Wall clock time and date at job start Tue Mar 31 2020 21:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52990 * 109.47439 * 2 1 4 4 C 1.53008 * 109.47041 * 239.99859 * 2 1 3 5 5 C 1.53003 * 109.46884 * 180.02562 * 4 2 1 6 6 C 1.52992 * 109.47288 * 60.00168 * 5 4 2 7 7 C 1.53008 * 109.47021 * 299.99748 * 6 5 4 8 8 H 1.08998 * 109.47028 * 300.00058 * 7 6 5 9 9 C 1.50706 * 109.46818 * 180.02562 * 7 6 5 10 10 O 1.21286 * 119.99458 * 271.85459 * 9 7 6 11 11 N 1.34766 * 120.00032 * 91.86135 * 9 7 6 12 12 C 1.47506 * 118.76239 * 354.81645 * 11 9 7 13 13 C 1.53572 * 111.03036 * 221.61273 * 12 11 9 14 14 C 1.51537 * 109.57937 * 39.97566 * 13 12 11 15 15 O 1.42159 * 108.74711 * 268.60012 * 14 13 12 16 16 C 1.38010 * 119.44315 * 87.23563 * 15 14 13 17 17 H 1.08996 * 109.47171 * 56.56365 * 16 15 14 18 18 C 1.53001 * 109.47225 * 176.56433 * 16 15 14 19 19 N 1.46498 * 109.47173 * 300.00131 * 18 16 15 20 20 C 1.36927 * 120.00532 * 179.97438 * 19 18 16 21 21 H 1.08001 * 119.99900 * 0.02562 * 20 19 18 22 22 C 1.38813 * 120.00579 * 179.97438 * 20 19 18 23 23 N 1.31620 * 119.99686 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00440 * 180.02562 * 22 20 19 25 25 H 1.48508 * 109.46793 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47190 * 119.99937 * 24 22 20 27 27 H 1.48504 * 109.46862 * 240.00527 * 24 22 20 28 28 C 1.45132 * 118.75593 * 174.79175 * 11 9 7 29 29 C 1.52998 * 109.47041 * 60.00303 * 7 6 5 30 30 H 1.09004 * 109.47160 * 300.00023 * 1 2 3 31 31 H 1.09000 * 109.47375 * 60.00256 * 1 2 3 32 32 H 1.08998 * 109.47410 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47673 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47149 * 300.00271 * 3 2 1 35 35 H 1.09004 * 109.46963 * 59.99856 * 3 2 1 36 36 H 1.09001 * 109.46857 * 299.99736 * 4 2 1 37 37 H 1.08991 * 109.46870 * 60.00269 * 4 2 1 38 38 H 1.08996 * 109.46714 * 179.97438 * 5 4 2 39 39 H 1.08998 * 109.47244 * 299.99814 * 5 4 2 40 40 H 1.09003 * 109.47072 * 180.02562 * 6 5 4 41 41 H 1.09001 * 109.47768 * 59.99758 * 6 5 4 42 42 H 1.09003 * 109.16435 * 342.00459 * 12 11 9 43 43 H 1.09001 * 109.16915 * 101.20558 * 12 11 9 44 44 H 1.09003 * 109.45039 * 160.00594 * 13 12 11 45 45 H 1.08997 * 109.44824 * 279.96230 * 13 12 11 46 46 H 1.08991 * 109.58718 * 148.82188 * 14 13 12 47 47 H 1.08996 * 109.59365 * 28.37703 * 14 13 12 48 48 H 1.09004 * 109.46690 * 59.99413 * 18 16 15 49 49 H 1.08997 * 109.47703 * 179.97438 * 18 16 15 50 50 H 0.97003 * 119.99829 * 359.97438 * 19 18 16 51 51 H 0.96996 * 119.99965 * 180.02562 * 23 22 20 52 52 H 1.08999 * 109.45858 * 330.71324 * 28 11 9 53 53 H 1.09000 * 109.45689 * 210.75660 * 28 11 9 54 54 H 1.08998 * 109.47410 * 59.99988 * 29 7 6 55 55 H 1.08996 * 109.46870 * 180.02562 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5700 -0.7219 -1.2489 6 6 4.0795 -1.4434 0.0002 7 6 3.5695 -0.7221 1.2495 8 1 3.9332 0.3054 1.2497 9 6 4.0719 -1.4326 2.4800 10 8 3.4328 -2.3472 2.9555 11 7 5.2311 -1.0515 3.0520 12 6 6.0436 -0.0152 2.3874 13 6 7.5369 -0.3704 2.4360 14 6 7.7135 -1.8563 2.1970 15 8 7.7029 -2.5252 3.4513 16 6 6.4997 -2.9226 3.9981 17 1 5.9756 -3.5678 3.2932 18 6 6.7580 -3.6895 5.2966 19 7 7.5783 -4.8694 5.0119 20 6 7.9398 -5.7134 6.0277 21 1 7.6198 -5.5094 7.0389 22 6 8.7167 -6.8317 5.7579 23 7 9.1063 -7.0805 4.5255 24 14 9.2092 -7.9834 7.1436 25 1 8.6475 -7.4849 8.4248 26 1 8.6810 -9.3436 6.8681 27 1 10.6902 -8.0374 7.2396 28 6 5.6327 -1.6759 4.2991 29 6 2.0395 -0.7216 1.2492 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9562 0.8900 36 1 1.6767 -1.7490 -1.2492 37 1 1.6767 -0.2075 -2.1392 38 1 3.9333 -1.2361 -2.1387 39 1 3.9337 0.3057 -1.2488 40 1 5.1695 -1.4434 0.0007 41 1 3.7158 -2.4710 0.0001 42 1 5.7303 0.0725 1.3470 43 1 5.8862 0.9395 2.8892 44 1 8.0678 0.1870 1.6642 45 1 7.9402 -0.1099 3.4145 46 1 8.6644 -2.0352 1.6953 47 1 6.8960 -2.2267 1.5784 48 1 7.2822 -3.0441 6.0015 49 1 5.8077 -4.0029 5.7288 50 1 7.8655 -5.0528 4.1037 51 1 9.6488 -7.8621 4.3369 52 1 4.7457 -1.9763 4.8569 53 1 6.2104 -0.9660 4.8910 54 1 1.6758 -1.7491 1.2491 55 1 1.6762 -0.2074 2.1390 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202173875.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:36:07 Heat of formation + Delta-G solvation = -107.820631 kcal Electronic energy + Delta-G solvation = -31747.465303 eV Core-core repulsion = 27782.972164 eV Total energy + Delta-G solvation = -3964.493139 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.03883 -40.47909 -39.19874 -36.95201 -36.25837 -34.52593 -34.12385 -32.67880 -32.14311 -30.21534 -28.15943 -27.99533 -27.27757 -26.73555 -25.15066 -23.75792 -22.79853 -22.43453 -22.20421 -19.90554 -19.41563 -19.27438 -18.32324 -17.78620 -17.56813 -16.88257 -16.61935 -16.20664 -16.01928 -15.59110 -15.53144 -15.25519 -15.14917 -14.90684 -14.78394 -14.68114 -14.19941 -14.10690 -13.89350 -13.73214 -13.39268 -13.28015 -13.12363 -12.94601 -12.81096 -12.80857 -12.67832 -12.45697 -12.36591 -12.26299 -12.12439 -12.02520 -11.94654 -11.87992 -11.80375 -11.47363 -11.44767 -11.05136 -11.01024 -10.96712 -10.58502 -10.55443 -9.65806 -9.03586 -7.95906 -5.25989 1.44998 1.47598 1.51787 1.57792 1.91319 2.54687 2.70535 3.34936 3.37386 3.60930 3.62005 3.71941 3.83301 3.94660 3.98805 4.06362 4.08048 4.12181 4.20411 4.26518 4.31478 4.36666 4.38195 4.44153 4.47212 4.51632 4.57348 4.66194 4.68465 4.72764 4.79683 4.83852 4.85366 4.88803 4.99511 5.05960 5.06592 5.08923 5.11358 5.11816 5.17124 5.20748 5.23073 5.25329 5.36819 5.45194 5.45365 5.48474 5.52953 5.67129 6.24528 6.27771 6.73544 7.11677 7.30722 8.04565 8.30410 9.28344 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.019275 B = 0.002531 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.284800 B =11061.230667 C =11449.363646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.060 4.060 3 C -0.144 4.144 4 C -0.111 4.111 5 C -0.111 4.111 6 C -0.109 4.109 7 C -0.095 4.095 8 H 0.124 0.876 9 C 0.502 3.498 10 O -0.585 6.585 11 N -0.609 5.609 12 C 0.098 3.902 13 C -0.156 4.156 14 C 0.063 3.937 15 O -0.396 6.396 16 C 0.107 3.893 17 H 0.015 0.985 18 C 0.163 3.837 19 N -0.740 5.740 20 C -0.247 4.247 21 H 0.078 0.922 22 C -0.079 4.079 23 N -0.971 5.971 24 Si 0.980 3.020 25 H -0.264 1.264 26 H -0.292 1.292 27 H -0.290 1.290 28 C 0.094 3.906 29 C -0.088 4.088 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.044 0.956 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.054 0.946 36 H 0.047 0.953 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.090 0.910 40 H 0.073 0.927 41 H 0.041 0.959 42 H 0.109 0.891 43 H 0.096 0.904 44 H 0.123 0.877 45 H 0.075 0.925 46 H 0.094 0.906 47 H 0.040 0.960 48 H 0.034 0.966 49 H 0.032 0.968 50 H 0.374 0.626 51 H 0.251 0.749 52 H 0.076 0.924 53 H 0.103 0.897 54 H 0.044 0.956 55 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.943 25.939 -14.810 32.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.060 4.060 3 C -0.200 4.200 4 C -0.148 4.148 5 C -0.148 4.148 6 C -0.147 4.147 7 C -0.116 4.116 8 H 0.142 0.858 9 C 0.292 3.708 10 O -0.464 6.464 11 N -0.340 5.340 12 C -0.023 4.023 13 C -0.194 4.194 14 C -0.012 4.012 15 O -0.315 6.315 16 C 0.047 3.953 17 H 0.033 0.967 18 C 0.036 3.964 19 N -0.382 5.382 20 C -0.379 4.379 21 H 0.096 0.904 22 C -0.271 4.271 23 N -0.622 5.622 24 Si 0.809 3.191 25 H -0.189 1.189 26 H -0.219 1.219 27 H -0.217 1.217 28 C -0.030 4.030 29 C -0.126 4.126 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.108 0.892 40 H 0.091 0.909 41 H 0.060 0.940 42 H 0.127 0.873 43 H 0.114 0.886 44 H 0.141 0.859 45 H 0.094 0.906 46 H 0.113 0.887 47 H 0.059 0.941 48 H 0.052 0.948 49 H 0.049 0.951 50 H 0.205 0.795 51 H 0.060 0.940 52 H 0.094 0.906 53 H 0.121 0.879 54 H 0.063 0.937 55 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.110 25.426 -14.270 31.968 hybrid contribution 0.137 -1.566 0.531 1.659 sum -12.973 23.860 -13.738 30.436 Atomic orbital electron populations 1.21859 0.94335 1.01426 1.02289 1.20518 0.95524 0.96234 0.93742 1.21980 1.01873 0.93864 1.02332 1.21634 0.95704 0.99961 0.97506 1.21551 0.95483 1.01727 0.96062 1.21521 1.00787 0.98798 0.93615 1.21454 0.97642 1.01291 0.91195 0.85780 1.21635 0.80279 0.82955 0.85929 1.90700 1.58792 1.31414 1.65532 1.48100 1.21679 1.40672 1.23584 1.22387 0.90373 0.90144 0.99391 1.22436 0.96032 0.95796 1.05088 1.22419 1.01961 0.92559 0.84302 1.86356 1.30918 1.76953 1.37289 1.21837 0.85274 0.93962 0.94270 0.96665 1.20753 0.93965 0.87709 0.94009 1.42418 1.61694 1.26246 1.07866 1.19720 1.25280 1.02755 0.90104 0.90431 1.25674 1.01527 1.00839 0.99083 1.69864 1.42600 1.29785 1.19951 0.84975 0.77318 0.78193 0.78660 1.18854 1.21949 1.21651 1.22086 0.99251 0.94851 0.86843 1.21417 0.92485 1.00329 0.98407 0.92716 0.91235 0.93720 0.91167 0.91456 0.92733 0.93453 0.90197 0.90915 0.89170 0.90886 0.94018 0.87286 0.88632 0.85903 0.90647 0.88748 0.94142 0.94830 0.95075 0.79488 0.93976 0.90607 0.87877 0.93729 0.92484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 8.47 71.98 0.61 -1.17 16 2 C -0.06 -0.76 0.77 -52.18 -0.04 -0.80 16 3 C -0.14 -1.22 7.78 71.98 0.56 -0.66 16 4 C -0.11 -1.33 4.73 30.60 0.14 -1.18 16 5 C -0.11 -1.20 5.65 30.59 0.17 -1.03 16 6 C -0.11 -1.83 4.98 30.59 0.15 -1.67 16 7 C -0.09 -1.68 1.38 -11.54 -0.02 -1.70 16 8 H 0.12 1.39 4.75 -2.39 -0.01 1.38 16 9 C 0.50 13.62 6.65 87.66 0.58 14.20 16 10 O -0.58 -22.16 15.70 -3.05 -0.05 -22.21 16 11 N -0.61 -14.54 2.19 -817.94 -1.79 -16.33 16 12 C 0.10 1.37 5.65 86.38 0.49 1.86 16 13 C -0.16 -2.50 5.79 30.31 0.18 -2.33 16 14 C 0.06 1.65 6.38 71.50 0.46 2.11 16 15 O -0.40 -14.77 9.18 -117.80 -1.08 -15.85 16 16 C 0.11 4.12 2.73 31.21 0.09 4.21 16 17 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 18 C 0.16 7.43 5.95 86.38 0.51 7.94 16 19 N -0.74 -42.08 5.49 -343.46 -1.88 -43.97 16 20 C -0.25 -14.88 9.99 84.04 0.84 -14.04 16 21 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 22 C -0.08 -4.85 5.50 84.86 0.47 -4.38 16 23 N -0.97 -63.09 13.06 21.65 0.28 -62.81 16 24 Si 0.98 48.47 29.55 68.60 2.03 50.50 16 25 H -0.26 -12.22 7.11 99.48 0.71 -11.52 16 26 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 27 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 28 C 0.09 2.81 4.82 87.25 0.42 3.23 16 29 C -0.09 -1.67 3.63 30.59 0.11 -1.56 16 30 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.07 0.45 4.81 -2.39 -0.01 0.44 16 34 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.09 0.61 6.43 -2.39 -0.02 0.59 16 40 H 0.07 1.11 7.36 -2.39 -0.02 1.10 16 41 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.11 1.00 4.99 -2.39 -0.01 0.99 16 43 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.07 1.39 8.01 -2.39 -0.02 1.37 16 46 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 47 H 0.04 1.09 7.40 -2.39 -0.02 1.07 16 48 H 0.03 1.49 8.14 -2.38 -0.02 1.47 16 49 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 50 H 0.37 22.88 7.53 -92.71 -0.70 22.19 16 51 H 0.25 15.63 8.31 -92.71 -0.77 14.86 16 52 H 0.08 2.49 7.35 -2.39 -0.02 2.47 16 53 H 0.10 2.63 8.11 -2.39 -0.02 2.61 16 54 H 0.04 1.12 7.85 -2.39 -0.02 1.10 16 55 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -80.17 408.35 3.39 -76.78 By element: Atomic # 1 Polarization: 30.70 SS G_CDS: 0.16 Total: 30.85 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: 5.72 Total: 3.03 kcal Atomic # 7 Polarization: -119.71 SS G_CDS: -3.39 Total: -123.11 kcal Atomic # 8 Polarization: -36.93 SS G_CDS: -1.13 Total: -38.06 kcal Atomic # 14 Polarization: 48.47 SS G_CDS: 2.03 Total: 50.50 kcal Total: -80.17 3.39 -76.78 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202173875.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.039 kcal (2) G-P(sol) polarization free energy of solvation -80.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds