Wall clock time and date at job start Tue Mar 31 2020 21:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.57363 * 2 1 4 4 C 1.53183 * 109.50950 * 239.83645 * 2 1 3 5 5 C 1.53179 * 109.04755 * 297.06177 * 4 2 1 6 6 C 1.53086 * 109.16330 * 303.03232 * 5 4 2 7 7 H 1.09007 * 109.47946 * 297.61977 * 6 5 4 8 8 C 1.52997 * 109.49118 * 177.59929 * 6 5 4 9 9 C 1.50699 * 109.47267 * 175.04816 * 8 6 5 10 10 O 1.21272 * 120.00464 * 359.97438 * 9 8 6 11 11 N 1.34785 * 119.99927 * 180.02562 * 9 8 6 12 12 C 1.46500 * 119.99975 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.47042 * 179.97438 * 12 11 9 14 14 C 1.52997 * 109.46968 * 174.92940 * 13 12 11 15 15 C 1.52998 * 115.54756 * 65.29167 * 14 13 12 16 16 N 1.46498 * 109.47548 * 65.14820 * 15 14 13 17 17 C 1.36929 * 120.00133 * 175.04167 * 16 15 14 18 18 H 1.08001 * 120.00120 * 0.02562 * 17 16 15 19 19 C 1.38819 * 119.99869 * 179.97438 * 17 16 15 20 20 N 1.31618 * 119.99989 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99779 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47213 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47067 * 120.00218 * 21 19 17 24 24 H 1.48501 * 109.46920 * 240.00250 * 21 19 17 25 25 C 1.52995 * 117.49898 * 279.61825 * 14 13 12 26 26 C 1.52998 * 117.49755 * 210.96024 * 14 13 12 27 27 O 1.42896 * 109.42112 * 57.60310 * 6 5 4 28 28 C 1.42905 * 114.09809 * 298.84573 * 27 6 5 29 29 H 1.09001 * 109.46449 * 299.84152 * 1 2 3 30 30 H 1.08997 * 109.46997 * 59.83618 * 1 2 3 31 31 H 1.09004 * 109.47135 * 179.84294 * 1 2 3 32 32 H 1.09004 * 109.47195 * 180.15921 * 3 2 1 33 33 H 1.09005 * 109.47098 * 300.15861 * 3 2 1 34 34 H 1.09002 * 109.47289 * 60.16036 * 3 2 1 35 35 H 1.08996 * 109.53281 * 177.19761 * 4 2 1 36 36 H 1.09002 * 109.61613 * 56.97883 * 4 2 1 37 37 H 1.08992 * 109.52084 * 183.11763 * 5 4 2 38 38 H 1.09010 * 109.51704 * 62.93176 * 5 4 2 39 39 H 1.09000 * 109.47117 * 295.04793 * 8 6 5 40 40 H 1.09003 * 109.47528 * 55.04563 * 8 6 5 41 41 H 0.97004 * 119.99955 * 359.97438 * 11 9 8 42 42 H 1.09004 * 109.46569 * 299.99325 * 12 11 9 43 43 H 1.08993 * 109.47233 * 59.99081 * 12 11 9 44 44 H 1.09005 * 109.46988 * 294.92958 * 13 12 11 45 45 H 1.09007 * 109.47241 * 54.92678 * 13 12 11 46 46 H 1.09006 * 109.47060 * 185.14538 * 15 14 13 47 47 H 1.09001 * 109.47300 * 305.14131 * 15 14 13 48 48 H 0.97001 * 119.99299 * 355.04134 * 16 15 14 49 49 H 0.96994 * 119.99779 * 179.97438 * 20 19 17 50 50 H 1.09003 * 117.49960 * 0.02562 * 25 14 13 51 51 H 1.09008 * 117.49936 * 145.02208 * 25 14 13 52 52 H 1.08999 * 117.49855 * 214.98108 * 26 14 13 53 53 H 1.09004 * 117.49800 * 359.97438 * 26 14 13 54 54 H 1.09006 * 109.47709 * 181.13660 * 28 27 6 55 55 H 1.08995 * 109.48169 * 301.15838 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0426 1.4415 0.0000 4 6 2.0416 -0.7255 -1.2484 5 6 1.5877 -2.1876 -1.1981 6 6 2.0972 -2.8278 0.0958 7 1 3.1872 -2.8196 0.1007 8 6 1.5976 -4.2713 0.1823 9 6 2.1976 -4.9388 1.3929 10 8 2.9510 -4.3211 2.1150 11 7 1.8977 -6.2228 1.6724 12 6 2.4805 -6.8716 2.8495 13 6 1.9809 -8.3152 2.9359 14 6 2.6857 -9.0305 4.0903 15 6 2.3717 -8.4947 5.4885 16 7 0.9576 -8.7255 5.7939 17 6 0.4664 -8.4199 7.0350 18 1 1.1214 -8.0084 7.7887 19 6 -0.8737 -8.6382 7.3241 20 7 -1.6720 -9.1393 6.4055 21 14 -1.5439 -8.2207 9.0170 22 1 -0.4510 -7.6746 9.8613 23 1 -2.6215 -7.2073 8.8867 24 1 -2.0921 -9.4477 9.6488 25 6 4.0993 -9.5578 3.8367 26 6 2.9261 -10.5347 3.9476 27 8 1.6101 -2.0869 1.2164 28 6 2.0417 -0.7249 1.2475 29 1 -0.3632 0.5114 0.8914 30 1 -0.3633 0.5164 -0.8885 31 1 -0.3633 -1.0277 -0.0028 32 1 3.1327 1.4396 -0.0029 33 1 1.6779 1.9569 -0.8886 34 1 1.6826 1.9552 0.8914 35 1 3.1304 -0.6825 -1.2743 36 1 1.6364 -0.2484 -2.1407 37 1 1.9940 -2.7248 -2.0550 38 1 0.4988 -2.2319 -1.2221 39 1 0.5109 -4.2752 0.2665 40 1 1.8944 -4.8130 -0.7158 41 1 1.2953 -6.7171 1.0946 42 1 3.5673 -6.8673 2.7659 43 1 2.1830 -6.3301 3.7474 44 1 0.9048 -8.3175 3.1099 45 1 2.1989 -8.8317 2.0011 46 1 2.9908 -9.0103 6.2227 47 1 2.5812 -7.4255 5.5235 48 1 0.3693 -9.0948 5.1168 49 1 -2.6082 -9.2921 6.6076 50 1 4.5274 -9.3948 2.8476 51 1 4.8057 -9.5234 4.6662 52 1 2.8610 -11.1426 4.8501 53 1 2.5818 -11.0148 3.0316 54 1 1.6454 -0.2384 2.1388 55 1 3.1309 -0.6891 1.2677 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166264913.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:50 Heat of formation + Delta-G solvation = -96.519717 kcal Electronic energy + Delta-G solvation = -29907.892183 eV Core-core repulsion = 25943.889088 eV Total energy + Delta-G solvation = -3964.003095 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 5.98 seconds Orbital eigenvalues (eV) -41.24534 -40.32724 -39.45866 -36.35740 -35.99509 -35.67963 -34.16502 -32.79572 -31.65247 -30.10638 -28.18855 -27.78988 -26.96434 -25.57020 -24.65059 -24.14811 -23.03279 -22.53071 -21.42500 -19.96188 -19.79555 -19.02184 -17.84986 -17.47936 -17.19029 -16.79657 -16.52947 -16.47576 -16.09129 -15.94638 -15.60150 -15.32165 -15.11978 -14.97132 -14.85239 -14.52496 -14.23691 -13.92656 -13.90449 -13.52504 -13.17198 -13.04799 -13.03592 -12.93935 -12.83843 -12.82377 -12.77710 -12.45826 -12.43436 -12.28426 -12.13926 -11.95264 -11.93988 -11.81456 -11.76090 -11.36072 -11.15759 -11.11146 -10.91602 -10.80327 -10.53867 -10.20265 -10.02731 -8.98174 -7.96339 -5.23538 1.44474 1.45570 1.55405 1.74206 2.24602 2.53146 2.88400 2.91626 3.36689 3.66865 3.72141 3.79500 3.82629 3.83714 3.86743 4.00030 4.04531 4.08333 4.16251 4.22414 4.32712 4.40312 4.46545 4.50115 4.55566 4.62510 4.64054 4.67356 4.73176 4.79780 4.82507 4.84185 4.89316 4.92959 4.95050 4.99913 5.02959 5.07042 5.09089 5.13439 5.20579 5.24215 5.27482 5.30661 5.34382 5.36540 5.40053 5.47120 5.52224 5.54421 6.26612 6.39072 6.64421 7.33526 7.36143 8.09695 8.35840 9.27263 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011019 B = 0.002299 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2540.469587 B =12173.851842 C =13931.349419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.099 4.099 3 C -0.137 4.137 4 C -0.109 4.109 5 C -0.145 4.145 6 C 0.101 3.899 7 H 0.047 0.953 8 C -0.128 4.128 9 C 0.504 3.496 10 O -0.581 6.581 11 N -0.722 5.722 12 C 0.135 3.865 13 C -0.073 4.073 14 C -0.142 4.142 15 C 0.186 3.814 16 N -0.735 5.735 17 C -0.245 4.245 18 H 0.069 0.931 19 C -0.073 4.073 20 N -0.965 5.965 21 Si 0.970 3.030 22 H -0.270 1.270 23 H -0.293 1.293 24 H -0.289 1.289 25 C -0.149 4.149 26 C -0.162 4.162 27 O -0.393 6.393 28 C 0.069 3.931 29 H 0.047 0.953 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.055 0.945 35 H 0.063 0.937 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.113 0.887 40 H 0.146 0.854 41 H 0.415 0.585 42 H 0.066 0.934 43 H 0.029 0.971 44 H 0.055 0.945 45 H 0.098 0.902 46 H 0.017 0.983 47 H 0.009 0.991 48 H 0.377 0.623 49 H 0.252 0.748 50 H 0.118 0.882 51 H 0.094 0.906 52 H 0.078 0.922 53 H 0.110 0.890 54 H 0.083 0.917 55 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.226 13.482 -23.625 28.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.099 4.099 3 C -0.195 4.195 4 C -0.147 4.147 5 C -0.182 4.182 6 C 0.043 3.957 7 H 0.065 0.935 8 C -0.167 4.167 9 C 0.292 3.708 10 O -0.461 6.461 11 N -0.374 5.374 12 C 0.011 3.989 13 C -0.110 4.110 14 C -0.143 4.143 15 C 0.060 3.940 16 N -0.377 5.377 17 C -0.377 4.377 18 H 0.087 0.913 19 C -0.265 4.265 20 N -0.616 5.616 21 Si 0.799 3.201 22 H -0.195 1.195 23 H -0.220 1.220 24 H -0.216 1.216 25 C -0.186 4.186 26 C -0.199 4.199 27 O -0.312 6.312 28 C -0.008 4.008 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.102 0.898 37 H 0.115 0.885 38 H 0.097 0.903 39 H 0.131 0.869 40 H 0.164 0.836 41 H 0.251 0.749 42 H 0.084 0.916 43 H 0.047 0.953 44 H 0.074 0.926 45 H 0.116 0.884 46 H 0.035 0.965 47 H 0.027 0.973 48 H 0.209 0.791 49 H 0.060 0.940 50 H 0.136 0.864 51 H 0.112 0.888 52 H 0.096 0.904 53 H 0.128 0.872 54 H 0.101 0.899 55 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 9.676 13.901 -22.780 28.386 hybrid contribution -0.914 -0.066 1.070 1.409 sum 8.762 13.834 -21.710 27.193 Atomic orbital electron populations 1.21794 0.93768 1.01876 1.01759 1.21197 0.96856 0.96352 0.95544 1.21775 1.01040 0.94082 1.02578 1.21663 1.00752 0.94831 0.97438 1.22242 1.02559 0.96503 0.96930 1.21892 0.97181 0.90042 0.86598 0.93511 1.21844 1.03468 0.94485 0.96941 1.21288 0.80743 0.81350 0.87411 1.90692 1.38482 1.64601 1.52305 1.45975 1.49902 1.12854 1.28712 1.21048 0.97805 0.92780 0.87271 1.21073 0.99519 0.93119 0.97330 1.21418 1.00796 0.97250 0.94865 1.20250 0.85159 0.96093 0.92523 1.42420 1.05860 1.76844 1.12607 1.19633 0.93241 1.33740 0.91104 0.91349 1.25501 0.96680 1.02774 1.01567 1.69804 1.04884 1.52240 1.34693 0.85125 0.78031 0.77058 0.79880 1.19509 1.21989 1.21628 1.23091 0.89750 1.01962 1.03818 1.22976 1.02679 0.91114 1.03175 1.87963 1.73774 1.22901 1.46608 1.22660 0.97933 0.81847 0.98333 0.93376 0.91461 0.92842 0.92451 0.91132 0.92570 0.91871 0.89760 0.88536 0.90282 0.86929 0.83633 0.74862 0.91606 0.95254 0.92590 0.88392 0.96489 0.97324 0.79072 0.93960 0.86416 0.88799 0.90386 0.87157 0.89919 0.94078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 8.08 71.98 0.58 -1.48 16 2 C -0.10 -1.51 0.78 -52.09 -0.04 -1.55 16 3 C -0.14 -1.67 8.49 71.98 0.61 -1.06 16 4 C -0.11 -1.37 4.81 30.72 0.15 -1.22 16 5 C -0.14 -1.84 5.06 30.68 0.16 -1.69 16 6 C 0.10 2.03 2.19 30.62 0.07 2.09 16 7 H 0.05 1.07 7.96 -2.38 -0.02 1.06 16 8 C -0.13 -2.24 5.41 29.85 0.16 -2.08 16 9 C 0.50 13.90 7.71 87.66 0.68 14.58 16 10 O -0.58 -22.02 15.42 10.76 0.17 -21.86 16 11 N -0.72 -17.83 5.56 -463.06 -2.57 -20.40 16 12 C 0.14 4.10 5.41 86.38 0.47 4.56 16 13 C -0.07 -2.06 5.12 30.59 0.16 -1.91 16 14 C -0.14 -4.54 1.56 -52.19 -0.08 -4.62 16 15 C 0.19 7.95 5.93 86.38 0.51 8.46 16 16 N -0.73 -38.62 5.52 -343.45 -1.89 -40.52 16 17 C -0.25 -14.31 9.99 84.04 0.84 -13.47 16 18 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 19 C -0.07 -4.31 5.50 84.86 0.47 -3.84 16 20 N -0.97 -59.90 13.06 21.65 0.28 -59.62 16 21 Si 0.97 47.73 29.55 68.60 2.03 49.76 16 22 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 23 H -0.29 -14.36 7.11 99.48 0.71 -13.66 16 24 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 25 C -0.15 -3.66 9.94 30.62 0.30 -3.36 16 26 C -0.16 -4.57 9.94 30.62 0.30 -4.27 16 27 O -0.39 -10.57 9.07 -135.21 -1.23 -11.79 16 28 C 0.07 1.51 5.54 72.01 0.40 1.90 16 29 H 0.05 0.78 8.14 -2.39 -0.02 0.77 16 30 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.05 0.94 6.13 -2.38 -0.01 0.92 16 32 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 34 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.08 0.99 6.62 -2.38 -0.02 0.97 16 39 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.15 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.41 7.26 8.47 -92.71 -0.79 6.48 16 42 H 0.07 1.95 8.14 -2.39 -0.02 1.94 16 43 H 0.03 1.15 7.23 -2.39 -0.02 1.13 16 44 H 0.06 1.90 7.49 -2.38 -0.02 1.88 16 45 H 0.10 2.06 8.09 -2.38 -0.02 2.04 16 46 H 0.02 0.74 8.09 -2.38 -0.02 0.72 16 47 H 0.01 0.40 7.11 -2.39 -0.02 0.39 16 48 H 0.38 20.67 7.03 -92.71 -0.65 20.02 16 49 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 50 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 51 H 0.09 2.30 8.14 -2.38 -0.02 2.28 16 52 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 53 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 54 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 55 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -77.33 429.72 1.93 -75.40 By element: Atomic # 1 Polarization: 38.55 SS G_CDS: -0.58 Total: 37.97 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: 5.73 Total: -8.95 kcal Atomic # 7 Polarization: -116.35 SS G_CDS: -4.18 Total: -120.53 kcal Atomic # 8 Polarization: -32.59 SS G_CDS: -1.06 Total: -33.65 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 2.03 Total: 49.76 kcal Total: -77.33 1.93 -75.40 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166264913.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.119 kcal (2) G-P(sol) polarization free energy of solvation -77.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.98 seconds