Wall clock time and date at job start Tue Mar 31 2020 21:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 119.99680 * 2 1 4 4 H 1.48499 * 109.47108 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47447 * 300.00375 * 3 2 1 6 6 H 1.48502 * 109.46670 * 60.00745 * 3 2 1 7 7 C 1.38812 * 120.00363 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00304 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99804 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99862 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47002 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.46895 * 180.02562 * 11 10 9 13 13 N 1.46500 * 109.47015 * 179.97438 * 12 11 10 14 14 C 1.46501 * 120.00155 * 269.99904 * 13 12 11 15 15 C 1.53001 * 109.47087 * 279.63917 * 14 13 12 16 16 C 1.54261 * 110.03243 * 294.80615 * 15 14 13 17 17 C 1.54886 * 104.19351 * 217.10679 * 16 15 14 18 18 C 1.54888 * 102.75070 * 37.94524 * 17 16 15 19 19 C 1.53874 * 110.02743 * 177.64007 * 15 14 13 20 20 C 1.34773 * 120.00053 * 89.99856 * 13 12 11 21 21 O 1.21283 * 120.00187 * 6.33647 * 20 13 12 22 22 C 1.50699 * 120.00303 * 186.33680 * 20 13 12 23 23 H 1.09006 * 109.47888 * 317.03566 * 22 20 13 24 24 C 1.53087 * 109.49350 * 77.06092 * 22 20 13 25 25 C 1.53174 * 109.16804 * 177.59916 * 24 22 20 26 26 C 1.53180 * 109.03454 * 303.02398 * 25 24 22 27 27 C 1.53094 * 109.16402 * 56.97758 * 26 25 24 28 28 O 1.42898 * 109.48167 * 197.01382 * 22 20 13 29 29 H 0.96997 * 120.00442 * 359.97438 * 1 2 3 30 30 H 0.97001 * 120.00309 * 0.02562 * 9 7 2 31 31 H 1.09002 * 109.47044 * 59.99593 * 10 9 7 32 32 H 1.09008 * 109.47069 * 299.99906 * 10 9 7 33 33 H 1.08991 * 109.47273 * 60.00072 * 11 10 9 34 34 H 1.09000 * 109.46863 * 299.99564 * 11 10 9 35 35 H 1.09000 * 109.46912 * 59.99995 * 12 11 10 36 36 H 1.08994 * 109.47034 * 299.99912 * 12 11 10 37 37 H 1.09005 * 109.46838 * 39.63934 * 14 13 12 38 38 H 1.08997 * 109.47388 * 159.63573 * 14 13 12 39 39 H 1.08998 * 110.01538 * 56.25219 * 15 14 13 40 40 H 1.08995 * 110.48855 * 335.78571 * 16 15 14 41 41 H 1.09002 * 110.48394 * 98.43170 * 16 15 14 42 42 H 1.09001 * 110.75800 * 279.62159 * 17 16 15 43 43 H 1.09006 * 110.75619 * 156.26409 * 17 16 15 44 44 H 1.09006 * 110.48108 * 203.37850 * 18 17 16 45 45 H 1.08995 * 110.59667 * 80.79378 * 18 17 16 46 46 H 1.09004 * 110.03488 * 238.56791 * 19 15 14 47 47 H 1.08993 * 110.03828 * 359.95276 * 19 15 14 48 48 H 1.09007 * 109.52236 * 297.50740 * 24 22 20 49 49 H 1.08998 * 109.52266 * 57.69266 * 24 22 20 50 50 H 1.08998 * 109.54769 * 183.15033 * 25 24 22 51 51 H 1.09009 * 109.61496 * 62.93151 * 25 24 22 52 52 H 1.08999 * 109.52238 * 297.06665 * 26 25 24 53 53 H 1.09005 * 109.51787 * 176.88404 * 26 25 24 54 54 H 1.08999 * 109.47941 * 182.40830 * 27 26 25 55 55 H 1.08991 * 109.48045 * 62.37711 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8913 2.3966 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 6 1.0640 -4.8197 -0.0012 12 6 1.8291 -6.1447 -0.0005 13 7 0.8772 -7.2582 -0.0005 14 6 0.4008 -7.8147 1.2682 15 6 1.4518 -8.7735 1.8312 16 6 1.6100 -9.9914 0.8979 17 6 1.8340 -11.1825 1.8623 18 6 0.8841 -10.8519 3.0402 19 6 0.9902 -9.3205 3.1934 20 6 0.4397 -7.7708 -1.1677 21 8 0.9185 -7.3897 -2.2148 22 6 -0.6446 -8.8174 -1.1718 23 1 -0.4510 -9.5444 -0.3830 24 6 -2.0004 -8.1494 -0.9288 25 6 -3.1029 -9.2108 -0.9941 26 6 -3.0374 -9.9162 -2.3522 27 6 -1.6415 -10.5160 -2.5402 28 8 -0.6619 -9.4807 -2.4374 29 1 -0.4850 0.8400 0.0004 30 1 0.3556 -2.3881 -0.0005 31 1 2.6849 -3.7144 0.8894 32 1 2.6849 -3.7144 -0.8906 33 1 0.4377 -4.7618 -0.8913 34 1 0.4371 -4.7622 0.8886 35 1 2.4551 -6.2023 0.8899 36 1 2.4564 -6.2024 -0.8900 37 1 0.2295 -7.0056 1.9783 38 1 -0.5312 -8.3547 1.1010 39 1 2.4064 -8.2587 1.9397 40 1 0.7046 -10.1417 0.3100 41 1 2.4730 -9.8619 0.2447 42 1 2.8700 -11.2170 2.1994 43 1 1.5494 -12.1220 1.3885 44 1 1.2174 -11.3504 3.9505 45 1 -0.1390 -11.1414 2.8006 46 1 1.7213 -9.0720 3.9628 47 1 0.0179 -8.9024 3.4537 48 1 -2.0042 -7.6803 0.0552 49 1 -2.1765 -7.3937 -1.6942 50 1 -4.0759 -8.7335 -0.8775 51 1 -2.9566 -9.9399 -0.1971 52 1 -3.2346 -9.1962 -3.1465 53 1 -3.7830 -10.7107 -2.3863 54 1 -1.5757 -10.9825 -3.5232 55 1 -1.4610 -11.2652 -1.7695 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177281303.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:58 Heat of formation + Delta-G solvation = -110.848882 kcal Electronic energy + Delta-G solvation = -31192.153454 eV Core-core repulsion = 27227.529000 eV Total energy + Delta-G solvation = -3964.624454 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -41.80028 -39.78558 -39.04064 -37.44681 -36.32286 -34.70133 -34.18148 -32.68791 -31.62546 -30.45733 -29.51224 -27.66883 -26.41235 -25.66616 -24.89964 -24.20968 -22.57275 -21.76499 -21.24501 -20.81841 -20.08453 -19.14910 -18.63813 -17.80078 -16.91006 -16.84169 -16.62476 -16.42544 -16.21636 -15.98199 -15.70734 -15.49955 -15.28797 -15.18322 -14.98673 -14.51062 -14.41950 -14.13672 -13.98131 -13.68119 -13.50423 -13.47280 -13.08042 -12.84258 -12.79676 -12.62206 -12.44551 -12.19944 -12.08684 -12.03631 -11.98422 -11.91907 -11.89004 -11.86695 -11.83800 -11.74542 -11.49742 -11.40742 -11.24758 -10.97802 -10.60571 -10.46736 -9.71001 -9.04719 -7.98083 -5.28142 1.44991 1.45894 1.47360 1.57537 1.68348 2.54091 2.86592 3.35398 3.38456 3.55890 3.70624 3.73838 3.79253 3.85157 3.88248 3.93127 3.97335 4.00450 4.13822 4.15730 4.28709 4.39647 4.43064 4.48310 4.54719 4.56511 4.60435 4.63154 4.69668 4.73362 4.76094 4.81065 4.83242 4.89241 4.90013 4.92526 5.00099 5.05587 5.07522 5.14476 5.14965 5.24346 5.27118 5.31282 5.33195 5.36374 5.46338 5.48718 5.51838 5.56567 6.08008 6.24104 6.35661 7.09220 7.29715 8.04235 8.28285 9.25959 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011484 B = 0.002701 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2437.586757 B =10365.206967 C =11829.896622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.077 4.077 3 Si 0.978 3.022 4 H -0.265 1.265 5 H -0.293 1.293 6 H -0.288 1.288 7 C -0.249 4.249 8 H 0.077 0.923 9 N -0.748 5.748 10 C 0.155 3.845 11 C -0.119 4.119 12 C 0.128 3.872 13 N -0.599 5.599 14 C 0.101 3.899 15 C -0.107 4.107 16 C -0.128 4.128 17 C -0.123 4.123 18 C -0.121 4.121 19 C -0.116 4.116 20 C 0.513 3.487 21 O -0.575 6.575 22 C 0.074 3.926 23 H 0.116 0.884 24 C -0.149 4.149 25 C -0.115 4.115 26 C -0.158 4.158 27 C 0.051 3.949 28 O -0.393 6.393 29 H 0.252 0.748 30 H 0.373 0.627 31 H 0.035 0.965 32 H 0.011 0.989 33 H 0.035 0.965 34 H 0.073 0.927 35 H 0.106 0.894 36 H 0.064 0.936 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.044 0.956 42 H 0.063 0.937 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.068 0.932 47 H 0.080 0.920 48 H 0.095 0.905 49 H 0.048 0.952 50 H 0.082 0.918 51 H 0.092 0.908 52 H 0.054 0.946 53 H 0.102 0.898 54 H 0.104 0.896 55 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.964 -31.507 7.297 32.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.269 4.269 3 Si 0.806 3.194 4 H -0.190 1.190 5 H -0.221 1.221 6 H -0.215 1.215 7 C -0.380 4.380 8 H 0.095 0.905 9 N -0.391 5.391 10 C 0.029 3.971 11 C -0.158 4.158 12 C 0.005 3.995 13 N -0.331 5.331 14 C -0.021 4.021 15 C -0.127 4.127 16 C -0.165 4.165 17 C -0.160 4.160 18 C -0.159 4.159 19 C -0.154 4.154 20 C 0.301 3.699 21 O -0.453 6.453 22 C 0.014 3.986 23 H 0.133 0.867 24 C -0.187 4.187 25 C -0.152 4.152 26 C -0.196 4.196 27 C -0.025 4.025 28 O -0.312 6.312 29 H 0.061 0.939 30 H 0.204 0.796 31 H 0.053 0.947 32 H 0.029 0.971 33 H 0.054 0.946 34 H 0.091 0.909 35 H 0.125 0.875 36 H 0.082 0.918 37 H 0.112 0.888 38 H 0.119 0.881 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.063 0.937 42 H 0.082 0.918 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.093 0.907 46 H 0.087 0.913 47 H 0.098 0.902 48 H 0.113 0.887 49 H 0.067 0.933 50 H 0.101 0.899 51 H 0.110 0.890 52 H 0.073 0.927 53 H 0.120 0.880 54 H 0.122 0.878 55 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.409 -31.170 6.597 32.164 hybrid contribution 0.019 1.447 -0.432 1.510 sum -4.390 -29.723 6.164 30.672 Atomic orbital electron populations 1.69831 1.06714 1.26140 1.59455 1.25642 0.96496 1.01320 1.03488 0.85013 0.78202 0.79384 0.76795 1.18955 1.22065 1.21528 1.19708 0.91586 0.85330 1.41393 0.90546 1.42597 1.05631 1.01366 1.89510 1.20686 0.93972 0.84660 0.97830 1.21846 0.98564 0.94088 1.01351 1.21273 0.90973 0.83617 1.03644 1.47891 1.45201 1.33780 1.06202 1.22240 0.97884 0.97978 0.83981 1.22189 0.99070 0.95612 0.95823 1.22616 1.00998 0.95270 0.97634 1.22488 0.99970 0.97465 0.96103 1.22362 0.99973 0.95288 0.98242 1.22137 1.02308 0.95808 0.95114 1.20856 0.82955 0.82708 0.83346 1.90700 1.58879 1.62381 1.33353 1.22255 0.93659 0.94069 0.88653 0.86699 1.22205 0.93692 0.99497 1.03333 1.21611 0.98155 0.97482 0.97995 1.22232 0.97927 1.01478 0.97938 1.22929 0.87103 0.88733 1.03699 1.88025 1.58119 1.51811 1.33280 0.93899 0.79593 0.94692 0.97116 0.94591 0.90884 0.87542 0.91793 0.88819 0.88082 0.91110 0.91397 0.93742 0.91800 0.91061 0.91014 0.90650 0.91297 0.90182 0.88684 0.93264 0.89903 0.88987 0.92724 0.87971 0.87840 0.90780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.31 13.06 21.65 0.28 -61.02 16 2 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 3 Si 0.98 47.42 29.55 68.60 2.03 49.45 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 6 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 7 C -0.25 -14.55 9.99 84.03 0.84 -13.71 16 8 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 9 N -0.75 -40.56 5.60 -343.43 -1.92 -42.48 16 10 C 0.16 6.62 6.26 86.38 0.54 7.16 16 11 C -0.12 -4.17 5.65 30.60 0.17 -4.00 16 12 C 0.13 3.61 5.45 86.38 0.47 4.08 16 13 N -0.60 -14.54 2.32 -821.81 -1.91 -16.45 16 14 C 0.10 1.55 4.39 86.38 0.38 1.93 16 15 C -0.11 -1.45 3.13 -10.07 -0.03 -1.48 16 16 C -0.13 -1.87 5.72 31.67 0.18 -1.69 16 17 C -0.12 -1.35 6.91 31.88 0.22 -1.13 16 18 C -0.12 -1.01 6.83 31.67 0.22 -0.80 16 19 C -0.12 -1.10 6.46 31.32 0.20 -0.90 16 20 C 0.51 15.34 6.44 87.66 0.56 15.91 16 21 O -0.57 -23.78 16.14 15.42 0.25 -23.53 16 22 C 0.07 1.62 2.01 29.88 0.06 1.68 16 23 H 0.12 1.80 3.83 -2.38 -0.01 1.79 16 24 C -0.15 -2.79 5.13 30.68 0.16 -2.64 16 25 C -0.12 -1.38 6.03 30.71 0.19 -1.19 16 26 C -0.16 -2.04 6.14 30.69 0.19 -1.85 16 27 C 0.05 0.79 6.84 72.01 0.49 1.28 16 28 O -0.39 -10.17 10.00 -130.52 -1.30 -11.47 16 29 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 30 H 0.37 21.40 7.67 -92.71 -0.71 20.68 16 31 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 33 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.11 2.39 7.73 -2.39 -0.02 2.37 16 36 H 0.06 2.11 7.35 -2.39 -0.02 2.09 16 37 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 38 H 0.10 1.18 4.63 -2.39 -0.01 1.16 16 39 H 0.07 1.11 7.80 -2.39 -0.02 1.09 16 40 H 0.07 0.97 4.40 -2.39 -0.01 0.96 16 41 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 44 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 45 H 0.07 0.49 8.14 -2.39 -0.02 0.48 16 46 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 47 H 0.08 0.60 7.67 -2.39 -0.02 0.58 16 48 H 0.09 1.47 6.72 -2.38 -0.02 1.45 16 49 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 50 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 51 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16 52 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 53 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16 54 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 55 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -79.51 417.36 2.88 -76.63 By element: Atomic # 1 Polarization: 30.22 SS G_CDS: 0.15 Total: 30.36 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: 5.31 Total: -1.49 kcal Atomic # 7 Polarization: -116.40 SS G_CDS: -3.55 Total: -119.95 kcal Atomic # 8 Polarization: -33.95 SS G_CDS: -1.06 Total: -35.01 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 2.03 Total: 49.45 kcal Total: -79.51 2.88 -76.63 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177281303.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.214 kcal (2) G-P(sol) polarization free energy of solvation -79.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds