Wall clock time and date at job start Tue Mar 31 2020 21:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47185 * 2 1 4 4 C 1.52996 * 109.47040 * 120.00325 * 2 1 3 5 5 C 1.53007 * 109.47348 * 59.99601 * 4 2 1 6 6 C 1.52995 * 109.46924 * 59.99926 * 5 4 2 7 7 C 1.52996 * 109.47168 * 300.00184 * 6 5 4 8 8 H 1.09000 * 109.47153 * 299.99830 * 7 6 5 9 9 C 1.50704 * 109.47319 * 180.02562 * 7 6 5 10 10 O 1.21280 * 120.00532 * 240.00430 * 9 7 6 11 11 N 1.34780 * 119.99542 * 59.99588 * 9 7 6 12 12 C 1.47504 * 118.76159 * 0.02562 * 11 9 7 13 13 C 1.53567 * 110.98787 * 138.31925 * 12 11 9 14 14 C 1.51529 * 109.58005 * 320.04405 * 13 12 11 15 15 O 1.42163 * 108.75268 * 91.40323 * 14 13 12 16 16 C 1.38014 * 119.44159 * 272.76903 * 15 14 13 17 17 H 1.08997 * 109.47186 * 303.42885 * 16 15 14 18 18 C 1.52997 * 109.46808 * 183.42833 * 16 15 14 19 19 N 1.46503 * 109.46872 * 65.00742 * 18 16 15 20 20 C 1.36942 * 119.99535 * 180.02562 * 19 18 16 21 21 H 1.07997 * 120.00451 * 359.97438 * 20 19 18 22 22 C 1.38814 * 119.99492 * 179.97438 * 20 19 18 23 23 N 1.31624 * 120.00153 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99780 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.47189 * 90.00176 * 24 22 20 26 26 H 1.48509 * 109.46767 * 209.99981 * 24 22 20 27 27 H 1.48499 * 109.46986 * 329.99579 * 24 22 20 28 28 C 1.45095 * 118.73348 * 180.02562 * 11 9 7 29 29 C 1.52993 * 109.47452 * 60.00212 * 7 6 5 30 30 H 1.09007 * 109.46995 * 300.00203 * 1 2 3 31 31 H 1.09000 * 109.46923 * 59.99311 * 1 2 3 32 32 H 1.08997 * 109.47463 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46642 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47481 * 299.99704 * 3 2 1 35 35 H 1.08998 * 109.47218 * 60.00164 * 3 2 1 36 36 H 1.08998 * 109.46983 * 299.99604 * 4 2 1 37 37 H 1.09000 * 109.47153 * 179.97438 * 4 2 1 38 38 H 1.09004 * 109.46833 * 299.99911 * 5 4 2 39 39 H 1.08998 * 109.46989 * 180.02562 * 5 4 2 40 40 H 1.08997 * 109.46943 * 180.02562 * 6 5 4 41 41 H 1.09000 * 109.46944 * 60.00141 * 6 5 4 42 42 H 1.09002 * 109.16604 * 17.94547 * 12 11 9 43 43 H 1.08997 * 109.16748 * 258.69384 * 12 11 9 44 44 H 1.08999 * 109.45613 * 80.08551 * 13 12 11 45 45 H 1.09004 * 109.45310 * 200.01281 * 13 12 11 46 46 H 1.09000 * 109.59492 * 211.18284 * 14 13 12 47 47 H 1.09005 * 109.59031 * 331.48173 * 14 13 12 48 48 H 1.09002 * 109.46848 * 185.00186 * 18 16 15 49 49 H 1.09001 * 109.47274 * 305.00351 * 18 16 15 50 50 H 0.97002 * 120.00012 * 359.97438 * 19 18 16 51 51 H 0.97003 * 119.99653 * 179.97438 * 23 22 20 52 52 H 1.08999 * 109.47695 * 149.32275 * 28 11 9 53 53 H 1.09000 * 109.47709 * 29.32281 * 28 11 9 54 54 H 1.09000 * 109.47254 * 59.99679 * 29 7 6 55 55 H 1.09000 * 109.47807 * 180.02562 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5299 -2.1638 1.2492 6 6 2.0398 -2.8850 -0.0001 7 6 1.5299 -2.1637 -1.2492 8 1 0.4399 -2.1637 -1.2492 9 6 2.0316 -2.8745 -2.4798 10 8 2.7290 -2.2855 -3.2784 11 7 1.7054 -4.1647 -2.6927 12 6 0.8555 -4.8545 -1.7040 13 6 -0.1967 -5.7308 -2.3992 14 6 -0.7404 -5.0049 -3.6131 15 8 0.0386 -5.3635 -4.7470 16 6 1.1838 -4.6497 -5.0366 17 1 0.9358 -3.5940 -5.1466 18 6 1.7925 -5.1693 -6.3405 19 7 0.8752 -4.8972 -7.4500 20 6 1.2093 -5.2756 -8.7230 21 1 2.1490 -5.7742 -8.9092 22 6 0.3400 -5.0182 -9.7742 23 7 -0.8055 -4.4109 -9.5473 24 14 0.7959 -5.5336 -11.5108 25 1 0.3002 -6.9102 -11.7648 26 1 0.1773 -4.5974 -12.4835 27 1 2.2726 -5.5029 -11.6647 28 6 2.2039 -4.8224 -3.8862 29 6 2.0399 -0.7213 -1.2493 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1301 1.4424 -0.0005 34 1 1.6768 1.9564 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6767 -0.2075 2.1391 37 1 3.1300 -0.7217 1.2490 38 1 0.4399 -2.1637 1.2492 39 1 1.8929 -2.6775 2.1394 40 1 1.6761 -3.9125 -0.0003 41 1 3.1298 -2.8851 0.0000 42 1 0.3509 -4.1118 -1.0859 43 1 1.4815 -5.4821 -1.0698 44 1 0.2615 -6.6689 -2.7122 45 1 -1.0115 -5.9388 -1.7057 46 1 -1.7786 -5.2934 -3.7770 47 1 -0.6812 -3.9284 -3.4521 48 1 2.7427 -4.6675 -6.5232 49 1 1.9583 -6.2437 -6.2613 50 1 0.0310 -4.4496 -7.2828 51 1 -1.4128 -4.2307 -10.2819 52 1 2.3464 -5.8839 -3.6836 53 1 3.1556 -4.3770 -4.1759 54 1 3.1299 -0.7214 -1.2493 55 1 1.6762 -0.2073 -2.1390 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202173877.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:36:16 Heat of formation + Delta-G solvation = -102.413434 kcal Electronic energy + Delta-G solvation = -31754.585448 eV Core-core repulsion = 27790.326783 eV Total energy + Delta-G solvation = -3964.258665 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.09374 -40.46248 -39.19447 -37.01436 -36.31424 -34.52849 -34.10866 -32.68491 -32.05833 -30.20904 -28.19749 -28.15185 -27.04482 -26.80622 -25.17141 -23.73339 -22.87502 -22.36749 -22.09519 -20.07659 -19.41999 -19.27299 -18.24380 -17.74630 -17.57299 -16.96755 -16.61213 -16.29480 -15.94120 -15.63585 -15.53964 -15.24910 -15.15776 -14.79614 -14.77670 -14.58269 -14.31603 -14.04098 -13.87611 -13.68826 -13.44340 -13.28275 -13.13311 -12.94567 -12.78901 -12.76953 -12.66703 -12.49463 -12.33418 -12.25102 -12.11466 -12.02784 -11.91359 -11.85702 -11.80244 -11.47525 -11.39636 -11.04443 -10.99853 -10.91409 -10.58915 -10.55245 -9.65723 -9.04117 -7.96058 -5.26346 1.44965 1.48637 1.54622 1.57074 1.91734 2.54776 2.70514 3.34910 3.37292 3.60865 3.63410 3.71869 3.83032 3.94534 3.98980 4.06332 4.08019 4.13731 4.21880 4.27193 4.30944 4.36752 4.41835 4.45405 4.49626 4.52809 4.58670 4.66904 4.70334 4.74234 4.81470 4.82828 4.85585 4.87576 4.99158 5.06291 5.07026 5.11368 5.11904 5.16090 5.17566 5.19974 5.21831 5.28458 5.38831 5.44265 5.44981 5.50340 5.52929 5.66857 6.24247 6.27977 6.73056 7.12163 7.30294 8.03775 8.29488 9.27948 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.017648 B = 0.002597 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.222138 B =10780.503342 C =11444.054402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.062 4.062 3 C -0.142 4.142 4 C -0.108 4.108 5 C -0.114 4.114 6 C -0.117 4.117 7 C -0.097 4.097 8 H 0.114 0.886 9 C 0.501 3.499 10 O -0.586 6.586 11 N -0.607 5.607 12 C 0.096 3.904 13 C -0.158 4.158 14 C 0.063 3.937 15 O -0.397 6.397 16 C 0.107 3.893 17 H 0.015 0.985 18 C 0.163 3.837 19 N -0.741 5.741 20 C -0.249 4.249 21 H 0.078 0.922 22 C -0.079 4.079 23 N -0.971 5.971 24 Si 0.981 3.019 25 H -0.283 1.283 26 H -0.294 1.294 27 H -0.268 1.268 28 C 0.094 3.906 29 C -0.085 4.085 30 H 0.068 0.932 31 H 0.042 0.958 32 H 0.069 0.931 33 H 0.050 0.950 34 H 0.045 0.955 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.055 0.945 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.097 0.903 41 H 0.055 0.945 42 H 0.113 0.887 43 H 0.098 0.902 44 H 0.075 0.925 45 H 0.123 0.877 46 H 0.095 0.905 47 H 0.040 0.960 48 H 0.033 0.967 49 H 0.034 0.966 50 H 0.373 0.627 51 H 0.252 0.748 52 H 0.104 0.896 53 H 0.075 0.925 54 H 0.049 0.951 55 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.074 3.372 32.140 32.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.062 4.062 3 C -0.200 4.200 4 C -0.146 4.146 5 C -0.151 4.151 6 C -0.155 4.155 7 C -0.118 4.118 8 H 0.131 0.869 9 C 0.291 3.709 10 O -0.466 6.466 11 N -0.338 5.338 12 C -0.024 4.024 13 C -0.196 4.196 14 C -0.013 4.013 15 O -0.316 6.316 16 C 0.046 3.954 17 H 0.033 0.967 18 C 0.036 3.964 19 N -0.383 5.383 20 C -0.380 4.380 21 H 0.096 0.904 22 C -0.271 4.271 23 N -0.622 5.622 24 Si 0.809 3.191 25 H -0.210 1.210 26 H -0.220 1.220 27 H -0.193 1.193 28 C -0.031 4.031 29 C -0.123 4.123 30 H 0.087 0.913 31 H 0.061 0.939 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.074 0.926 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.115 0.885 41 H 0.074 0.926 42 H 0.131 0.869 43 H 0.116 0.884 44 H 0.094 0.906 45 H 0.141 0.859 46 H 0.113 0.887 47 H 0.058 0.942 48 H 0.050 0.950 49 H 0.052 0.948 50 H 0.204 0.796 51 H 0.060 0.940 52 H 0.122 0.878 53 H 0.094 0.906 54 H 0.068 0.932 55 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 2.517 3.430 31.518 31.804 hybrid contribution 0.046 0.481 -1.620 1.690 sum 2.563 3.911 29.899 30.262 Atomic orbital electron populations 1.21997 0.93838 1.02565 1.01860 1.20540 0.96277 0.95025 0.94325 1.21862 1.00785 0.95383 1.01926 1.21615 1.00312 0.95948 0.96676 1.21577 1.01904 0.94832 0.96824 1.21862 1.00978 1.00395 0.92246 1.21400 1.02585 0.95669 0.92155 0.86863 1.21641 0.79468 0.81764 0.88056 1.90700 1.40207 1.66485 1.49189 1.48039 1.51107 1.11616 1.23075 1.22600 0.92476 0.97373 0.89948 1.22474 1.00116 0.99399 0.97578 1.22414 0.95038 0.98401 0.85415 1.86355 1.37642 1.58948 1.48625 1.21830 0.86210 0.93256 0.94069 0.96684 1.20747 0.92355 0.97983 0.85333 1.42441 1.21141 1.71354 1.03388 1.19686 1.02272 1.30602 0.85467 0.90412 1.25678 0.96842 1.02150 1.02400 1.69860 1.11482 1.48892 1.31952 0.85037 0.77809 0.77211 0.79064 1.20997 1.22016 1.19326 1.22057 0.97121 0.99257 0.84645 1.21350 1.00033 0.93242 0.97695 0.91279 0.93906 0.91231 0.93135 0.93627 0.91167 0.90479 0.92649 0.90057 0.89972 0.88472 0.92642 0.86908 0.88423 0.90617 0.85857 0.88670 0.94204 0.94953 0.94795 0.79582 0.93964 0.87829 0.90632 0.93180 0.94052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 7.78 71.98 0.56 -1.20 16 2 C -0.06 -0.87 0.77 -52.18 -0.04 -0.91 16 3 C -0.14 -2.05 8.47 71.98 0.61 -1.44 16 4 C -0.11 -1.12 4.73 30.60 0.14 -0.97 16 5 C -0.11 -0.88 5.65 30.59 0.17 -0.71 16 6 C -0.12 -1.35 4.72 30.59 0.14 -1.21 16 7 C -0.10 -1.75 1.43 -11.54 -0.02 -1.76 16 8 H 0.11 1.68 5.70 -2.39 -0.01 1.67 16 9 C 0.50 13.66 7.04 87.66 0.62 14.28 16 10 O -0.59 -22.30 15.41 -3.03 -0.05 -22.34 16 11 N -0.61 -14.37 2.19 -818.21 -1.79 -16.16 16 12 C 0.10 1.31 4.47 86.38 0.39 1.69 16 13 C -0.16 -2.45 5.78 30.30 0.18 -2.27 16 14 C 0.06 1.61 6.37 71.50 0.46 2.07 16 15 O -0.40 -14.58 9.38 -117.85 -1.11 -15.69 16 16 C 0.11 4.09 2.68 31.18 0.08 4.18 16 17 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 18 C 0.16 7.41 5.92 86.38 0.51 7.92 16 19 N -0.74 -42.11 5.54 -343.44 -1.90 -44.01 16 20 C -0.25 -14.98 9.99 84.03 0.84 -14.14 16 21 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 22 C -0.08 -4.81 5.50 84.86 0.47 -4.34 16 23 N -0.97 -63.04 13.06 21.65 0.28 -62.75 16 24 Si 0.98 48.41 29.55 68.60 2.03 50.44 16 25 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 26 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 27 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 28 C 0.09 2.79 4.86 87.23 0.42 3.21 16 29 C -0.09 -1.76 3.30 30.59 0.10 -1.66 16 30 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 31 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.07 0.69 4.81 -2.39 -0.01 0.68 16 33 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 34 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.08 0.46 6.43 -2.38 -0.02 0.44 16 39 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 40 H 0.10 0.74 4.61 -2.39 -0.01 0.73 16 41 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.11 0.99 4.96 -2.39 -0.01 0.98 16 43 H 0.10 0.87 7.56 -2.39 -0.02 0.85 16 44 H 0.08 1.35 8.01 -2.39 -0.02 1.33 16 45 H 0.12 1.04 8.14 -2.38 -0.02 1.02 16 46 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 47 H 0.04 1.05 7.41 -2.38 -0.02 1.03 16 48 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 49 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 50 H 0.37 22.80 7.65 -92.71 -0.71 22.10 16 51 H 0.25 15.67 8.31 -92.71 -0.77 14.90 16 52 H 0.10 2.61 8.11 -2.39 -0.02 2.59 16 53 H 0.08 2.51 7.27 -2.39 -0.02 2.49 16 54 H 0.05 1.21 8.10 -2.39 -0.02 1.19 16 55 H 0.04 1.07 8.10 -2.39 -0.02 1.05 16 Total: -1.00 -80.22 404.75 3.25 -76.96 By element: Atomic # 1 Polarization: 30.67 SS G_CDS: 0.15 Total: 30.82 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: 5.63 Total: 2.74 kcal Atomic # 7 Polarization: -119.52 SS G_CDS: -3.41 Total: -122.93 kcal Atomic # 8 Polarization: -36.88 SS G_CDS: -1.15 Total: -38.04 kcal Atomic # 14 Polarization: 48.41 SS G_CDS: 2.03 Total: 50.44 kcal Total: -80.22 3.25 -76.96 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202173877.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.450 kcal (2) G-P(sol) polarization free energy of solvation -80.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds