Wall clock time and date at job start Tue Mar 31 2020 21:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47279 * 2 1 4 4 C 1.52991 * 109.47250 * 239.99824 * 2 1 3 5 5 C 1.53000 * 109.47250 * 179.97438 * 4 2 1 6 6 C 1.52998 * 109.47209 * 60.00038 * 5 4 2 7 7 C 1.53000 * 109.47165 * 300.00122 * 6 5 4 8 8 C 1.53000 * 109.47157 * 59.99846 * 7 6 5 9 9 H 1.09001 * 109.46827 * 59.99862 * 8 7 6 10 10 C 1.50695 * 109.47279 * 180.02562 * 8 7 6 11 11 O 1.21277 * 120.00330 * 104.13003 * 10 8 7 12 12 N 1.34786 * 119.99721 * 283.85547 * 10 8 7 13 13 C 1.47506 * 118.75707 * 355.09803 * 12 10 8 14 14 C 1.53570 * 111.02713 * 138.34874 * 13 12 10 15 15 C 1.51531 * 109.58411 * 320.02586 * 14 13 12 16 16 O 1.42147 * 108.76236 * 91.39822 * 15 14 13 17 17 C 1.38015 * 119.43743 * 272.77435 * 16 15 14 18 18 H 1.08997 * 109.46981 * 303.42247 * 17 16 15 19 19 C 1.53007 * 109.47023 * 183.43058 * 17 16 15 20 20 N 1.46494 * 109.47346 * 64.99534 * 19 17 16 21 21 C 1.36937 * 120.00216 * 179.97438 * 20 19 17 22 22 H 1.07994 * 120.00109 * 0.02562 * 21 20 19 23 23 C 1.38813 * 119.99996 * 179.97438 * 21 20 19 24 24 N 1.31619 * 119.99887 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99716 * 179.97438 * 23 21 20 26 26 H 1.48510 * 109.46714 * 90.00785 * 25 23 21 27 27 H 1.48506 * 109.47035 * 210.00027 * 25 23 21 28 28 H 1.48497 * 109.47720 * 330.00544 * 25 23 21 29 29 C 1.45125 * 118.75243 * 174.82804 * 12 10 8 30 30 H 1.09008 * 109.47188 * 300.00122 * 1 2 3 31 31 H 1.08999 * 109.46914 * 59.99889 * 1 2 3 32 32 H 1.09000 * 109.46872 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47098 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.46775 * 300.00176 * 3 2 1 35 35 H 1.09008 * 109.47110 * 59.99831 * 3 2 1 36 36 H 1.09001 * 109.47452 * 299.99920 * 4 2 1 37 37 H 1.09007 * 109.47276 * 60.00290 * 4 2 1 38 38 H 1.09008 * 109.47188 * 180.02562 * 5 4 2 39 39 H 1.08995 * 109.47313 * 299.99809 * 5 4 2 40 40 H 1.09001 * 109.47010 * 60.00376 * 6 5 4 41 41 H 1.09003 * 109.47009 * 179.97438 * 6 5 4 42 42 H 1.09000 * 109.46890 * 300.00274 * 7 6 5 43 43 H 1.08999 * 109.47109 * 179.97438 * 7 6 5 44 44 H 1.08998 * 109.16674 * 258.74819 * 13 12 10 45 45 H 1.08998 * 109.16674 * 17.95106 * 13 12 10 46 46 H 1.09005 * 109.45099 * 80.05814 * 14 13 12 47 47 H 1.09000 * 109.45571 * 200.00765 * 14 13 12 48 48 H 1.08998 * 109.58905 * 211.18197 * 15 14 13 49 49 H 1.09000 * 109.59099 * 331.46686 * 15 14 13 50 50 H 1.09002 * 109.46874 * 185.00105 * 19 17 16 51 51 H 1.09001 * 109.46608 * 304.99678 * 19 17 16 52 52 H 0.97004 * 119.99859 * 0.02562 * 20 19 17 53 53 H 0.97006 * 119.99777 * 179.97438 * 24 23 21 54 54 H 1.08999 * 109.46330 * 29.33162 * 29 12 10 55 55 H 1.09002 * 109.45116 * 149.28500 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 3.5700 -0.7207 -1.2495 6 6 4.0805 -1.4415 -0.0002 7 6 3.5705 -0.7203 1.2490 8 6 2.0405 -0.7208 1.2493 9 1 1.6776 -1.7486 1.2495 10 6 1.5382 -0.0099 2.4794 11 8 1.0939 1.1151 2.3907 12 7 1.5776 -0.6264 3.6774 13 6 2.0148 -2.0339 3.7371 14 6 2.9411 -2.2727 4.9385 15 6 3.8810 -1.0947 5.0972 16 8 3.2865 -0.1510 5.9785 17 6 2.4336 0.8078 5.4705 18 1 2.9483 1.3795 4.6983 19 6 1.9961 1.7485 6.5951 20 7 3.1584 2.4883 7.0929 21 6 3.0092 3.3961 8.1073 22 1 2.0348 3.5663 8.5406 23 6 4.1107 4.0966 8.5793 24 7 5.2984 3.8887 8.0516 25 14 3.9070 5.3354 9.9625 26 1 4.0928 4.6538 11.2688 27 1 4.9205 6.4110 9.8170 28 1 2.5460 5.9262 9.9016 29 6 1.1938 0.1215 4.8604 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 1.6767 -1.7489 -1.2492 37 1 1.6767 -0.2074 -2.1392 38 1 3.9334 -1.2342 -2.1397 39 1 3.9330 0.3071 -1.2498 40 1 3.7176 -2.4693 0.0000 41 1 5.1706 -1.4415 -0.0007 42 1 3.9334 0.3075 1.2487 43 1 3.9339 -1.2341 2.1390 44 1 1.1394 -2.6771 3.8267 45 1 2.5479 -2.2823 2.8194 46 1 2.3420 -2.3833 5.8424 47 1 3.5217 -3.1804 4.7745 48 1 4.8286 -1.4367 5.5132 49 1 4.0543 -0.6319 4.1257 50 1 1.2546 2.4506 6.2137 51 1 1.5610 1.1661 7.4073 52 1 4.0336 2.3356 6.7035 53 1 6.0681 4.3786 8.3812 54 1 0.4608 0.8809 4.5880 55 1 0.7579 -0.5573 5.5934 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202183080.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:29 Heat of formation + Delta-G solvation = -94.949654 kcal Electronic energy + Delta-G solvation = -32458.287964 eV Core-core repulsion = 28494.352952 eV Total energy + Delta-G solvation = -3963.935012 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.27205 -40.52785 -38.81653 -36.99964 -36.29559 -34.37194 -33.98727 -32.69884 -32.29752 -30.22424 -28.33821 -27.99036 -27.34553 -26.53020 -24.82720 -23.91669 -22.79513 -22.35447 -21.98135 -20.38598 -19.27753 -19.15906 -18.37756 -17.78381 -17.48191 -16.86031 -16.55988 -16.31810 -16.04049 -15.61168 -15.41723 -15.26925 -15.15431 -14.93194 -14.80639 -14.62004 -14.09956 -14.00275 -13.85507 -13.73215 -13.39340 -13.37357 -13.12919 -12.84015 -12.83648 -12.77414 -12.63044 -12.42178 -12.36515 -12.21141 -12.11970 -12.04247 -11.88317 -11.79250 -11.72278 -11.46335 -11.43647 -11.05476 -10.99457 -10.93541 -10.55117 -10.17835 -9.59633 -9.03353 -7.95626 -5.25682 1.45320 1.48715 1.56926 1.58680 1.96403 2.55113 2.71723 3.37717 3.40213 3.60412 3.63560 3.72764 3.84159 3.96666 4.01073 4.07203 4.14313 4.16954 4.27149 4.28300 4.37173 4.37988 4.41027 4.42471 4.49538 4.53987 4.56152 4.68470 4.70457 4.74908 4.83812 4.84658 4.86623 4.89126 4.98918 5.04691 5.07461 5.11768 5.13425 5.14297 5.21632 5.23656 5.24360 5.31068 5.41247 5.45144 5.45593 5.54041 5.59855 5.75686 6.24751 6.35076 6.74713 7.23168 7.30925 8.04571 8.30166 9.28278 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015768 B = 0.002932 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.279452 B = 9546.792934 C = 9938.361552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.041 4.041 3 C -0.164 4.164 4 C -0.102 4.102 5 C -0.125 4.125 6 C -0.109 4.109 7 C -0.115 4.115 8 C -0.088 4.088 9 H 0.120 0.880 10 C 0.506 3.494 11 O -0.563 6.563 12 N -0.609 5.609 13 C 0.096 3.904 14 C -0.156 4.156 15 C 0.063 3.937 16 O -0.398 6.398 17 C 0.108 3.892 18 H 0.017 0.983 19 C 0.163 3.837 20 N -0.740 5.740 21 C -0.249 4.249 22 H 0.077 0.923 23 C -0.077 4.077 24 N -0.970 5.970 25 Si 0.980 3.020 26 H -0.284 1.284 27 H -0.294 1.294 28 H -0.268 1.268 29 C 0.094 3.906 30 H 0.040 0.960 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.049 0.951 34 H 0.047 0.953 35 H 0.065 0.935 36 H 0.080 0.920 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.051 0.949 40 H 0.085 0.915 41 H 0.070 0.930 42 H 0.045 0.955 43 H 0.076 0.924 44 H 0.091 0.909 45 H 0.110 0.890 46 H 0.073 0.927 47 H 0.121 0.879 48 H 0.094 0.906 49 H 0.044 0.956 50 H 0.033 0.967 51 H 0.032 0.968 52 H 0.373 0.627 53 H 0.251 0.749 54 H 0.078 0.922 55 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.712 -20.984 -20.733 30.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.041 4.041 3 C -0.221 4.221 4 C -0.139 4.139 5 C -0.162 4.162 6 C -0.146 4.146 7 C -0.153 4.153 8 C -0.109 4.109 9 H 0.137 0.863 10 C 0.296 3.704 11 O -0.442 6.442 12 N -0.341 5.341 13 C -0.025 4.025 14 C -0.194 4.194 15 C -0.013 4.013 16 O -0.317 6.317 17 C 0.048 3.952 18 H 0.035 0.965 19 C 0.036 3.964 20 N -0.382 5.382 21 C -0.381 4.381 22 H 0.095 0.905 23 C -0.269 4.269 24 N -0.621 5.621 25 Si 0.808 3.192 26 H -0.211 1.211 27 H -0.220 1.220 28 H -0.193 1.193 29 C -0.031 4.031 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.069 0.931 40 H 0.104 0.896 41 H 0.089 0.911 42 H 0.064 0.936 43 H 0.094 0.906 44 H 0.109 0.891 45 H 0.128 0.872 46 H 0.092 0.908 47 H 0.139 0.861 48 H 0.112 0.888 49 H 0.063 0.937 50 H 0.051 0.949 51 H 0.050 0.950 52 H 0.204 0.796 53 H 0.060 0.940 54 H 0.096 0.904 55 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.043 -20.342 -20.464 29.701 hybrid contribution 0.403 1.352 0.637 1.548 sum -6.640 -18.990 -19.826 28.245 Atomic orbital electron populations 1.21920 0.94673 1.01885 1.01640 1.20282 0.95236 0.94833 0.93762 1.22341 1.00425 0.96816 1.02470 1.21580 0.95644 1.00821 0.95853 1.21619 0.95502 1.00645 0.98459 1.21492 1.00753 0.99818 0.92565 1.21650 0.92145 1.01223 1.00281 1.21435 0.97437 1.01007 0.91008 0.86251 1.21467 0.77204 0.86207 0.85523 1.90568 1.46929 1.20938 1.85772 1.48080 1.66357 1.13719 1.05991 1.22398 0.99636 0.79614 1.00823 1.22435 0.98544 0.99510 0.98934 1.22435 0.96519 0.88851 0.93492 1.86354 1.62484 1.43921 1.38911 1.21750 0.90607 0.88430 0.94430 0.96538 1.20745 0.90060 0.91707 0.93919 1.42424 1.06487 1.47139 1.42198 1.19680 0.94496 1.13902 1.09985 0.90468 1.25654 0.95149 1.03032 1.03110 1.69855 0.99310 1.46563 1.46368 0.85056 0.77289 0.78127 0.78763 1.21071 1.22016 1.19329 1.21946 0.96536 0.96875 0.87711 0.94075 0.92436 0.91506 0.93205 0.93400 0.91629 0.90164 0.91628 0.90432 0.93059 0.89594 0.91129 0.93587 0.90602 0.89083 0.87181 0.90780 0.86079 0.88817 0.93717 0.94892 0.94989 0.79560 0.93978 0.90374 0.88292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 8.18 71.98 0.59 -2.16 16 2 C -0.04 -0.75 0.51 -52.18 -0.03 -0.77 16 3 C -0.16 -4.00 7.47 71.98 0.54 -3.46 16 4 C -0.10 -1.29 4.73 30.59 0.14 -1.15 16 5 C -0.12 -1.52 5.65 30.59 0.17 -1.35 16 6 C -0.11 -1.21 5.92 30.59 0.18 -1.02 16 7 C -0.12 -1.89 4.57 30.59 0.14 -1.75 16 8 C -0.09 -1.53 0.97 -11.54 -0.01 -1.54 16 9 H 0.12 1.38 6.92 -2.39 -0.02 1.36 16 10 C 0.51 12.95 6.11 87.65 0.54 13.48 16 11 O -0.56 -19.31 11.07 -3.02 -0.03 -19.34 16 12 N -0.61 -14.12 2.21 -819.02 -1.81 -15.92 16 13 C 0.10 1.35 5.53 86.38 0.48 1.83 16 14 C -0.16 -2.48 5.78 30.30 0.18 -2.31 16 15 C 0.06 1.58 6.37 71.50 0.46 2.04 16 16 O -0.40 -14.47 9.38 -117.87 -1.11 -15.58 16 17 C 0.11 4.06 2.67 31.03 0.08 4.15 16 18 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 19 C 0.16 7.32 5.92 86.38 0.51 7.83 16 20 N -0.74 -41.68 5.54 -343.45 -1.90 -43.58 16 21 C -0.25 -14.92 9.99 84.03 0.84 -14.08 16 22 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 23 C -0.08 -4.70 5.50 84.86 0.47 -4.23 16 24 N -0.97 -62.60 13.06 21.65 0.28 -62.32 16 25 Si 0.98 48.21 29.55 68.60 2.03 50.24 16 26 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 27 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 28 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 29 C 0.09 2.74 4.87 87.07 0.42 3.17 16 30 H 0.04 1.04 6.11 -2.38 -0.01 1.03 16 31 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.05 1.20 4.80 -2.39 -0.01 1.18 16 34 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.07 2.11 5.01 -2.41 -0.01 2.10 16 36 H 0.08 0.74 8.14 -2.39 -0.02 0.73 16 37 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 38 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 39 H 0.05 0.80 6.43 -2.39 -0.02 0.78 16 40 H 0.09 0.60 8.14 -2.39 -0.02 0.59 16 41 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.05 1.03 6.43 -2.39 -0.02 1.02 16 43 H 0.08 1.12 5.33 -2.39 -0.01 1.11 16 44 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.11 1.04 4.38 -2.39 -0.01 1.03 16 46 H 0.07 1.36 8.01 -2.38 -0.02 1.34 16 47 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 48 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 49 H 0.04 1.15 6.20 -2.39 -0.01 1.13 16 50 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 51 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 52 H 0.37 22.60 7.65 -92.71 -0.71 21.89 16 53 H 0.25 15.58 8.31 -92.70 -0.77 14.81 16 54 H 0.08 2.53 7.20 -2.39 -0.02 2.51 16 55 H 0.10 2.52 8.12 -2.39 -0.02 2.50 16 Total: -1.00 -77.01 395.58 3.33 -73.68 By element: Atomic # 1 Polarization: 33.97 SS G_CDS: 0.17 Total: 34.13 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: 5.70 Total: -1.31 kcal Atomic # 7 Polarization: -118.40 SS G_CDS: -3.43 Total: -121.82 kcal Atomic # 8 Polarization: -33.78 SS G_CDS: -1.14 Total: -34.92 kcal Atomic # 14 Polarization: 48.21 SS G_CDS: 2.03 Total: 50.24 kcal Total: -77.01 3.33 -73.68 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202183080.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.266 kcal (2) G-P(sol) polarization free energy of solvation -77.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds