Wall clock time and date at job start Tue Mar 31 2020 21:37:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42902 * 1
3 3 C 1.42891 * 114.00302 * 2 1
4 4 C 1.53001 * 109.47180 * 180.02562 * 3 2 1
5 5 C 1.53002 * 109.45848 * 299.99901 * 4 3 2
6 6 N 1.46506 * 109.46753 * 60.00334 * 5 4 3
7 7 C 1.34775 * 119.99798 * 179.97438 * 6 5 4
8 8 O 1.21282 * 120.00069 * 359.97438 * 7 6 5
9 9 C 1.50696 * 119.99984 * 179.97438 * 7 6 5
10 10 H 1.09002 * 112.85071 * 36.07787 * 9 7 6
11 11 C 1.53785 * 113.61479 * 167.26663 * 9 7 6
12 12 C 1.54057 * 86.98174 * 89.16500 * 11 9 7
13 13 C 1.53772 * 87.07953 * 25.43095 * 12 11 9
14 14 C 1.52995 * 113.61843 * 220.02184 * 13 12 11
15 15 C 1.53008 * 113.61500 * 89.11562 * 13 12 11
16 16 C 1.53038 * 109.45975 * 59.97620 * 4 3 2
17 17 C 1.53163 * 109.32596 * 181.38757 * 16 4 3
18 18 N 1.46921 * 108.76899 * 305.35387 * 17 16 4
19 19 C 1.36945 * 120.62886 * 233.63411 * 18 17 16
20 20 H 1.07997 * 119.99768 * 152.35301 * 19 18 17
21 21 C 1.38803 * 120.00007 * 332.34929 * 19 18 17
22 22 N 1.31621 * 120.00082 * 343.29387 * 21 19 18
23 23 Si 1.86805 * 120.00015 * 163.29572 * 21 19 18
24 24 H 1.48504 * 109.46937 * 359.97438 * 23 21 19
25 25 H 1.48492 * 109.47414 * 119.99998 * 23 21 19
26 26 H 1.48498 * 109.47028 * 240.00161 * 23 21 19
27 27 C 1.46928 * 118.74065 * 53.60820 * 18 17 16
28 28 C 1.53042 * 109.46073 * 180.02562 * 4 3 2
29 29 H 1.08994 * 109.47374 * 179.97438 * 1 2 3
30 30 H 1.09000 * 109.47105 * 300.00255 * 1 2 3
31 31 H 1.09000 * 109.46831 * 59.99665 * 1 2 3
32 32 H 1.09003 * 109.47040 * 60.00582 * 3 2 1
33 33 H 1.09003 * 109.47401 * 300.00065 * 3 2 1
34 34 H 1.09007 * 109.46859 * 179.97438 * 5 4 3
35 35 H 1.08997 * 109.47265 * 300.00265 * 5 4 3
36 36 H 0.96997 * 120.00075 * 359.97438 * 6 5 4
37 37 H 1.08992 * 113.61652 * 203.66427 * 11 9 7
38 38 H 1.08998 * 113.61490 * 334.57244 * 11 9 7
39 39 H 1.08998 * 113.61093 * 270.88151 * 12 11 9
40 40 H 1.08997 * 113.69326 * 139.99344 * 12 11 9
41 41 H 1.08999 * 109.47659 * 155.18729 * 14 13 12
42 42 H 1.09000 * 109.47143 * 275.19260 * 14 13 12
43 43 H 1.09007 * 109.47084 * 35.18740 * 14 13 12
44 44 H 1.08992 * 109.46951 * 322.50679 * 15 13 12
45 45 H 1.09000 * 109.46769 * 82.50529 * 15 13 12
46 46 H 1.08997 * 109.47546 * 202.50176 * 15 13 12
47 47 H 1.08999 * 109.49604 * 301.32031 * 16 4 3
48 48 H 1.08995 * 109.49763 * 61.42189 * 16 4 3
49 49 H 1.09002 * 109.59188 * 185.56469 * 17 16 4
50 50 H 1.09003 * 109.71353 * 65.20984 * 17 16 4
51 51 H 0.97000 * 119.99700 * 179.97438 * 22 21 19
52 52 H 1.08996 * 109.58362 * 186.60416 * 27 18 17
53 53 H 1.09002 * 109.69842 * 66.25367 * 27 18 17
54 54 H 1.09001 * 109.49921 * 298.57807 * 28 4 3
55 55 H 1.08995 * 109.49903 * 58.67337 * 28 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0103 1.3053 0.0000
4 6 3.5355 1.1845 -0.0006
5 6 3.9871 0.4249 1.2484
6 7 3.3911 -0.9134 1.2482
7 6 3.6506 -1.7668 2.2585
8 8 4.3779 -1.4270 3.1676
9 6 3.0370 -3.1432 2.2587
10 1 2.9610 -3.5728 1.2598
11 6 3.6604 -4.0954 3.2929
12 6 2.6104 -3.5692 4.2898
13 6 1.7343 -3.2369 3.0705
14 6 0.9920 -1.9048 3.1939
15 6 0.8240 -4.3881 2.6378
16 6 3.9862 0.4247 -1.2503
17 6 5.5104 0.2752 -1.2305
18 7 6.1141 1.6066 -1.0836
19 6 7.0591 2.0460 -1.9720
20 1 7.1761 3.1036 -2.1568
21 6 7.8665 1.1321 -2.6350
22 7 7.9657 -0.1026 -2.1900
23 14 8.8125 1.6546 -4.1587
24 1 8.5316 3.0834 -4.4500
25 1 10.2676 1.4735 -3.9243
26 1 8.3898 0.8221 -5.3134
27 6 5.6842 2.4579 0.0341
28 6 4.1578 2.5827 0.0000
29 1 -0.3634 -1.0276 -0.0005
30 1 -0.3633 0.5139 0.8900
31 1 -0.3633 0.5139 -0.8900
32 1 1.6887 1.8462 0.8901
33 1 1.6887 1.8463 -0.8900
34 1 5.0738 0.3383 1.2479
35 1 3.6658 0.9657 2.1385
36 1 2.8096 -1.1852 0.5210
37 1 3.5376 -5.1498 3.0454
38 1 4.6855 -3.8390 3.5603
39 1 2.9376 -2.6901 4.8450
40 1 2.1897 -4.3429 4.9319
41 1 0.7667 -1.5207 2.1990
42 1 0.0632 -2.0560 3.7440
43 1 1.6173 -1.1884 3.7269
44 1 1.3518 -5.3339 2.7594
45 1 -0.0750 -4.3917 3.2541
46 1 0.5467 -4.2586 1.5916
47 1 3.5243 -0.5626 -1.2621
48 1 3.6864 0.9779 -2.1403
49 1 5.8455 -0.1771 -2.1639
50 1 5.8072 -0.3550 -0.3921
51 1 8.5297 -0.7413 -2.6535
52 1 6.1340 3.4457 -0.0651
53 1 5.9933 2.0087 0.9780
54 1 3.8564 3.1155 -0.9019
55 1 3.8180 3.1317 0.8781
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001162424457.mol2 55
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:37:14
Heat of formation + Delta-G solvation = -66.794820 kcal
Electronic energy + Delta-G solvation = -32724.716557 eV
Core-core repulsion = 28762.002431 eV
Total energy + Delta-G solvation = -3962.714126 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 338.236 amu
Computer time = 1.22 seconds
Orbital eigenvalues (eV)
-41.90273 -40.71290 -38.60615 -38.26345 -36.03739 -34.54708 -32.70350 -31.62334
-31.57439 -29.06204 -28.69126 -28.10820 -27.10168 -26.03686 -25.47551 -23.91835
-23.45436 -22.51154 -21.66062 -20.18774 -19.29471 -18.30745 -17.75130 -17.09164
-16.98990 -16.83919 -16.65074 -16.35674 -16.13918 -15.58671 -15.38719 -15.30174
-15.24502 -15.06623 -14.60604 -14.49543 -14.14097 -14.08862 -13.84829 -13.62521
-13.30842 -13.10246 -13.07372 -12.98483 -12.83865 -12.65382 -12.55711 -12.37055
-12.28227 -12.25349 -12.05650 -11.94578 -11.84519 -11.80183 -11.43152 -11.20906
-11.11031 -11.05039 -10.97413 -10.62989 -10.54207 -10.45806 -9.83603 -8.66131
-7.86143 -5.31995 1.45259 1.46639 1.57561 1.73357 2.30071 2.51255
2.88342 3.28432 3.49454 3.62301 3.67257 3.74736 3.76767 3.87424
3.98440 4.00095 4.26878 4.30903 4.33690 4.47701 4.51741 4.56034
4.60143 4.63802 4.67838 4.68551 4.71376 4.73994 4.79880 4.84821
4.88633 4.91097 4.91687 4.96463 5.03568 5.03872 5.07858 5.16677
5.18115 5.23971 5.25172 5.28608 5.32847 5.36953 5.46795 5.49568
5.63391 5.64739 5.71213 5.80161 6.29125 6.39518 6.83588 7.15608
7.46789 7.87537 8.39001 9.19860
Molecular weight = 338.24amu
Principal moments of inertia in cm(-1)
A = 0.014363 B = 0.003509 C = 0.003150
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1949.011796 B = 7977.680233 C = 8887.901431
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.029 3.971
2 O -0.405 6.405
3 C 0.083 3.917
4 C -0.051 4.051
5 C 0.142 3.858
6 N -0.695 5.695
7 C 0.523 3.477
8 O -0.597 6.597
9 C -0.138 4.138
10 H 0.106 0.894
11 C -0.122 4.122
12 C -0.129 4.129
13 C -0.054 4.054
14 C -0.138 4.138
15 C -0.122 4.122
16 C -0.108 4.108
17 C 0.183 3.817
18 N -0.608 5.608
19 C -0.260 4.260
20 H 0.069 0.931
21 C -0.053 4.053
22 N -0.937 5.937
23 Si 0.967 3.033
24 H -0.264 1.264
25 H -0.295 1.295
26 H -0.290 1.290
27 C 0.138 3.862
28 C -0.108 4.108
29 H 0.098 0.902
30 H 0.047 0.953
31 H 0.048 0.952
32 H 0.062 0.938
33 H 0.063 0.937
34 H 0.035 0.965
35 H 0.056 0.944
36 H 0.416 0.584
37 H 0.112 0.888
38 H 0.047 0.953
39 H 0.058 0.942
40 H 0.087 0.913
41 H 0.068 0.932
42 H 0.074 0.926
43 H 0.027 0.973
44 H 0.066 0.934
45 H 0.075 0.925
46 H 0.069 0.931
47 H 0.065 0.935
48 H 0.057 0.943
49 H 0.049 0.951
50 H -0.013 1.013
51 H 0.248 0.752
52 H 0.056 0.944
53 H 0.006 0.994
54 H 0.074 0.926
55 H 0.086 0.914
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.445 -4.808 7.376 24.110
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 O -0.325 6.325
3 C 0.006 3.994
4 C -0.052 4.052
5 C 0.018 3.982
6 N -0.351 5.351
7 C 0.311 3.689
8 O -0.479 6.479
9 C -0.159 4.159
10 H 0.124 0.876
11 C -0.160 4.160
12 C -0.166 4.166
13 C -0.055 4.055
14 C -0.195 4.195
15 C -0.179 4.179
16 C -0.147 4.147
17 C 0.057 3.943
18 N -0.332 5.332
19 C -0.390 4.390
20 H 0.087 0.913
21 C -0.248 4.248
22 N -0.584 5.584
23 Si 0.795 3.205
24 H -0.188 1.188
25 H -0.223 1.223
26 H -0.216 1.216
27 C 0.013 3.987
28 C -0.147 4.147
29 H 0.117 0.883
30 H 0.065 0.935
31 H 0.066 0.934
32 H 0.080 0.920
33 H 0.082 0.918
34 H 0.053 0.947
35 H 0.074 0.926
36 H 0.259 0.741
37 H 0.130 0.870
38 H 0.066 0.934
39 H 0.077 0.923
40 H 0.106 0.894
41 H 0.087 0.913
42 H 0.093 0.907
43 H 0.047 0.953
44 H 0.085 0.915
45 H 0.094 0.906
46 H 0.088 0.912
47 H 0.084 0.916
48 H 0.076 0.924
49 H 0.067 0.933
50 H 0.005 0.995
51 H 0.057 0.943
52 H 0.075 0.925
53 H 0.024 0.976
54 H 0.092 0.908
55 H 0.105 0.895
Dipole moment (debyes) X Y Z Total
from point charges -21.754 -4.809 7.908 23.641
hybrid contribution 1.173 0.346 -1.012 1.587
sum -20.582 -4.464 6.896 22.161
Atomic orbital electron populations
1.22900 0.79401 1.03789 1.00610 1.87519 1.21302 1.28148 1.95480
1.22527 0.90849 0.84769 1.01212 1.20687 0.94321 0.96108 0.94049
1.21170 0.96680 0.83256 0.97100 1.46164 1.49554 1.14015 1.25391
1.20581 0.79929 0.87210 0.81216 1.90631 1.40046 1.78908 1.38278
1.22637 0.99486 0.92059 1.01698 0.87579 1.22819 0.98498 0.99091
0.95599 1.23048 0.96373 1.00885 0.96345 1.21711 0.91948 0.97357
0.94455 1.21795 1.00102 0.95183 1.02437 1.21607 0.98538 0.95633
1.02153 1.21908 0.96567 0.99618 0.96605 1.20516 0.89841 0.85750
0.98194 1.44327 1.44818 1.15396 1.28656 1.19595 1.10464 0.92530
1.16437 0.91307 1.25811 0.99058 0.96659 1.03282 1.70229 1.42134
1.05422 1.40591 0.85209 0.77530 0.78144 0.79582 1.18816 1.22275
1.21638 1.21069 0.93966 0.94393 0.89317 1.21844 0.95573 0.94448
1.02885 0.88314 0.93471 0.93357 0.91994 0.91837 0.94692 0.92569
0.74113 0.86954 0.93415 0.92348 0.89424 0.91277 0.90698 0.95346
0.91461 0.90650 0.91229 0.91648 0.92419 0.93296 0.99517 0.94321
0.92497 0.97628 0.90770 0.89511
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.39 10.49 113.37 1.19 1.58 16
2 O -0.41 -8.42 6.73 -148.98 -1.00 -9.43 16
3 C 0.08 1.85 4.80 71.98 0.35 2.19 16
4 C -0.05 -1.55 0.51 -52.15 -0.03 -1.58 16
5 C 0.14 4.96 3.81 86.38 0.33 5.29 16
6 N -0.70 -21.92 4.63 -463.04 -2.14 -24.06 16
7 C 0.52 17.60 5.56 87.66 0.49 18.09 16
8 O -0.60 -25.34 15.36 -3.04 -0.05 -25.39 16
9 C -0.14 -3.41 3.85 -11.01 -0.04 -3.45 16
10 H 0.11 2.32 8.10 -2.39 -0.02 2.30 16
11 C -0.12 -2.91 7.09 31.22 0.22 -2.69 16
12 C -0.13 -2.81 6.81 31.21 0.21 -2.60 16
13 C -0.05 -1.02 1.34 -51.66 -0.07 -1.08 16
14 C -0.14 -2.63 8.33 71.98 0.60 -2.03 16
15 C -0.12 -1.50 9.07 71.98 0.65 -0.84 16
16 C -0.11 -3.96 4.59 30.66 0.14 -3.81 16
17 C 0.18 9.01 4.83 86.35 0.42 9.43 16
18 N -0.61 -31.01 3.00 -699.16 -2.09 -33.10 16
19 C -0.26 -14.52 9.59 84.03 0.81 -13.71 16
20 H 0.07 3.72 7.88 -2.91 -0.02 3.69 16
21 C -0.05 -3.03 4.93 84.86 0.42 -2.61 16
22 N -0.94 -57.37 11.14 21.65 0.24 -57.13 16
23 Si 0.97 45.68 29.59 68.60 2.03 47.71 16
24 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16
25 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16
26 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16
27 C 0.14 5.77 6.04 86.36 0.52 6.29 16
28 C -0.11 -3.37 4.90 30.67 0.15 -3.22 16
29 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16
30 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16
31 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16
32 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16
33 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16
34 H 0.03 1.56 4.98 -2.38 -0.01 1.55 16
35 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16
36 H 0.42 11.64 4.70 -92.71 -0.44 11.20 16
37 H 0.11 1.99 7.65 -2.39 -0.02 1.97 16
38 H 0.05 1.44 7.63 -2.39 -0.02 1.42 16
39 H 0.06 1.62 7.41 -2.39 -0.02 1.60 16
40 H 0.09 1.47 8.10 -2.39 -0.02 1.45 16
41 H 0.07 1.24 7.61 -2.39 -0.02 1.23 16
42 H 0.07 1.11 8.13 -2.39 -0.02 1.09 16
43 H 0.03 0.70 7.29 -2.38 -0.02 0.68 16
44 H 0.07 0.75 7.34 -2.39 -0.02 0.73 16
45 H 0.07 0.73 8.13 -2.39 -0.02 0.71 16
46 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16
47 H 0.06 2.23 6.50 -2.39 -0.02 2.22 16
48 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16
49 H 0.05 2.76 6.01 -2.39 -0.01 2.75 16
50 H -0.01 -0.73 6.70 -2.39 -0.02 -0.75 16
51 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16
52 H 0.06 2.31 7.93 -2.39 -0.02 2.29 16
53 H 0.01 0.26 6.70 -2.39 -0.02 0.24 16
54 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16
55 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16
Total: -1.00 -73.20 406.88 3.76 -69.44
By element:
Atomic # 1 Polarization: 26.31 SS G_CDS: 0.42 Total: 26.73 kcal
Atomic # 6 Polarization: -1.13 SS G_CDS: 6.35 Total: 5.23 kcal
Atomic # 7 Polarization: -110.29 SS G_CDS: -4.00 Total: -114.29 kcal
Atomic # 8 Polarization: -33.76 SS G_CDS: -1.05 Total: -34.81 kcal
Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal
Total: -73.20 3.76 -69.44 kcal
The number of atoms in the molecule is 55
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001162424457.mol2 55
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 2.645 kcal
(2) G-P(sol) polarization free energy of solvation -73.198 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.554 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.759 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.439 kcal
(6) G-S(sol) free energy of system = (1) + (5) -66.795 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.23 seconds