Wall clock time and date at job start Tue Mar 31 2020 21:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46817 * 2 1 4 4 C 1.53006 * 109.46977 * 240.00269 * 2 1 3 5 5 C 1.52997 * 109.47127 * 299.99541 * 4 2 1 6 6 C 1.53000 * 109.47060 * 300.00449 * 5 4 2 7 7 C 1.52996 * 109.47328 * 60.00126 * 6 5 4 8 8 H 1.08992 * 109.47554 * 59.99639 * 7 6 5 9 9 C 1.50701 * 109.46990 * 180.02562 * 7 6 5 10 10 O 1.21289 * 119.99822 * 119.99794 * 9 7 6 11 11 N 1.34777 * 120.00115 * 299.99704 * 9 7 6 12 12 C 1.47510 * 118.75524 * 359.73572 * 11 9 7 13 13 C 1.53205 * 111.23796 * 221.50999 * 12 11 9 14 14 C 1.51533 * 109.42814 * 40.26120 * 13 12 11 15 15 O 1.42152 * 108.77129 * 268.50723 * 14 13 12 16 16 C 1.38013 * 119.43657 * 87.21587 * 15 14 13 17 17 H 1.08991 * 109.47007 * 56.58092 * 16 15 14 18 18 C 1.53004 * 109.46636 * 176.57436 * 16 15 14 19 19 N 1.46500 * 109.47182 * 300.00960 * 18 16 15 20 20 C 1.36929 * 120.00040 * 179.97438 * 19 18 16 21 21 H 1.08004 * 120.00250 * 0.02562 * 20 19 18 22 22 C 1.38811 * 120.00021 * 180.02562 * 20 19 18 23 23 N 1.31618 * 120.00066 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00166 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47189 * 90.00153 * 24 22 20 26 26 H 1.48505 * 109.46985 * 210.00474 * 24 22 20 27 27 H 1.48502 * 109.46966 * 329.99950 * 24 22 20 28 28 C 1.45115 * 118.75743 * 180.02562 * 11 9 7 29 29 C 1.52997 * 109.47415 * 120.00127 * 2 1 3 30 30 H 1.08992 * 109.47063 * 299.99823 * 1 2 3 31 31 H 1.08996 * 109.47407 * 60.00219 * 1 2 3 32 32 H 1.09004 * 109.46733 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47289 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.47261 * 300.00059 * 3 2 1 35 35 H 1.09002 * 109.47153 * 60.00231 * 3 2 1 36 36 H 1.08998 * 109.46505 * 179.97438 * 4 2 1 37 37 H 1.08996 * 109.46884 * 60.00293 * 4 2 1 38 38 H 1.09002 * 109.47153 * 180.02562 * 5 4 2 39 39 H 1.09001 * 109.46832 * 60.00321 * 5 4 2 40 40 H 1.09004 * 109.46724 * 180.02562 * 6 5 4 41 41 H 1.09001 * 109.47194 * 299.99650 * 6 5 4 42 42 H 1.08997 * 109.16583 * 342.02897 * 12 11 9 43 43 H 1.08997 * 109.16587 * 101.22816 * 12 11 9 44 44 H 1.08998 * 109.60720 * 280.22958 * 13 12 11 45 45 H 1.08995 * 109.42757 * 160.18797 * 13 12 11 46 46 H 1.09002 * 109.58642 * 148.72210 * 14 13 12 47 47 H 1.09007 * 109.58980 * 28.29723 * 14 13 12 48 48 H 1.08998 * 109.47185 * 60.01731 * 18 16 15 49 49 H 1.09004 * 109.46758 * 180.02562 * 18 16 15 50 50 H 0.97000 * 119.99821 * 0.02562 * 19 18 16 51 51 H 0.97001 * 120.00105 * 179.97438 * 23 22 20 52 52 H 1.09010 * 109.46041 * 210.72479 * 28 11 9 53 53 H 1.09001 * 109.46118 * 330.69727 * 28 11 9 54 54 H 1.09002 * 109.47045 * 300.00068 * 29 2 1 55 55 H 1.09001 * 109.47375 * 179.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5301 -2.1637 -1.2493 6 6 2.0401 -2.8849 -0.0001 7 6 1.5301 -2.1638 1.2491 8 1 0.4402 -2.1638 1.2492 9 6 2.0330 -2.8738 2.4796 10 8 2.7303 -2.2840 3.2777 11 7 1.7080 -4.1643 2.6931 12 6 0.8536 -4.8533 1.7077 13 6 -0.1925 -5.7333 2.3992 14 6 -0.7376 -5.0087 3.6133 15 8 0.0414 -5.3661 4.7474 16 6 1.1854 -4.6504 5.0372 17 1 0.9356 -3.5953 5.1473 18 6 1.7945 -5.1691 6.3415 19 7 0.8278 -5.0071 7.4303 20 6 1.1532 -5.4046 8.6996 21 1 2.1227 -5.8371 8.8981 22 6 0.2370 -5.2516 9.7311 23 7 -0.9446 -4.7249 9.4891 24 14 0.6812 -5.7932 11.4629 25 1 1.3124 -4.6619 12.1887 26 1 -0.5484 -6.2169 12.1796 27 1 1.6327 -6.9314 11.3968 28 6 2.2065 -4.8214 3.8870 29 6 2.0401 -0.7212 1.2492 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1299 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 3.1300 -0.7208 -1.2495 37 1 1.6767 -0.2073 -2.1392 38 1 1.8938 -2.6777 -2.1391 39 1 0.4401 -2.1637 -1.2493 40 1 1.6772 -3.9128 -0.0004 41 1 3.1301 -2.8849 -0.0001 42 1 0.3459 -4.1103 1.0927 43 1 1.4770 -5.4793 1.0693 44 1 0.2672 -6.6708 2.7122 45 1 -1.0066 -5.9421 1.7052 46 1 -1.7755 -5.2991 3.7768 47 1 -0.6781 -3.9320 3.4536 48 1 2.0445 -6.2243 6.2314 49 1 2.6977 -4.6036 6.5707 50 1 -0.0431 -4.6189 7.2519 51 1 -1.5850 -4.6183 10.2098 52 1 2.3506 -5.8827 3.6841 53 1 3.1576 -4.3748 4.1771 54 1 1.6768 -0.2074 2.1392 55 1 3.1301 -0.7216 1.2489 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202173874.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:36:02 Heat of formation + Delta-G solvation = -102.301060 kcal Electronic energy + Delta-G solvation = -31752.019153 eV Core-core repulsion = 27787.765360 eV Total energy + Delta-G solvation = -3964.253792 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.09373 -40.46410 -39.19373 -37.02039 -36.30049 -34.52939 -34.11273 -32.68651 -32.05880 -30.21891 -28.19635 -28.14542 -27.04433 -26.80051 -25.17153 -23.73559 -22.87188 -22.35154 -22.09609 -20.07006 -19.41938 -19.26659 -18.24718 -17.74783 -17.57091 -16.97402 -16.60421 -16.29738 -15.94368 -15.63395 -15.54023 -15.24612 -15.15315 -14.79914 -14.77233 -14.58938 -14.31637 -14.03709 -13.87245 -13.68885 -13.43711 -13.27204 -13.13461 -12.94508 -12.78519 -12.77685 -12.66312 -12.49260 -12.33175 -12.25230 -12.11773 -12.02597 -11.91526 -11.85579 -11.79669 -11.47107 -11.39349 -11.04356 -10.99693 -10.91322 -10.59080 -10.54334 -9.65674 -9.03384 -7.95530 -5.25660 1.45129 1.48730 1.54501 1.57181 1.91677 2.55018 2.70744 3.34962 3.37613 3.61176 3.63533 3.72008 3.83899 3.94538 3.98861 4.06088 4.07979 4.13957 4.22173 4.27431 4.31136 4.37441 4.41928 4.45470 4.49513 4.52169 4.58695 4.67022 4.70543 4.74360 4.81591 4.82763 4.85351 4.87595 4.99256 5.06492 5.07237 5.11454 5.12039 5.16198 5.17624 5.20104 5.21901 5.28540 5.38919 5.44374 5.45203 5.50403 5.52855 5.66921 6.24714 6.28050 6.73664 7.12017 7.31033 8.04888 8.30770 9.28447 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018272 B = 0.002568 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.044975 B =10899.948633 C =11499.370726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.062 4.062 3 C -0.142 4.142 4 C -0.108 4.108 5 C -0.114 4.114 6 C -0.117 4.117 7 C -0.097 4.097 8 H 0.114 0.886 9 C 0.501 3.499 10 O -0.586 6.586 11 N -0.606 5.606 12 C 0.097 3.903 13 C -0.158 4.158 14 C 0.063 3.937 15 O -0.396 6.396 16 C 0.107 3.893 17 H 0.016 0.984 18 C 0.163 3.837 19 N -0.740 5.740 20 C -0.249 4.249 21 H 0.077 0.923 22 C -0.078 4.078 23 N -0.971 5.971 24 Si 0.980 3.020 25 H -0.287 1.287 26 H -0.292 1.292 27 H -0.267 1.267 28 C 0.094 3.906 29 C -0.085 4.085 30 H 0.042 0.958 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.050 0.950 34 H 0.069 0.931 35 H 0.045 0.955 36 H 0.055 0.945 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.097 0.903 41 H 0.055 0.945 42 H 0.113 0.887 43 H 0.097 0.903 44 H 0.075 0.925 45 H 0.123 0.877 46 H 0.095 0.905 47 H 0.040 0.960 48 H 0.034 0.966 49 H 0.032 0.968 50 H 0.374 0.626 51 H 0.252 0.748 52 H 0.103 0.897 53 H 0.076 0.924 54 H 0.041 0.959 55 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.436 4.278 -31.961 32.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.062 4.062 3 C -0.200 4.200 4 C -0.146 4.146 5 C -0.151 4.151 6 C -0.155 4.155 7 C -0.118 4.118 8 H 0.131 0.869 9 C 0.291 3.709 10 O -0.466 6.466 11 N -0.338 5.338 12 C -0.024 4.024 13 C -0.196 4.196 14 C -0.013 4.013 15 O -0.315 6.315 16 C 0.046 3.954 17 H 0.034 0.966 18 C 0.036 3.964 19 N -0.382 5.382 20 C -0.380 4.380 21 H 0.095 0.905 22 C -0.270 4.270 23 N -0.621 5.621 24 Si 0.808 3.192 25 H -0.214 1.214 26 H -0.219 1.219 27 H -0.192 1.192 28 C -0.031 4.031 29 C -0.123 4.123 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.115 0.885 41 H 0.074 0.926 42 H 0.131 0.869 43 H 0.115 0.885 44 H 0.093 0.907 45 H 0.142 0.858 46 H 0.113 0.887 47 H 0.059 0.941 48 H 0.051 0.949 49 H 0.049 0.951 50 H 0.205 0.795 51 H 0.060 0.940 52 H 0.121 0.879 53 H 0.094 0.906 54 H 0.060 0.940 55 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.876 4.326 -31.343 31.771 hybrid contribution 0.038 0.440 1.610 1.669 sum 2.915 4.766 -29.734 30.254 Atomic orbital electron populations 1.21995 0.93840 1.02563 1.01864 1.20540 0.96274 0.95029 0.94327 1.21862 1.00786 0.95375 1.01928 1.21614 1.00315 0.95940 0.96687 1.21576 1.01897 0.94837 0.96824 1.21858 1.00975 1.00382 0.92261 1.21401 1.02585 0.95684 0.92146 0.86852 1.21634 0.79482 0.81720 0.88050 1.90699 1.40232 1.66419 1.49215 1.48043 1.50948 1.11660 1.23158 1.22510 0.92462 0.97374 0.90023 1.22416 1.00163 0.99387 0.97623 1.22424 0.95032 0.98398 0.85416 1.86359 1.37702 1.58895 1.48556 1.21841 0.86245 0.93230 0.94061 0.96634 1.20752 0.91887 0.98149 0.85645 1.42410 1.16077 1.75122 1.04621 1.19683 0.99378 1.32699 0.86266 0.90461 1.25668 0.96287 1.02661 1.02424 1.69856 1.07607 1.52041 1.32642 0.85045 0.76775 0.78024 0.79323 1.21363 1.21858 1.19163 1.22070 0.97156 0.99227 0.84638 1.21350 1.00037 0.93220 0.97692 0.93873 0.91303 0.91243 0.93131 0.91194 0.93598 0.92647 0.90499 0.89998 0.90058 0.88514 0.92647 0.86913 0.88486 0.90657 0.85844 0.88732 0.94148 0.94851 0.95065 0.79466 0.93967 0.87930 0.90551 0.94005 0.93171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 7.78 71.98 0.56 -1.18 16 2 C -0.06 -0.86 0.77 -52.18 -0.04 -0.90 16 3 C -0.14 -2.02 8.47 71.98 0.61 -1.41 16 4 C -0.11 -1.11 4.73 30.60 0.14 -0.96 16 5 C -0.11 -0.88 5.65 30.59 0.17 -0.70 16 6 C -0.12 -1.35 4.72 30.59 0.14 -1.20 16 7 C -0.10 -1.73 1.43 -11.54 -0.02 -1.75 16 8 H 0.11 1.67 5.69 -2.39 -0.01 1.65 16 9 C 0.50 13.57 7.04 87.66 0.62 14.18 16 10 O -0.59 -22.08 15.41 -3.06 -0.05 -22.12 16 11 N -0.61 -14.33 2.20 -818.77 -1.80 -16.13 16 12 C 0.10 1.32 4.43 86.25 0.38 1.70 16 13 C -0.16 -2.49 5.78 30.18 0.17 -2.32 16 14 C 0.06 1.62 6.37 71.50 0.46 2.08 16 15 O -0.40 -14.66 9.18 -117.84 -1.08 -15.74 16 16 C 0.11 4.08 2.73 31.19 0.09 4.17 16 17 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 18 C 0.16 7.40 5.95 86.38 0.51 7.92 16 19 N -0.74 -41.97 5.49 -343.45 -1.88 -43.85 16 20 C -0.25 -14.96 9.99 84.03 0.84 -14.12 16 21 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 22 C -0.08 -4.78 5.50 84.86 0.47 -4.31 16 23 N -0.97 -62.90 13.06 21.65 0.28 -62.61 16 24 Si 0.98 48.36 29.55 68.60 2.03 50.39 16 25 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 26 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 27 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 28 C 0.09 2.78 4.86 87.24 0.42 3.21 16 29 C -0.08 -1.74 3.30 30.59 0.10 -1.64 16 30 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.07 0.68 4.81 -2.39 -0.01 0.67 16 33 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 35 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.08 0.46 6.43 -2.39 -0.02 0.44 16 40 H 0.10 0.74 4.62 -2.39 -0.01 0.73 16 41 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.11 1.00 4.97 -2.39 -0.01 0.98 16 43 H 0.10 0.88 7.54 -2.39 -0.02 0.86 16 44 H 0.07 1.37 8.01 -2.39 -0.02 1.35 16 45 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 47 H 0.04 1.07 7.39 -2.38 -0.02 1.05 16 48 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 49 H 0.03 1.44 8.14 -2.38 -0.02 1.42 16 50 H 0.37 22.81 7.53 -92.71 -0.70 22.11 16 51 H 0.25 15.63 8.31 -92.71 -0.77 14.86 16 52 H 0.10 2.61 8.12 -2.38 -0.02 2.59 16 53 H 0.08 2.52 7.27 -2.39 -0.02 2.50 16 54 H 0.04 1.07 8.10 -2.39 -0.02 1.05 16 55 H 0.05 1.20 8.10 -2.39 -0.02 1.18 16 Total: -1.00 -79.89 404.43 3.29 -76.59 By element: Atomic # 1 Polarization: 30.56 SS G_CDS: 0.16 Total: 30.72 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: 5.63 Total: 2.76 kcal Atomic # 7 Polarization: -119.19 SS G_CDS: -3.40 Total: -122.60 kcal Atomic # 8 Polarization: -36.74 SS G_CDS: -1.13 Total: -37.87 kcal Atomic # 14 Polarization: 48.36 SS G_CDS: 2.03 Total: 50.39 kcal Total: -79.89 3.29 -76.59 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202173874.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.707 kcal (2) G-P(sol) polarization free energy of solvation -79.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds