Wall clock time and date at job start Tue Mar 31 2020 21:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46927 * 2 1 4 4 C 1.52995 * 109.47479 * 120.00098 * 2 1 3 5 5 C 1.52995 * 109.47156 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.47360 * 300.00290 * 5 4 2 7 7 C 1.50702 * 109.47406 * 180.02562 * 6 5 4 8 8 O 1.21286 * 119.99514 * 335.67885 * 7 6 5 9 9 N 1.34770 * 120.00191 * 155.68146 * 7 6 5 10 10 C 1.47506 * 118.75662 * 355.15742 * 9 7 6 11 11 C 1.53571 * 111.02543 * 138.37785 * 10 9 7 12 12 C 1.51530 * 109.58145 * 320.02366 * 11 10 9 13 13 O 1.42157 * 108.76717 * 91.40223 * 12 11 10 14 14 C 1.38016 * 119.43210 * 272.77639 * 13 12 11 15 15 H 1.08995 * 109.47067 * 303.42253 * 14 13 12 16 16 C 1.52997 * 109.46910 * 183.42464 * 14 13 12 17 17 N 1.46503 * 109.47102 * 64.99504 * 16 14 13 18 18 C 1.36936 * 120.00135 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00162 * 0.02562 * 18 17 16 20 20 C 1.38810 * 119.99907 * 179.97438 * 18 17 16 21 21 N 1.31625 * 120.00071 * 359.73757 * 20 18 17 22 22 Si 1.86795 * 120.00098 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47231 * 90.00098 * 22 20 18 24 24 H 1.48504 * 109.47630 * 210.00721 * 22 20 18 25 25 H 1.48508 * 109.47240 * 330.00593 * 22 20 18 26 26 C 1.45125 * 118.75897 * 175.16729 * 9 7 6 27 27 C 1.52995 * 109.47223 * 59.99751 * 6 5 4 28 28 C 1.53000 * 109.46590 * 240.00440 * 2 1 3 29 29 H 1.09005 * 109.46603 * 299.99828 * 1 2 3 30 30 H 1.08997 * 109.47658 * 59.99644 * 1 2 3 31 31 H 1.08999 * 109.47179 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46887 * 180.02562 * 3 2 1 33 33 H 1.09008 * 109.47356 * 300.00139 * 3 2 1 34 34 H 1.08995 * 109.47326 * 60.00514 * 3 2 1 35 35 H 1.09002 * 109.46906 * 60.00031 * 4 2 1 36 36 H 1.08997 * 109.47168 * 300.00518 * 4 2 1 37 37 H 1.08997 * 109.47334 * 180.02562 * 5 4 2 38 38 H 1.08999 * 109.47085 * 59.99864 * 5 4 2 39 39 H 1.09002 * 109.47155 * 299.99934 * 6 5 4 40 40 H 1.08992 * 109.17181 * 17.97688 * 10 9 7 41 41 H 1.09011 * 109.16563 * 258.77327 * 10 9 7 42 42 H 1.08997 * 109.45313 * 199.98609 * 11 10 9 43 43 H 1.09007 * 109.45456 * 80.05944 * 11 10 9 44 44 H 1.09000 * 109.59131 * 331.60990 * 12 11 10 45 45 H 1.09007 * 109.70717 * 211.25389 * 12 11 10 46 46 H 1.09000 * 109.47555 * 305.00001 * 16 14 13 47 47 H 1.08995 * 109.47360 * 184.99613 * 16 14 13 48 48 H 0.97002 * 119.99775 * 0.02562 * 17 16 14 49 49 H 0.96998 * 119.99946 * 180.02562 * 21 20 18 50 50 H 1.08996 * 109.46467 * 149.26550 * 26 9 7 51 51 H 1.09000 * 109.46033 * 29.29900 * 26 9 7 52 52 H 1.08999 * 109.47235 * 60.00418 * 27 6 5 53 53 H 1.09005 * 109.47264 * 180.02562 * 27 6 5 54 54 H 1.09002 * 109.47242 * 299.99630 * 28 2 1 55 55 H 1.09001 * 109.47648 * 59.99563 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5700 -0.7217 1.2488 6 6 4.0795 -1.4433 -0.0005 7 6 5.5866 -1.4443 -0.0006 8 8 6.1935 -0.5915 0.6120 9 7 6.2597 -2.3928 -0.6815 10 6 5.4979 -3.4784 -1.3271 11 6 6.0583 -3.7905 -2.7224 12 6 6.4327 -2.4985 -3.4200 13 8 7.7957 -2.2063 -3.1408 14 6 8.1174 -1.4941 -2.0032 15 1 7.5864 -0.5423 -2.0082 16 6 9.6252 -1.2368 -1.9720 17 7 9.9955 -0.3673 -3.0915 18 6 11.3021 0.0023 -3.2684 19 1 12.0598 -0.3476 -2.5829 20 6 11.6529 0.8257 -4.3293 21 7 10.7305 1.2471 -5.1684 22 14 13.4354 1.3292 -4.5711 23 1 14.1167 0.3364 -5.4402 24 1 13.4892 2.6677 -5.2121 25 1 14.1175 1.3838 -3.2531 26 6 7.7068 -2.3075 -0.7516 27 6 3.5695 -0.7220 -1.2497 28 6 2.0399 -0.7212 -1.2493 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6768 -1.7489 1.2491 36 1 1.6767 -0.2075 2.1391 37 1 3.9335 -1.2360 2.1384 38 1 3.9337 0.3058 1.2485 39 1 3.7159 -2.4708 -0.0004 40 1 4.4545 -3.1774 -1.4197 41 1 5.5576 -4.3742 -0.7088 42 1 5.3027 -4.3137 -3.3084 43 1 6.9427 -4.4205 -2.6259 44 1 5.8026 -1.6887 -3.0523 45 1 6.2956 -2.6084 -4.4958 46 1 10.1574 -2.1843 -2.0566 47 1 9.8919 -0.7529 -1.0325 48 1 9.3149 -0.0527 -3.7069 49 1 10.9757 1.8222 -5.9100 50 1 8.1270 -3.3111 -0.8168 51 1 8.0852 -1.8130 0.1430 52 1 3.9331 0.3055 -1.2500 53 1 3.9321 -1.2363 -2.1398 54 1 1.6766 -1.7489 -1.2494 55 1 1.6765 -0.2074 -2.1393 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202174506.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:17 Heat of formation + Delta-G solvation = -107.164189 kcal Electronic energy + Delta-G solvation = -31797.270391 eV Core-core repulsion = 27832.805718 eV Total energy + Delta-G solvation = -3964.464674 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.02579 -40.44727 -39.25977 -36.95223 -36.26402 -34.59543 -34.07436 -32.67600 -31.79207 -30.41331 -28.43156 -28.18960 -27.35502 -26.51074 -24.64163 -23.70008 -23.11228 -22.34747 -22.24856 -20.00284 -19.31705 -19.24899 -18.43730 -17.77812 -17.55651 -16.83936 -16.61410 -16.25570 -16.08011 -15.72639 -15.64964 -15.17578 -14.94149 -14.85730 -14.80031 -14.61999 -14.14680 -14.07336 -13.84190 -13.63330 -13.37722 -13.27506 -13.19657 -13.11031 -12.83499 -12.78044 -12.64778 -12.54549 -12.34149 -12.30411 -12.14552 -12.02238 -11.90694 -11.86705 -11.76288 -11.48673 -11.39371 -11.09552 -10.99954 -10.87847 -10.62190 -10.53897 -9.64900 -9.04068 -7.96036 -5.26259 1.44969 1.48521 1.52168 1.56939 1.93136 2.54718 2.70669 3.36997 3.37736 3.60722 3.64500 3.71624 3.83491 3.93547 3.99349 4.04900 4.06271 4.14292 4.15522 4.24040 4.35165 4.38199 4.40512 4.44138 4.51660 4.54786 4.57983 4.66614 4.68803 4.73070 4.83550 4.85469 4.85928 4.90379 4.95990 5.05435 5.06403 5.08965 5.10888 5.12262 5.13656 5.21213 5.22876 5.26997 5.33565 5.45046 5.50770 5.51519 5.55395 5.64527 6.24276 6.28364 6.73249 7.12279 7.30392 8.03767 8.29547 9.27916 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015649 B = 0.002684 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.766994 B =10428.739384 C =10986.382753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.066 4.066 3 C -0.149 4.149 4 C -0.099 4.099 5 C -0.103 4.103 6 C -0.095 4.095 7 C 0.503 3.497 8 O -0.585 6.585 9 N -0.608 5.608 10 C 0.097 3.903 11 C -0.156 4.156 12 C 0.062 3.938 13 O -0.397 6.397 14 C 0.108 3.892 15 H 0.016 0.984 16 C 0.162 3.838 17 N -0.740 5.740 18 C -0.249 4.249 19 H 0.078 0.922 20 C -0.078 4.078 21 N -0.971 5.971 22 Si 0.980 3.020 23 H -0.284 1.284 24 H -0.293 1.293 25 H -0.269 1.269 26 C 0.093 3.907 27 C -0.111 4.111 28 C -0.098 4.098 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.041 0.959 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.083 0.917 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.049 0.951 39 H 0.125 0.875 40 H 0.112 0.888 41 H 0.093 0.907 42 H 0.122 0.878 43 H 0.074 0.926 44 H 0.043 0.957 45 H 0.095 0.905 46 H 0.034 0.966 47 H 0.033 0.967 48 H 0.373 0.627 49 H 0.252 0.748 50 H 0.102 0.898 51 H 0.076 0.924 52 H 0.044 0.956 53 H 0.072 0.928 54 H 0.088 0.912 55 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.234 -12.941 11.072 31.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.066 4.066 3 C -0.206 4.206 4 C -0.136 4.136 5 C -0.141 4.141 6 C -0.116 4.116 7 C 0.292 3.708 8 O -0.464 6.464 9 N -0.340 5.340 10 C -0.024 4.024 11 C -0.194 4.194 12 C -0.013 4.013 13 O -0.316 6.316 14 C 0.048 3.952 15 H 0.034 0.966 16 C 0.035 3.965 17 N -0.383 5.383 18 C -0.380 4.380 19 H 0.096 0.904 20 C -0.270 4.270 21 N -0.621 5.621 22 Si 0.808 3.192 23 H -0.210 1.210 24 H -0.220 1.220 25 H -0.193 1.193 26 C -0.032 4.032 27 C -0.148 4.148 28 C -0.136 4.136 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.102 0.898 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.143 0.857 40 H 0.130 0.870 41 H 0.111 0.889 42 H 0.141 0.859 43 H 0.093 0.907 44 H 0.062 0.938 45 H 0.113 0.887 46 H 0.052 0.948 47 H 0.051 0.949 48 H 0.204 0.796 49 H 0.060 0.940 50 H 0.120 0.880 51 H 0.094 0.906 52 H 0.063 0.937 53 H 0.090 0.910 54 H 0.107 0.893 55 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -25.603 -12.600 11.335 30.705 hybrid contribution 1.101 1.144 -0.364 1.629 sum -24.503 -11.456 10.972 29.189 Atomic orbital electron populations 1.21818 0.93217 1.02505 1.01857 1.20571 0.96111 0.94648 0.95293 1.22004 1.00482 0.96524 1.01607 1.21569 0.92908 1.01626 0.97530 1.21399 0.96862 1.00202 0.95622 1.21417 0.88279 1.03584 0.98271 1.21623 0.91830 0.79999 0.77307 1.90690 1.71574 1.39080 1.45094 1.48073 1.06172 1.27237 1.52537 1.22408 0.96451 0.89726 0.93768 1.22429 1.03447 0.97736 0.95751 1.22448 0.81336 0.96774 1.00772 1.86356 1.27740 1.74174 1.43301 1.21836 0.95055 0.92355 0.85983 0.96630 1.20747 0.91466 0.93582 0.90665 1.42430 1.06414 1.58084 1.31350 1.19681 0.86286 1.23354 1.08698 0.90440 1.25668 1.02191 1.01238 0.97939 1.69856 1.33913 1.40284 1.18087 0.85044 0.79287 0.76874 0.77960 1.21038 1.21998 1.19340 1.22082 0.81291 1.01918 0.97937 1.21548 0.97825 0.99851 0.95614 1.21563 0.92462 1.02005 0.97540 0.92652 0.92615 0.91381 0.94005 0.92766 0.92667 0.89836 0.91437 0.92301 0.93246 0.85717 0.87029 0.88875 0.85936 0.90749 0.93840 0.88702 0.94847 0.94944 0.79560 0.93964 0.87989 0.90556 0.93724 0.90975 0.89303 0.91235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 8.47 71.98 0.61 -0.67 16 2 C -0.07 -0.82 0.77 -52.18 -0.04 -0.86 16 3 C -0.15 -2.49 7.78 71.98 0.56 -1.93 16 4 C -0.10 -1.22 4.73 30.59 0.14 -1.08 16 5 C -0.10 -1.92 4.45 30.59 0.14 -1.78 16 6 C -0.09 -1.67 1.65 -11.54 -0.02 -1.69 16 7 C 0.50 13.57 6.74 87.66 0.59 14.16 16 8 O -0.58 -21.92 15.49 -3.05 -0.05 -21.97 16 9 N -0.61 -14.49 2.19 -817.95 -1.79 -16.28 16 10 C 0.10 1.35 5.82 86.38 0.50 1.85 16 11 C -0.16 -2.45 5.78 30.30 0.18 -2.27 16 12 C 0.06 1.58 6.37 71.50 0.46 2.03 16 13 O -0.40 -14.51 9.38 -117.87 -1.11 -15.62 16 14 C 0.11 4.12 2.68 31.21 0.08 4.20 16 15 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 16 C 0.16 7.37 5.92 86.38 0.51 7.88 16 17 N -0.74 -41.92 5.54 -343.46 -1.90 -43.82 16 18 C -0.25 -14.94 9.99 84.03 0.84 -14.10 16 19 H 0.08 4.43 7.83 -2.91 -0.02 4.40 16 20 C -0.08 -4.77 5.50 84.86 0.47 -4.31 16 21 N -0.97 -62.81 13.06 21.65 0.28 -62.53 16 22 Si 0.98 48.34 29.55 68.60 2.03 50.37 16 23 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 24 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 25 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 26 C 0.09 2.76 4.90 87.26 0.43 3.19 16 27 C -0.11 -1.89 4.69 30.58 0.14 -1.75 16 28 C -0.10 -1.14 4.73 30.58 0.14 -1.00 16 29 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 30 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.04 0.90 4.81 -2.39 -0.01 0.89 16 33 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 34 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.05 1.22 6.16 -2.39 -0.01 1.20 16 39 H 0.13 1.34 6.41 -2.39 -0.02 1.32 16 40 H 0.11 0.99 4.81 -2.39 -0.01 0.98 16 41 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 42 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.07 1.35 8.01 -2.38 -0.02 1.33 16 44 H 0.04 1.12 6.38 -2.39 -0.02 1.11 16 45 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 46 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 47 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 48 H 0.37 22.70 7.65 -92.71 -0.71 22.00 16 49 H 0.25 15.62 8.31 -92.71 -0.77 14.85 16 50 H 0.10 2.61 8.11 -2.39 -0.02 2.59 16 51 H 0.08 2.55 7.21 -2.39 -0.02 2.53 16 52 H 0.04 1.05 6.43 -2.39 -0.02 1.03 16 53 H 0.07 1.15 6.42 -2.38 -0.02 1.14 16 54 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 55 H 0.07 0.81 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -79.39 406.35 3.35 -76.05 By element: Atomic # 1 Polarization: 31.76 SS G_CDS: 0.15 Total: 31.92 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: 5.73 Total: 1.89 kcal Atomic # 7 Polarization: -119.22 SS G_CDS: -3.41 Total: -122.63 kcal Atomic # 8 Polarization: -36.43 SS G_CDS: -1.15 Total: -37.58 kcal Atomic # 14 Polarization: 48.34 SS G_CDS: 2.03 Total: 50.37 kcal Total: -79.39 3.35 -76.05 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202174506.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.119 kcal (2) G-P(sol) polarization free energy of solvation -79.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds