C -0.079 4.079 10 C -0.134 4.134 11 C -0.104 4.104 12 C -0.114 4.114 13 C -0.122 4.122 14 C -0.121 4.121 15 C -0.101 4.101 16 C 0.142 3.858 17 N -0.607 5.607 18 C -0.263 4.263 19 H 0.068 0.932 20 C -0.052 4.052 21 N -0.937 5.937 22 Si 0.968 3.032 23 H -0.275 1.275 24 H -0.296 1.296 25 H -0.277 1.277 26 C 0.179 3.821 27 C -0.116 4.116 28 H 0.049 0.951 29 H 0.103 0.897 30 H 0.042 0.958 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.046 0.954 34 H 0.037 0.963 35 H 0.418 0.582 36 H 0.043 0.957 37 H 0.094 0.906 38 H 0.067 0.933 39 H 0.055 0.945 40 H 0.095 0.905 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.051 0.949 45 H 0.078 0.922 46 H 0.051 0.949 47 H 0.079 0.921 48 H 0.065 0.935 49 H 0.050 0.950 50 H 0.001 0.999 51 H 0.249 0.751 52 H 0.055 0.945 53 H -0.010 1.010 54 H 0.069 0.931 55 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.462 -13.272 1.823 26.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.322 6.322 3 C 0.006 3.994 4 C -0.050 4.050 5 C 0.016 3.984 6 N -0.349 5.349 7 C 0.294 3.706 8 O -0.483 6.483 9 C -0.082 4.082 10 C -0.192 4.192 11 C -0.141 4.141 12 C -0.151 4.151 13 C -0.159 4.159 14 C -0.159 4.159 15 C -0.140 4.140 16 C 0.016 3.984 17 N -0.330 5.330 18 C -0.393 4.393 19 H 0.086 0.914 20 C -0.247 4.247 21 N -0.583 5.583 22 Si 0.796 3.204 23 H -0.201 1.201 24 H -0.223 1.223 25 H -0.203 1.203 26 C 0.053 3.947 27 C -0.156 4.156 28 H 0.068 0.932 29 H 0.122 0.878 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.262 0.738 36 H 0.062 0.938 37 H 0.112 0.888 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.114 0.886 41 H 0.105 0.895 42 H 0.098 0.902 43 H 0.099 0.901 44 H 0.070 0.930 45 H 0.096 0.904 46 H 0.070 0.930 47 H 0.098 0.902 48 H 0.084 0.916 49 H 0.069 0.931 50 H 0.019 0.981 51 H 0.058 0.942 52 H 0.073 0.927 53 H 0.008 0.992 54 H 0.088 0.912 55 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -21.744 -13.090 2.469 25.500 hybrid contribution 1.188 1.187 -0.364 1.718 sum -20.556 -11.903 2.106 23.846 Atomic orbital electron populations 1.22917 0.79284 1.04025 1.00509 1.87484 1.21381 1.27856 1.95493 1.22509 0.90895 0.84870 1.01112 1.20658 0.94184 0.95724 0.94474 1.21140 0.96783 0.83427 0.97028 1.46126 1.49671 1.13583 1.25472 1.21323 0.80084 0.88121 0.81068 1.90632 1.40292 1.79000 1.38398 1.21443 0.97889 0.90212 0.98637 1.21901 1.01102 1.01334 0.94813 1.22426 0.90395 0.99280 1.02022 1.22502 0.98147 0.98337 0.96123 1.22347 0.94099 1.01659 0.97833 1.22255 0.98974 0.99505 0.95118 1.21804 0.95454 1.00232 0.96496 1.21041 0.93093 0.86529 0.97688 1.44287 1.44928 1.12847 1.30962 1.19507 1.05788 1.22306 0.91734 0.91444 1.25819 0.98322 1.03171 0.97410 1.70211 1.35618 1.37208 1.15231 0.85328 0.78050 0.78469 0.78510 1.20062 1.22272 1.20271 1.20551 0.90838 0.95271 0.88050 1.21973 0.96796 0.94825 1.01961 0.93216 0.87836 0.93971 0.92713 0.91579 0.93527 0.94511 0.73768 0.93798 0.88762 0.91368 0.92619 0.88636 0.89473 0.90161 0.90071 0.92966 0.90352 0.93004 0.90219 0.91594 0.93101 0.98141 0.94209 0.92696 0.99180 0.91197 0.91094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.61 16 2 O -0.40 -7.87 6.73 -148.98 -1.00 -8.87 16 3 C 0.08 1.88 4.80 71.98 0.35 2.22 16 4 C -0.05 -1.53 0.51 -52.15 -0.03 -1.56 16 5 C 0.14 5.00 3.80 86.38 0.33 5.33 16 6 N -0.69 -20.67 4.46 -463.08 -2.07 -22.73 16 7 C 0.51 16.47 6.36 87.66 0.56 17.03 16 8 O -0.60 -25.77 15.21 -3.02 -0.05 -25.81 16 9 C -0.08 -1.77 0.78 -52.20 -0.04 -1.82 16 10 C -0.13 -2.50 8.04 71.98 0.58 -1.92 16 11 C -0.10 -1.68 5.84 31.69 0.19 -1.50 16 12 C -0.11 -1.45 6.91 31.91 0.22 -1.23 16 13 C -0.12 -2.10 6.83 31.67 0.22 -1.88 16 14 C -0.12 -2.79 6.06 31.32 0.19 -2.60 16 15 C -0.10 -3.25 4.59 30.67 0.14 -3.10 16 16 C 0.14 6.04 6.05 86.36 0.52 6.56 16 17 N -0.61 -30.97 2.99 -699.08 -2.09 -33.07 16 18 C -0.26 -14.70 9.59 84.03 0.81 -13.90 16 19 H 0.07 3.65 7.89 -2.91 -0.02 3.62 16 20 C -0.05 -2.96 4.91 84.86 0.42 -2.54 16 21 N -0.94 -57.10 11.19 21.65 0.24 -56.85 16 22 Si 0.97 45.54 29.59 68.60 2.03 47.57 16 23 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 24 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 25 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 26 C 0.18 8.77 4.84 86.36 0.42 9.19 16 27 C -0.12 -4.19 4.91 30.67 0.15 -4.04 16 28 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 29 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.04 1.66 4.98 -2.39 -0.01 1.65 16 35 H 0.42 10.40 4.09 -92.71 -0.38 10.02 16 36 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.07 1.17 7.55 -2.39 -0.02 1.15 16 39 H 0.05 1.07 7.85 -2.39 -0.02 1.05 16 40 H 0.10 1.14 7.84 -2.39 -0.02 1.12 16 41 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.08 1.58 7.67 -2.39 -0.02 1.56 16 46 H 0.05 1.60 6.39 -2.39 -0.02 1.59 16 47 H 0.08 2.19 6.50 -2.38 -0.02 2.17 16 48 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 49 H 0.05 2.13 7.93 -2.38 -0.02 2.11 16 50 H 0.00 0.03 6.69 -2.39 -0.02 0.02 16 51 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 52 H 0.05 3.05 6.04 -2.39 -0.01 3.04 16 53 H -0.01 -0.54 6.70 -2.39 -0.02 -0.55 16 54 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 55 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -73.40 405.86 3.79 -69.61 By element: Atomic # 1 Polarization: 23.83 SS G_CDS: 0.47 Total: 24.31 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: 6.26 Total: 5.85 kcal Atomic # 7 Polarization: -108.74 SS G_CDS: -3.92 Total: -112.65 kcal Atomic # 8 Polarization: -33.64 SS G_CDS: -1.05 Total: -34.68 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -73.40 3.79 -69.61 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162383663.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.727 kcal (2) G-P(sol) polarization free energy of solvation -73.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds