Wall clock time and date at job start Tue Mar 31 2020 22:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 110.83054 * 2 1 4 4 C 1.54995 * 110.90524 * 236.35606 * 2 1 3 5 5 O 1.44582 * 103.58321 * 204.85265 * 4 2 1 6 6 C 1.43747 * 106.86915 * 39.88001 * 5 4 2 7 7 H 1.09008 * 109.87836 * 93.16912 * 6 5 4 8 8 C 1.52998 * 109.87929 * 214.16845 * 6 5 4 9 9 C 1.52999 * 109.47331 * 293.29355 * 8 6 5 10 10 C 1.50698 * 109.47048 * 179.97438 * 9 8 6 11 11 O 1.21280 * 120.00110 * 359.97438 * 10 9 8 12 12 N 1.34782 * 119.99822 * 180.02562 * 10 9 8 13 13 C 1.46493 * 120.00086 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47312 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.47318 * 185.09326 * 14 13 12 16 16 C 1.53006 * 115.55103 * 294.97459 * 15 14 13 17 17 N 1.46495 * 109.47005 * 295.12491 * 16 15 14 18 18 C 1.36940 * 120.00322 * 174.76663 * 17 16 15 19 19 H 1.07995 * 119.99180 * 0.02562 * 18 17 16 20 20 C 1.38805 * 119.99814 * 179.72164 * 18 17 16 21 21 N 1.31613 * 120.00746 * 0.28299 * 20 18 17 22 22 Si 1.86806 * 119.99454 * 180.27659 * 20 18 17 23 23 H 1.48506 * 109.46947 * 90.00542 * 22 20 18 24 24 H 1.48503 * 109.47077 * 210.00097 * 22 20 18 25 25 H 1.48499 * 109.47318 * 330.00137 * 22 20 18 26 26 C 1.53006 * 117.49967 * 80.64174 * 15 14 13 27 27 C 1.52998 * 117.50206 * 149.30405 * 15 14 13 28 28 C 1.54098 * 107.41907 * 333.66914 * 6 5 4 29 29 H 1.08998 * 109.46834 * 296.34929 * 1 2 3 30 30 H 1.08999 * 109.47081 * 56.35209 * 1 2 3 31 31 H 1.09003 * 109.46933 * 176.35178 * 1 2 3 32 32 H 1.08997 * 109.47275 * 183.64894 * 3 2 1 33 33 H 1.09003 * 109.46967 * 303.65106 * 3 2 1 34 34 H 1.09003 * 109.46856 * 63.64731 * 3 2 1 35 35 H 1.08999 * 110.62051 * 323.27020 * 4 2 1 36 36 H 1.09001 * 110.61865 * 86.12020 * 4 2 1 37 37 H 1.08995 * 109.47151 * 173.29150 * 8 6 5 38 38 H 1.09001 * 109.46888 * 53.29371 * 8 6 5 39 39 H 1.09004 * 109.46981 * 59.99711 * 9 8 6 40 40 H 1.09001 * 109.47147 * 299.99857 * 9 8 6 41 41 H 0.97000 * 119.99539 * 359.97438 * 12 10 9 42 42 H 1.09004 * 109.47273 * 59.99868 * 13 12 10 43 43 H 1.09001 * 109.46957 * 299.99951 * 13 12 10 44 44 H 1.09002 * 109.47124 * 65.09081 * 14 13 12 45 45 H 1.08998 * 109.47291 * 305.09117 * 14 13 12 46 46 H 1.08995 * 109.47304 * 175.12588 * 16 15 14 47 47 H 1.09000 * 109.47135 * 55.12292 * 16 15 14 48 48 H 0.97002 * 120.00101 * 354.76773 * 17 16 15 49 49 H 0.96995 * 120.00471 * 179.97438 * 21 20 18 50 50 H 1.09007 * 117.49666 * 215.00453 * 26 15 14 51 51 H 1.08996 * 117.49773 * 0.02562 * 26 15 14 52 52 H 1.09003 * 117.50017 * 359.97124 * 27 15 14 53 53 H 1.08995 * 117.50131 * 144.99944 * 27 15 14 54 54 H 1.09005 * 110.48699 * 120.62922 * 28 6 5 55 55 H 1.08999 * 110.48951 * 243.27880 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0741 1.4300 0.0000 4 6 2.0831 -0.8022 -1.2054 5 8 3.3955 -1.2176 -0.7634 6 6 3.2719 -1.5882 0.6200 7 1 3.0838 -2.6588 0.7015 8 6 4.5543 -1.2267 1.3720 9 6 5.7057 -2.0972 0.8645 10 6 6.9690 -1.7407 1.6049 11 8 6.9503 -0.8753 2.4544 12 7 8.1198 -2.3829 1.3222 13 6 9.3477 -2.0368 2.0422 14 6 10.4991 -2.9071 1.5346 15 6 11.7506 -2.6363 2.3719 16 6 12.3291 -1.2245 2.2564 17 7 12.8063 -1.0026 0.8893 18 6 13.2694 0.2313 0.5174 19 1 13.2832 1.0407 1.2322 20 6 13.7270 0.4398 -0.7763 21 7 13.7106 -0.5467 -1.6473 22 14 14.3659 2.1210 -1.2813 23 1 15.8257 2.1951 -1.0187 24 1 14.1122 2.3327 -2.7291 25 1 13.6680 3.1717 -0.4977 26 6 11.8575 -3.3346 3.7291 27 6 12.7370 -3.7903 2.5619 28 6 2.0826 -0.8013 1.2038 29 1 -0.3633 0.4561 0.9209 30 1 -0.3633 0.5694 -0.8555 31 1 -0.3633 -1.0256 -0.0654 32 1 3.1618 1.4050 -0.0654 33 1 1.6710 1.9721 -0.8555 34 1 1.7769 1.9318 0.9209 35 1 1.4562 -1.6704 -1.4088 36 1 2.1555 -0.1671 -2.0883 37 1 4.4110 -1.3995 2.4386 38 1 4.7910 -0.1763 1.2027 39 1 5.8490 -1.9244 -0.2022 40 1 5.4690 -3.1476 1.0338 41 1 8.1346 -3.0747 0.6424 42 1 9.2046 -2.2101 3.1088 43 1 9.5840 -0.9862 1.8733 44 1 10.7018 -2.6687 0.4905 45 1 10.2250 -3.9586 1.6206 46 1 13.1596 -1.1139 2.9536 47 1 11.5555 -0.4943 2.4942 48 1 12.7943 -1.7298 0.2474 49 1 14.0301 -0.4008 -2.5515 50 1 12.3399 -2.7882 4.5396 51 1 11.0364 -3.9873 4.0252 52 1 12.4940 -4.7428 2.0909 53 1 13.7978 -3.5439 2.6047 54 1 1.3247 -1.4843 1.5876 55 1 2.4210 -0.1252 1.9890 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167874461.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:06 Heat of formation + Delta-G solvation = -98.053736 kcal Electronic energy + Delta-G solvation = -29303.538100 eV Core-core repulsion = 25339.468486 eV Total energy + Delta-G solvation = -3964.069615 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.11379 -40.56914 -39.51039 -36.11980 -35.76901 -35.59944 -34.44581 -32.79583 -31.52243 -29.96029 -28.25357 -27.78901 -27.04001 -25.70038 -24.64967 -24.01628 -22.98296 -21.98697 -21.43192 -20.34807 -19.93620 -19.02538 -17.96822 -17.26641 -17.01749 -16.77881 -16.64679 -16.41913 -16.34886 -16.07677 -15.60154 -15.17155 -15.14867 -14.98031 -14.72749 -14.44216 -14.15492 -13.95445 -13.84853 -13.81244 -13.61449 -13.14831 -13.05772 -12.97306 -12.80972 -12.74541 -12.50245 -12.41037 -12.28902 -12.21502 -12.18706 -12.06967 -11.94750 -11.86304 -11.63394 -11.53260 -11.38550 -11.11029 -10.94541 -10.83501 -10.55033 -10.49554 -10.07409 -8.98467 -7.96194 -5.23587 1.44253 1.45802 1.54264 1.66148 2.22493 2.52905 2.90769 2.95166 3.36423 3.48830 3.68248 3.79683 3.81510 3.86969 3.90539 3.96557 3.99743 4.07547 4.15435 4.22592 4.28172 4.35216 4.43267 4.47706 4.50425 4.57527 4.64023 4.70631 4.73022 4.75957 4.82299 4.83784 4.86923 4.91357 4.94817 4.98354 5.03806 5.06186 5.08423 5.12256 5.18985 5.20012 5.27074 5.30280 5.33334 5.34217 5.36323 5.42036 5.46784 5.49554 6.02309 6.26395 6.58099 7.28137 7.33392 8.09706 8.35671 9.27008 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010718 B = 0.002093 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2611.917191 B =13374.819285 C =15229.658336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.099 4.099 3 C -0.137 4.137 4 C 0.049 3.951 5 O -0.395 6.395 6 C 0.078 3.922 7 H 0.086 0.914 8 C -0.098 4.098 9 C -0.128 4.128 10 C 0.504 3.496 11 O -0.591 6.591 12 N -0.720 5.720 13 C 0.133 3.867 14 C -0.073 4.073 15 C -0.143 4.143 16 C 0.187 3.813 17 N -0.735 5.735 18 C -0.246 4.246 19 H 0.068 0.932 20 C -0.073 4.073 21 N -0.965 5.965 22 Si 0.970 3.030 23 H -0.285 1.285 24 H -0.293 1.293 25 H -0.275 1.275 26 C -0.149 4.149 27 C -0.164 4.164 28 C -0.143 4.143 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.040 0.960 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.049 0.951 39 H 0.101 0.899 40 H 0.124 0.876 41 H 0.415 0.585 42 H 0.068 0.932 43 H 0.032 0.968 44 H 0.055 0.945 45 H 0.096 0.904 46 H 0.012 0.988 47 H 0.015 0.985 48 H 0.377 0.623 49 H 0.251 0.749 50 H 0.095 0.905 51 H 0.117 0.883 52 H 0.110 0.890 53 H 0.079 0.921 54 H 0.095 0.905 55 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.919 -9.015 5.891 29.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.099 4.099 3 C -0.195 4.195 4 C -0.027 4.027 5 O -0.315 6.315 6 C 0.021 3.979 7 H 0.104 0.896 8 C -0.136 4.136 9 C -0.167 4.167 10 C 0.293 3.707 11 O -0.472 6.472 12 N -0.372 5.372 13 C 0.009 3.991 14 C -0.111 4.111 15 C -0.144 4.144 16 C 0.060 3.940 17 N -0.377 5.377 18 C -0.378 4.378 19 H 0.086 0.914 20 C -0.265 4.265 21 N -0.615 5.615 22 Si 0.799 3.201 23 H -0.212 1.212 24 H -0.219 1.219 25 H -0.200 1.200 26 C -0.186 4.186 27 C -0.201 4.201 28 C -0.181 4.181 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.059 0.941 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.109 0.891 37 H 0.099 0.901 38 H 0.068 0.932 39 H 0.119 0.881 40 H 0.142 0.858 41 H 0.251 0.749 42 H 0.086 0.914 43 H 0.050 0.950 44 H 0.074 0.926 45 H 0.115 0.885 46 H 0.030 0.970 47 H 0.033 0.967 48 H 0.209 0.791 49 H 0.060 0.940 50 H 0.113 0.887 51 H 0.135 0.865 52 H 0.128 0.872 53 H 0.098 0.902 54 H 0.113 0.887 55 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -27.686 -8.226 6.407 29.585 hybrid contribution 0.860 0.840 -0.928 1.519 sum -26.826 -7.386 5.480 28.359 Atomic orbital electron populations 1.21728 0.91841 1.02746 1.02657 1.22124 0.97257 0.95684 0.94861 1.21778 1.00301 0.95053 1.02328 1.23824 0.83697 0.97948 0.97207 1.88920 1.30528 1.86471 1.25540 1.22829 0.94379 0.99253 0.81444 0.89590 1.21493 0.92895 0.99389 0.99804 1.21646 0.90561 1.03409 1.01119 1.21427 0.86169 0.80498 0.82638 1.90674 1.86860 1.33742 1.35915 1.46006 1.08365 1.41006 1.41807 1.21090 0.83469 0.98215 0.96289 1.21066 0.91225 1.00041 0.98741 1.21430 0.98405 0.93374 1.01165 1.20250 0.94502 0.93058 0.86179 1.42413 1.76036 1.10273 1.08986 1.19587 1.32941 0.89871 0.95365 0.91365 1.25497 1.03355 1.01144 0.96535 1.69795 1.54533 1.32499 1.04720 0.85198 0.78142 0.79902 0.76881 1.21201 1.21915 1.19985 1.23093 1.02619 1.02398 0.90482 1.22994 0.96399 0.97980 1.02688 1.23145 0.97394 0.99381 0.98171 0.91877 0.91795 0.91416 0.94111 0.91742 0.92065 0.90726 0.89100 0.90073 0.93239 0.88061 0.85784 0.74866 0.91407 0.94993 0.92625 0.88531 0.96987 0.96678 0.79094 0.93973 0.88689 0.86459 0.87200 0.90234 0.88690 0.90791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.10 8.55 71.98 0.62 -0.49 16 2 C -0.10 -1.24 0.99 -50.88 -0.05 -1.29 16 3 C -0.14 -2.05 8.53 71.98 0.61 -1.44 16 4 C 0.05 0.70 6.63 72.66 0.48 1.18 16 5 O -0.39 -7.78 10.82 -148.98 -1.61 -9.39 16 6 C 0.08 1.23 3.40 30.96 0.11 1.34 16 7 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 8 C -0.10 -1.97 3.99 30.59 0.12 -1.84 16 9 C -0.13 -2.46 5.61 29.85 0.17 -2.30 16 10 C 0.50 14.04 7.83 87.66 0.69 14.73 16 11 O -0.59 -21.91 15.98 -3.03 -0.05 -21.96 16 12 N -0.72 -18.28 5.56 -463.07 -2.57 -20.85 16 13 C 0.13 4.06 5.40 86.38 0.47 4.53 16 14 C -0.07 -2.10 5.13 30.59 0.16 -1.94 16 15 C -0.14 -4.54 1.54 -52.18 -0.08 -4.62 16 16 C 0.19 7.90 5.93 86.38 0.51 8.41 16 17 N -0.73 -38.45 5.45 -343.47 -1.87 -40.32 16 18 C -0.25 -14.30 9.99 84.03 0.84 -13.46 16 19 H 0.07 3.89 7.83 -2.91 -0.02 3.87 16 20 C -0.07 -4.31 5.50 84.86 0.47 -3.84 16 21 N -0.96 -59.82 13.06 21.65 0.28 -59.53 16 22 Si 0.97 47.72 29.55 68.60 2.03 49.74 16 23 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 24 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 25 H -0.27 -13.03 7.11 99.48 0.71 -12.33 16 26 C -0.15 -3.63 9.95 30.62 0.30 -3.33 16 27 C -0.16 -4.56 9.94 30.62 0.30 -4.26 16 28 C -0.14 -1.85 5.81 31.58 0.18 -1.66 16 29 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.07 0.44 8.09 -2.39 -0.02 0.42 16 32 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.07 0.81 8.01 -2.39 -0.02 0.80 16 36 H 0.09 1.24 8.06 -2.39 -0.02 1.22 16 37 H 0.08 1.60 8.10 -2.39 -0.02 1.58 16 38 H 0.05 1.27 8.10 -2.39 -0.02 1.26 16 39 H 0.10 1.98 7.89 -2.38 -0.02 1.96 16 40 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.41 7.82 8.47 -92.71 -0.79 7.04 16 42 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 43 H 0.03 1.25 7.23 -2.39 -0.02 1.23 16 44 H 0.06 1.92 7.73 -2.39 -0.02 1.91 16 45 H 0.10 2.08 8.09 -2.39 -0.02 2.06 16 46 H 0.01 0.53 8.09 -2.39 -0.02 0.51 16 47 H 0.02 0.68 7.11 -2.39 -0.02 0.66 16 48 H 0.38 20.64 7.33 -92.71 -0.68 19.96 16 49 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 50 H 0.09 2.29 8.14 -2.38 -0.02 2.27 16 51 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 52 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 53 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 54 H 0.09 0.86 7.86 -2.38 -0.02 0.85 16 55 H 0.07 1.08 7.42 -2.39 -0.02 1.06 16 Total: -1.00 -74.88 437.89 1.49 -73.40 By element: Atomic # 1 Polarization: 39.81 SS G_CDS: -0.61 Total: 39.20 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: 5.90 Total: -10.28 kcal Atomic # 7 Polarization: -116.55 SS G_CDS: -4.16 Total: -120.71 kcal Atomic # 8 Polarization: -29.69 SS G_CDS: -1.66 Total: -31.35 kcal Atomic # 14 Polarization: 47.72 SS G_CDS: 2.03 Total: 49.74 kcal Total: -74.88 1.49 -73.40 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167874461.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.659 kcal (2) G-P(sol) polarization free energy of solvation -74.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds