Wall clock time and date at job start Tue Mar 31 2020 21:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52989 * 109.47116 * 2 1 4 4 C 1.53001 * 109.46950 * 239.99897 * 2 1 3 5 5 C 1.52997 * 109.47557 * 300.00373 * 4 2 1 6 6 C 1.53008 * 109.46910 * 299.99996 * 5 4 2 7 7 C 1.53001 * 109.47007 * 59.99667 * 6 5 4 8 8 C 1.52995 * 109.47217 * 120.00263 * 2 1 3 9 9 H 1.08999 * 109.47150 * 179.97438 * 8 2 1 10 10 C 1.50697 * 109.46991 * 300.00034 * 8 2 1 11 11 O 1.21278 * 120.00551 * 87.73555 * 10 8 2 12 12 N 1.34782 * 119.99710 * 267.73091 * 10 8 2 13 13 C 1.47508 * 118.75735 * 354.39875 * 12 10 8 14 14 C 1.53575 * 111.02967 * 221.65496 * 13 12 10 15 15 C 1.51530 * 109.57659 * 39.97766 * 14 13 12 16 16 O 1.42152 * 108.75805 * 268.59719 * 15 14 13 17 17 C 1.38013 * 119.43920 * 87.22992 * 16 15 14 18 18 H 1.09003 * 109.47020 * 56.57956 * 17 16 15 19 19 C 1.52999 * 109.46760 * 176.57649 * 17 16 15 20 20 N 1.46505 * 109.47281 * 299.99939 * 19 17 16 21 21 C 1.36930 * 120.00197 * 180.02562 * 20 19 17 22 22 H 1.07993 * 120.00163 * 0.02562 * 21 20 19 23 23 C 1.38814 * 119.99979 * 180.02562 * 21 20 19 24 24 N 1.31620 * 120.00215 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99922 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47369 * 59.99902 * 25 23 21 27 27 H 1.48505 * 109.47060 * 179.97438 * 25 23 21 28 28 H 1.48495 * 109.47156 * 299.99364 * 25 23 21 29 29 C 1.45121 * 118.75729 * 174.42188 * 12 10 8 30 30 H 1.08999 * 109.46776 * 299.99394 * 1 2 3 31 31 H 1.08999 * 109.47235 * 59.99780 * 1 2 3 32 32 H 1.09004 * 109.46589 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47462 * 180.02562 * 3 2 1 34 34 H 1.09007 * 109.47551 * 300.00331 * 3 2 1 35 35 H 1.09000 * 109.47218 * 60.00297 * 3 2 1 36 36 H 1.09002 * 109.46789 * 59.99598 * 4 2 1 37 37 H 1.08999 * 109.47151 * 180.02562 * 4 2 1 38 38 H 1.08998 * 109.47641 * 59.99467 * 5 4 2 39 39 H 1.09000 * 109.47480 * 179.97438 * 5 4 2 40 40 H 1.09001 * 109.47129 * 179.97438 * 6 5 4 41 41 H 1.08999 * 109.46946 * 299.99809 * 6 5 4 42 42 H 1.08999 * 109.46889 * 180.02562 * 7 6 5 43 43 H 1.08999 * 109.47151 * 60.00268 * 7 6 5 44 44 H 1.08999 * 109.16755 * 342.05237 * 13 12 10 45 45 H 1.08995 * 109.16344 * 101.25495 * 13 12 10 46 46 H 1.08995 * 109.44866 * 160.01542 * 14 13 12 47 47 H 1.09001 * 109.44606 * 279.94564 * 14 13 12 48 48 H 1.08999 * 109.58746 * 148.81897 * 15 14 13 49 49 H 1.08997 * 109.59687 * 28.38545 * 15 14 13 50 50 H 1.08998 * 109.47615 * 59.99865 * 19 17 16 51 51 H 1.09001 * 109.47558 * 180.02562 * 19 17 16 52 52 H 0.97006 * 119.99368 * 359.97438 * 20 19 17 53 53 H 0.96993 * 120.00286 * 179.97438 * 24 23 21 54 54 H 1.09005 * 109.45966 * 330.67412 * 29 12 10 55 55 H 1.08996 * 109.46112 * 210.71322 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5300 -2.1637 -1.2494 6 6 2.0400 -2.8851 -0.0001 7 6 1.5300 -2.1638 1.2492 8 6 2.0401 -0.7213 1.2492 9 1 3.1301 -0.7217 1.2489 10 6 1.5378 -0.0109 2.4796 11 8 0.4592 -0.3033 2.9508 12 7 2.2872 0.9493 3.0565 13 6 3.6457 1.1968 2.5377 14 6 4.6417 1.4201 3.6852 15 6 4.3377 0.4580 4.8158 16 8 3.4386 1.0854 5.7206 17 6 2.0795 0.9960 5.4978 18 1 1.7886 -0.0530 5.4423 19 6 1.3288 1.6733 6.6461 20 7 1.6618 1.0067 7.9076 21 6 1.1046 1.4424 9.0801 22 1 0.4194 2.2771 9.0749 23 6 1.4205 0.8111 10.2753 24 7 2.2552 -0.2065 10.2816 25 14 0.6598 1.4050 11.8747 26 1 -0.8187 1.2949 11.7906 27 1 1.1548 0.5698 12.9984 28 1 1.0383 2.8221 12.1066 29 6 1.7274 1.7003 4.1649 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3632 -1.0277 0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6768 1.9562 0.8900 36 1 1.6766 -0.2075 -2.1392 37 1 3.1300 -0.7217 -1.2491 38 1 0.4400 -2.1638 -1.2493 39 1 1.8929 -2.6774 -2.1396 40 1 1.6763 -3.9126 0.0001 41 1 3.1300 -2.8851 -0.0001 42 1 1.8937 -2.6774 2.1391 43 1 0.4401 -2.1638 1.2492 44 1 3.9657 0.3376 1.9483 45 1 3.6298 2.0809 1.9005 46 1 5.6556 1.2476 3.3245 47 1 4.5547 2.4446 4.0470 48 1 5.2607 0.2023 5.3362 49 1 3.8801 -0.4458 4.4136 50 1 1.6197 2.7223 6.7018 51 1 0.2554 1.6024 6.4705 52 1 2.2764 0.2562 7.9120 53 1 2.4762 -0.6474 11.1168 54 1 0.6440 1.7532 4.0573 55 1 2.1416 2.7085 4.1665 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202183083.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:42 Heat of formation + Delta-G solvation = -98.527852 kcal Electronic energy + Delta-G solvation = -32306.644977 eV Core-core repulsion = 28342.554803 eV Total energy + Delta-G solvation = -3964.090174 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.26815 -40.49856 -38.87045 -36.96366 -36.27234 -34.35761 -34.16289 -32.68535 -32.19824 -30.23656 -28.59229 -27.78960 -27.47356 -26.56552 -24.94206 -23.72067 -22.74619 -22.31863 -22.13053 -20.40602 -19.27763 -18.93822 -18.41385 -17.73627 -17.55947 -17.15509 -16.58594 -16.36050 -16.07765 -15.63995 -15.35261 -15.20177 -15.16019 -14.82713 -14.68838 -14.58055 -14.04779 -13.97745 -13.89599 -13.78068 -13.47911 -13.35772 -13.14425 -12.92913 -12.82492 -12.74458 -12.66031 -12.49304 -12.35449 -12.26231 -12.19849 -12.08766 -11.89025 -11.86262 -11.75029 -11.48206 -11.36572 -11.00357 -10.98755 -10.95437 -10.56509 -10.45808 -9.61289 -9.03498 -7.95406 -5.25671 1.44798 1.49925 1.55739 1.59634 1.94056 2.55094 2.70787 3.37387 3.40097 3.59654 3.62404 3.67488 3.82461 3.90307 4.00630 4.06440 4.13293 4.16216 4.18027 4.26219 4.35669 4.37609 4.41120 4.44095 4.47237 4.54093 4.54800 4.66950 4.73042 4.77084 4.79023 4.84742 4.85056 4.87654 4.97530 5.03542 5.05238 5.07175 5.11284 5.15617 5.19395 5.20844 5.26652 5.28438 5.40251 5.44456 5.44695 5.46254 5.55005 5.64930 6.24669 6.32314 6.74047 7.18284 7.30855 8.04876 8.30831 9.28399 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.019606 B = 0.002704 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.825953 B =10354.037606 C =10681.646873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.045 4.045 3 C -0.150 4.150 4 C -0.099 4.099 5 C -0.123 4.123 6 C -0.111 4.111 7 C -0.108 4.108 8 C -0.093 4.093 9 H 0.117 0.883 10 C 0.509 3.491 11 O -0.580 6.580 12 N -0.606 5.606 13 C 0.096 3.904 14 C -0.157 4.157 15 C 0.064 3.936 16 O -0.396 6.396 17 C 0.107 3.893 18 H 0.016 0.984 19 C 0.163 3.837 20 N -0.740 5.740 21 C -0.251 4.251 22 H 0.077 0.923 23 C -0.078 4.078 24 N -0.971 5.971 25 Si 0.981 3.019 26 H -0.277 1.277 27 H -0.293 1.293 28 H -0.274 1.274 29 C 0.097 3.903 30 H 0.029 0.971 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.082 0.918 34 H 0.067 0.933 35 H 0.040 0.960 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.056 0.944 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.045 0.955 43 H 0.054 0.946 44 H 0.109 0.891 45 H 0.097 0.903 46 H 0.122 0.878 47 H 0.075 0.925 48 H 0.094 0.906 49 H 0.039 0.961 50 H 0.033 0.967 51 H 0.031 0.969 52 H 0.374 0.626 53 H 0.252 0.748 54 H 0.075 0.925 55 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.515 0.795 -31.696 32.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.045 4.045 3 C -0.207 4.207 4 C -0.137 4.137 5 C -0.161 4.161 6 C -0.149 4.149 7 C -0.146 4.146 8 C -0.113 4.113 9 H 0.134 0.866 10 C 0.299 3.701 11 O -0.459 6.459 12 N -0.338 5.338 13 C -0.024 4.024 14 C -0.195 4.195 15 C -0.011 4.011 16 O -0.316 6.316 17 C 0.046 3.954 18 H 0.033 0.967 19 C 0.036 3.964 20 N -0.382 5.382 21 C -0.382 4.382 22 H 0.095 0.905 23 C -0.270 4.270 24 N -0.622 5.622 25 Si 0.809 3.191 26 H -0.204 1.204 27 H -0.219 1.219 28 H -0.200 1.200 29 C -0.028 4.028 30 H 0.048 0.952 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.101 0.899 34 H 0.086 0.914 35 H 0.060 0.940 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.074 0.926 39 H 0.097 0.903 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.064 0.936 43 H 0.073 0.927 44 H 0.127 0.873 45 H 0.115 0.885 46 H 0.140 0.860 47 H 0.093 0.907 48 H 0.112 0.888 49 H 0.057 0.943 50 H 0.051 0.949 51 H 0.049 0.951 52 H 0.205 0.795 53 H 0.060 0.940 54 H 0.093 0.907 55 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 5.925 0.885 -31.218 31.787 hybrid contribution -0.696 -0.407 1.490 1.694 sum 5.229 0.478 -29.728 30.188 Atomic orbital electron populations 1.21990 0.95515 1.01818 1.00916 1.20408 0.95145 0.95656 0.93293 1.22123 1.02406 0.94262 1.01942 1.21574 1.01558 0.94797 0.95749 1.21617 1.00784 0.95905 0.97763 1.21508 1.01482 0.98732 0.93171 1.21453 1.00997 0.93381 0.98798 1.21578 1.02676 0.95500 0.91588 0.86574 1.21399 0.84221 0.79083 0.85387 1.90694 1.24484 1.64965 1.65774 1.48060 1.16623 1.36349 1.32784 1.22552 0.79128 1.04332 0.96421 1.22461 1.01220 1.00811 0.95020 1.22396 0.92590 0.94873 0.91286 1.86354 1.15490 1.76024 1.53683 1.21844 0.82019 0.96999 0.94493 0.96650 1.20748 0.95603 0.95490 0.84549 1.42406 1.54791 1.38591 1.02431 1.19652 1.20381 1.11877 0.86295 0.90476 1.25673 1.01042 0.98903 1.01385 1.69850 1.40065 1.25647 1.26596 0.85110 0.77927 0.77527 0.78567 1.20356 1.21881 1.20015 1.22039 0.99804 0.95997 0.84935 0.95215 0.91532 0.92555 0.89941 0.91362 0.94046 0.90468 0.89928 0.92577 0.90305 0.91662 0.90420 0.93622 0.92699 0.87329 0.88534 0.86018 0.90654 0.88815 0.94293 0.94922 0.95128 0.79494 0.93955 0.90698 0.88086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 7.39 71.98 0.53 -2.23 16 2 C -0.04 -0.62 0.54 -52.18 -0.03 -0.65 16 3 C -0.15 -1.74 6.79 71.98 0.49 -1.25 16 4 C -0.10 -0.90 4.73 30.59 0.14 -0.76 16 5 C -0.12 -1.30 5.65 30.60 0.17 -1.13 16 6 C -0.11 -1.44 5.92 30.60 0.18 -1.26 16 7 C -0.11 -2.16 4.55 30.60 0.14 -2.02 16 8 C -0.09 -1.65 1.48 -11.54 -0.02 -1.66 16 9 H 0.12 1.45 5.46 -2.39 -0.01 1.43 16 10 C 0.51 13.54 4.99 87.66 0.44 13.98 16 11 O -0.58 -21.37 14.56 -3.02 -0.04 -21.42 16 12 N -0.61 -14.31 1.58 -817.97 -1.29 -15.60 16 13 C 0.10 1.37 4.33 86.38 0.37 1.74 16 14 C -0.16 -2.58 5.79 30.31 0.18 -2.41 16 15 C 0.06 1.70 6.37 71.50 0.46 2.16 16 16 O -0.40 -14.89 9.18 -117.84 -1.08 -15.97 16 17 C 0.11 4.13 2.73 31.21 0.09 4.22 16 18 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 19 C 0.16 7.48 5.95 86.38 0.51 7.99 16 20 N -0.74 -42.23 5.49 -343.45 -1.88 -44.11 16 21 C -0.25 -15.14 9.99 84.04 0.84 -14.30 16 22 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 23 C -0.08 -4.77 5.50 84.86 0.47 -4.30 16 24 N -0.97 -63.15 13.06 21.65 0.28 -62.87 16 25 Si 0.98 48.48 29.55 68.60 2.03 50.51 16 26 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 27 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 28 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 29 C 0.10 2.88 4.82 87.25 0.42 3.30 16 30 H 0.03 0.75 6.56 -2.39 -0.02 0.74 16 31 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.06 1.14 4.81 -2.39 -0.01 1.13 16 33 H 0.08 0.57 6.97 -2.39 -0.02 0.55 16 34 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 35 H 0.04 0.66 6.23 -2.39 -0.01 0.65 16 36 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.06 0.72 6.43 -2.39 -0.02 0.71 16 39 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.05 1.36 6.14 -2.39 -0.01 1.34 16 44 H 0.11 1.04 5.24 -2.39 -0.01 1.03 16 45 H 0.10 0.95 6.63 -2.39 -0.02 0.94 16 46 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 47 H 0.07 1.41 8.01 -2.39 -0.02 1.39 16 48 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 49 H 0.04 1.07 7.40 -2.39 -0.02 1.05 16 50 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 51 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 52 H 0.37 22.95 7.53 -92.70 -0.70 22.25 16 53 H 0.25 15.73 8.31 -92.71 -0.77 14.96 16 54 H 0.07 2.46 7.36 -2.38 -0.02 2.44 16 55 H 0.10 2.59 8.11 -2.39 -0.02 2.57 16 Total: -1.00 -79.56 397.15 3.57 -76.00 By element: Atomic # 1 Polarization: 31.88 SS G_CDS: 0.17 Total: 32.05 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: 5.38 Total: 1.41 kcal Atomic # 7 Polarization: -119.69 SS G_CDS: -2.89 Total: -122.58 kcal Atomic # 8 Polarization: -36.26 SS G_CDS: -1.13 Total: -37.39 kcal Atomic # 14 Polarization: 48.48 SS G_CDS: 2.03 Total: 50.51 kcal Total: -79.56 3.57 -76.00 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202183083.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.528 kcal (2) G-P(sol) polarization free energy of solvation -79.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds