Wall clock time and date at job start Tue Mar 31 2020 21:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 115.56682 * 2 1 4 4 C 1.53078 * 117.51317 * 214.29732 * 2 1 3 5 5 C 1.53003 * 117.49707 * 145.04022 * 4 2 1 6 6 C 1.53002 * 117.53312 * 359.97438 * 4 2 1 7 7 C 1.53002 * 59.98618 * 252.52464 * 4 2 1 8 8 C 1.53001 * 117.50012 * 252.50126 * 7 4 2 9 9 C 1.50702 * 117.50059 * 107.49814 * 7 4 2 10 10 O 1.21279 * 119.99803 * 36.90148 * 9 7 4 11 11 N 1.34773 * 119.99971 * 216.90015 * 9 7 4 12 12 C 1.47508 * 118.75701 * 172.41682 * 11 9 7 13 13 C 1.53565 * 111.03323 * 138.39612 * 12 11 9 14 14 C 1.51542 * 109.57577 * 320.01979 * 13 12 11 15 15 O 1.42156 * 108.75327 * 91.40180 * 14 13 12 16 16 C 1.38010 * 119.44284 * 272.76691 * 15 14 13 17 17 H 1.09002 * 109.47017 * 303.43487 * 16 15 14 18 18 C 1.52995 * 109.47343 * 183.42909 * 16 15 14 19 19 N 1.46511 * 109.46666 * 64.99129 * 18 16 15 20 20 C 1.36933 * 119.99827 * 180.02562 * 19 18 16 21 21 H 1.08004 * 120.00203 * 359.97438 * 20 19 18 22 22 C 1.38808 * 119.99846 * 180.02562 * 20 19 18 23 23 N 1.31616 * 120.00336 * 359.72564 * 22 20 19 24 24 Si 1.86808 * 119.99972 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46938 * 269.72530 * 24 22 20 26 26 H 1.48502 * 109.46805 * 29.72470 * 24 22 20 27 27 H 1.48496 * 109.47249 * 149.72318 * 24 22 20 28 28 C 1.45121 * 118.75814 * 352.44142 * 11 9 7 29 29 H 1.08994 * 109.47512 * 282.19908 * 1 2 3 30 30 H 1.09002 * 109.47015 * 42.19992 * 1 2 3 31 31 H 1.08998 * 109.47454 * 162.19569 * 1 2 3 32 32 H 1.08998 * 109.47871 * 196.99159 * 3 2 1 33 33 H 1.09000 * 109.47171 * 316.99590 * 3 2 1 34 34 H 1.09005 * 109.46977 * 76.99087 * 3 2 1 35 35 H 1.08994 * 109.47491 * 137.27617 * 5 4 2 36 36 H 1.09001 * 109.46735 * 257.27642 * 5 4 2 37 37 H 1.09001 * 109.46905 * 17.27714 * 5 4 2 38 38 H 1.09000 * 109.47143 * 352.82619 * 6 4 2 39 39 H 1.09000 * 109.47165 * 112.82214 * 6 4 2 40 40 H 1.09001 * 109.47382 * 232.82528 * 6 4 2 41 41 H 1.08999 * 109.46782 * 262.26969 * 8 7 4 42 42 H 1.09005 * 109.46919 * 22.26383 * 8 7 4 43 43 H 1.09000 * 109.47306 * 142.26776 * 8 7 4 44 44 H 1.09004 * 109.16395 * 258.79126 * 12 11 9 45 45 H 1.09001 * 109.16525 * 18.04252 * 12 11 9 46 46 H 1.08997 * 109.45926 * 80.04870 * 13 12 11 47 47 H 1.09000 * 109.45644 * 199.99435 * 13 12 11 48 48 H 1.08997 * 109.59030 * 211.18741 * 14 13 12 49 49 H 1.09003 * 109.58876 * 331.62287 * 14 13 12 50 50 H 1.09003 * 109.47133 * 305.00222 * 18 16 15 51 51 H 1.08993 * 109.47765 * 184.99324 * 18 16 15 52 52 H 0.96999 * 119.99908 * 0.02562 * 19 18 16 53 53 H 0.97009 * 119.99506 * 0.27180 * 23 22 20 54 54 H 1.08998 * 109.46462 * 149.23761 * 28 11 9 55 55 H 1.08993 * 109.46419 * 29.27914 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2371 -1.1216 -0.7650 5 6 3.5499 -0.7765 -1.4710 6 6 1.3605 -2.1579 -1.4711 7 6 2.2364 -1.1211 0.7650 8 6 3.5486 -0.7759 1.4720 9 6 1.3719 -2.1407 1.4608 10 8 1.2548 -3.2548 0.9961 11 7 0.7289 -1.8144 2.5995 12 6 -0.2403 -2.7711 3.1662 13 6 -0.1034 -2.8549 4.6935 14 6 1.3630 -2.8212 5.0744 15 8 1.7459 -1.4708 5.2993 16 6 2.1729 -0.7008 4.2366 17 1 3.0164 -1.1899 3.7493 18 6 2.6058 0.6756 4.7455 19 7 3.7770 0.5290 5.6135 20 6 4.3447 1.6340 6.1896 21 1 3.9295 2.6135 6.0037 22 6 5.4546 1.4952 7.0116 23 7 5.9580 0.3010 7.2416 24 14 6.2297 3.0026 7.7969 25 1 7.2801 3.5443 6.8977 26 1 5.1869 4.0363 8.0191 27 1 6.8380 2.6254 9.0980 28 6 1.0159 -0.5350 3.2214 29 1 -0.3634 0.2171 1.0044 30 1 -0.3633 0.7613 -0.6903 31 1 -0.3634 -0.9784 -0.3142 32 1 3.2336 1.2839 -0.3003 33 1 1.6691 2.0323 -0.7009 34 1 2.1383 1.8077 1.0013 35 1 4.2720 -1.5762 -1.3066 36 1 3.3690 -0.6644 -2.5400 37 1 3.9440 0.1570 -1.0692 38 1 0.3167 -1.9938 -1.2035 39 1 1.4787 -2.0591 -2.5502 40 1 1.6616 -3.1591 -1.1629 41 1 4.0573 -1.6950 1.7629 42 1 4.1864 -0.2060 0.7962 43 1 3.3371 -0.1808 2.3604 44 1 -1.2506 -2.4483 2.9147 45 1 -0.0626 -3.7572 2.7371 46 1 -0.6167 -2.0091 5.1510 47 1 -0.5491 -3.7844 5.0475 48 1 1.5176 -3.4014 5.9841 49 1 1.9605 -3.2406 4.2650 50 1 1.7899 1.1276 5.3096 51 1 2.8589 1.3131 3.8985 52 1 4.1501 -0.3507 5.7801 53 1 5.5557 -0.4817 6.8335 54 1 0.1269 -0.1755 3.7395 55 1 1.3053 0.1843 2.4554 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202244015.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:50 Heat of formation + Delta-G solvation = -51.355136 kcal Electronic energy + Delta-G solvation = -33163.299447 eV Core-core repulsion = 29201.254836 eV Total energy + Delta-G solvation = -3962.044611 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.50675 -40.59229 -39.10616 -36.96344 -36.41240 -34.76616 -32.77274 -32.03779 -31.65082 -30.25971 -29.81842 -27.81782 -27.00948 -26.79295 -26.39527 -24.74755 -23.57572 -22.59850 -21.40185 -19.55758 -19.32490 -18.88050 -18.10405 -17.79822 -17.43265 -17.15313 -16.77808 -16.14098 -15.95163 -15.71241 -15.57352 -15.38273 -15.09513 -14.93513 -14.66342 -14.48263 -14.16009 -13.99383 -13.77245 -13.59629 -13.47033 -13.29261 -13.17791 -12.99801 -12.94815 -12.84005 -12.70133 -12.67227 -12.60717 -12.56758 -12.56229 -12.36323 -12.01608 -11.85447 -11.59928 -11.41718 -11.25385 -11.00630 -10.93998 -10.65835 -10.44408 -10.16122 -9.68986 -9.08464 -8.36437 -5.29833 1.42358 1.60622 1.71980 1.82050 1.85656 2.48485 2.61116 2.74204 3.27235 3.44853 3.46424 3.53133 3.56289 3.75153 3.82385 3.91270 3.97305 4.02473 4.06151 4.11819 4.20594 4.22538 4.29777 4.40871 4.43825 4.56900 4.60130 4.63809 4.64293 4.67287 4.71426 4.75591 4.77293 4.77741 4.81347 4.89606 4.94947 4.98818 5.00207 5.02658 5.05781 5.11767 5.12191 5.18422 5.24939 5.30165 5.37515 5.47548 5.60897 5.62946 6.20658 6.51215 6.63499 7.04801 7.11340 8.01466 8.14340 9.15295 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012161 B = 0.003893 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.842863 B = 7190.786640 C = 8566.759989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.085 4.085 3 C -0.126 4.126 4 C -0.086 4.086 5 C -0.122 4.122 6 C -0.119 4.119 7 C -0.163 4.163 8 C -0.119 4.119 9 C 0.552 3.448 10 O -0.567 6.567 11 N -0.601 5.601 12 C 0.107 3.893 13 C -0.152 4.152 14 C 0.070 3.930 15 O -0.398 6.398 16 C 0.088 3.912 17 H 0.040 0.960 18 C 0.169 3.831 19 N -0.751 5.751 20 C -0.330 4.330 21 H 0.071 0.929 22 C -0.105 4.105 23 N -0.977 5.977 24 Si 1.131 2.869 25 H -0.283 1.283 26 H -0.271 1.271 27 H -0.296 1.296 28 C 0.087 3.913 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.062 0.938 35 H 0.054 0.946 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.059 0.941 39 H 0.071 0.929 40 H 0.052 0.948 41 H 0.038 0.962 42 H 0.086 0.914 43 H 0.067 0.933 44 H 0.086 0.914 45 H 0.080 0.920 46 H 0.082 0.918 47 H 0.110 0.890 48 H 0.094 0.906 49 H 0.033 0.967 50 H 0.026 0.974 51 H 0.050 0.950 52 H 0.359 0.641 53 H 0.241 0.759 54 H 0.098 0.902 55 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.908 -1.516 -17.935 23.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.085 4.085 3 C -0.183 4.183 4 C -0.087 4.087 5 C -0.179 4.179 6 C -0.175 4.175 7 C -0.166 4.166 8 C -0.176 4.176 9 C 0.341 3.659 10 O -0.446 6.446 11 N -0.332 5.332 12 C -0.014 4.014 13 C -0.190 4.190 14 C -0.006 4.006 15 O -0.317 6.317 16 C 0.028 3.972 17 H 0.058 0.942 18 C 0.043 3.957 19 N -0.395 5.395 20 C -0.462 4.462 21 H 0.089 0.911 22 C -0.296 4.296 23 N -0.625 5.625 24 Si 0.955 3.045 25 H -0.210 1.210 26 H -0.196 1.196 27 H -0.223 1.223 28 C -0.037 4.037 29 H 0.081 0.919 30 H 0.102 0.898 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.071 0.929 41 H 0.057 0.943 42 H 0.104 0.896 43 H 0.086 0.914 44 H 0.104 0.896 45 H 0.098 0.902 46 H 0.101 0.899 47 H 0.128 0.872 48 H 0.113 0.887 49 H 0.052 0.948 50 H 0.044 0.956 51 H 0.067 0.933 52 H 0.190 0.810 53 H 0.052 0.948 54 H 0.116 0.884 55 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -13.944 -1.273 -17.056 22.067 hybrid contribution -0.821 -1.549 -0.728 1.898 sum -14.765 -2.821 -17.784 23.286 Atomic orbital electron populations 1.21574 0.91410 1.02679 1.02749 1.21968 0.95172 0.91242 1.00156 1.21571 1.01113 0.92751 1.02822 1.21880 0.98800 0.98606 0.89404 1.21539 0.93772 1.01933 1.00646 1.21492 0.98646 0.97545 0.99834 1.21638 0.98397 1.01081 0.95505 1.21568 0.94012 1.01073 1.00928 1.19999 0.78403 0.87292 0.80167 1.90610 1.64535 1.23074 1.66389 1.47859 1.42141 1.19006 1.24240 1.21944 0.92128 0.93507 0.93812 1.22389 0.96741 1.05129 0.94748 1.22295 0.95139 0.82078 1.01069 1.86348 1.84935 1.24140 1.36261 1.22373 0.94990 0.92007 0.87806 0.94212 1.20713 0.88736 0.92957 0.93338 1.42444 1.33534 1.05755 1.57754 1.20428 1.11496 0.88625 1.25617 0.91059 1.27216 0.97370 1.05039 0.99975 1.70958 1.44483 0.98452 1.48604 0.82595 0.75475 0.71098 0.75304 1.20954 1.19601 1.22308 1.22443 0.99099 0.85382 0.96814 0.91911 0.89778 0.92518 0.90979 0.90009 0.91945 0.92731 0.90299 0.90514 0.92204 0.90986 0.92935 0.94254 0.89554 0.91393 0.89607 0.90171 0.89928 0.87150 0.88750 0.94830 0.95556 0.93264 0.80979 0.94837 0.88403 0.87619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 8.60 71.98 0.62 -1.52 16 2 C -0.09 -1.59 1.68 -52.16 -0.09 -1.67 16 3 C -0.13 -2.01 8.68 71.98 0.62 -1.39 16 4 C -0.09 -1.79 2.70 -52.15 -0.14 -1.93 16 5 C -0.12 -2.13 8.45 71.98 0.61 -1.53 16 6 C -0.12 -2.54 8.26 71.98 0.59 -1.95 16 7 C -0.16 -3.93 1.33 -52.92 -0.07 -4.00 16 8 C -0.12 -3.15 7.23 71.98 0.52 -2.63 16 9 C 0.55 15.34 5.43 87.66 0.48 15.82 16 10 O -0.57 -18.80 13.75 -3.02 -0.04 -18.85 16 11 N -0.60 -14.80 2.19 -817.97 -1.79 -16.59 16 12 C 0.11 2.29 6.19 86.38 0.54 2.82 16 13 C -0.15 -3.11 5.79 30.31 0.18 -2.93 16 14 C 0.07 1.97 6.38 71.50 0.46 2.43 16 15 O -0.40 -14.05 9.38 -117.80 -1.11 -15.15 16 16 C 0.09 2.91 1.65 31.21 0.05 2.97 16 17 H 0.04 1.46 5.86 -2.39 -0.01 1.45 16 18 C 0.17 6.67 5.68 86.38 0.49 7.16 16 19 N -0.75 -38.67 5.54 -343.44 -1.90 -40.58 16 20 C -0.33 -18.66 9.99 84.03 0.84 -17.82 16 21 H 0.07 3.86 7.83 -2.91 -0.02 3.83 16 22 C -0.11 -6.16 5.50 84.86 0.47 -5.69 16 23 N -0.98 -62.41 13.70 21.65 0.30 -62.11 16 24 Si 1.13 52.06 29.92 68.60 2.05 54.11 16 25 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 26 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 27 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 28 C 0.09 2.15 3.79 87.26 0.33 2.48 16 29 H 0.06 1.06 7.02 -2.39 -0.02 1.04 16 30 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.06 1.08 5.03 -2.39 -0.01 1.06 16 32 H 0.07 1.13 4.59 -2.39 -0.01 1.12 16 33 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.06 1.06 7.89 -2.38 -0.02 1.04 16 35 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.08 1.11 8.06 -2.39 -0.02 1.09 16 37 H 0.08 1.22 4.33 -2.39 -0.01 1.21 16 38 H 0.06 1.29 5.09 -2.39 -0.01 1.27 16 39 H 0.07 1.24 8.01 -2.39 -0.02 1.22 16 40 H 0.05 1.40 6.71 -2.39 -0.02 1.38 16 41 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.09 1.98 5.31 -2.38 -0.01 1.97 16 43 H 0.07 1.95 3.86 -2.39 -0.01 1.94 16 44 H 0.09 1.47 8.14 -2.38 -0.02 1.46 16 45 H 0.08 1.91 6.94 -2.39 -0.02 1.89 16 46 H 0.08 1.71 8.01 -2.39 -0.02 1.69 16 47 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 48 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 49 H 0.03 1.03 7.40 -2.39 -0.02 1.01 16 50 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 51 H 0.05 1.80 7.65 -2.39 -0.02 1.78 16 52 H 0.36 19.84 6.49 -92.71 -0.60 19.24 16 53 H 0.24 15.58 6.77 -92.70 -0.63 14.96 16 54 H 0.10 2.19 8.11 -2.39 -0.02 2.17 16 55 H 0.11 2.41 4.33 -2.39 -0.01 2.40 16 Total: -1.00 -72.73 393.56 4.44 -68.29 By element: Atomic # 1 Polarization: 39.82 SS G_CDS: 0.44 Total: 40.26 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: 6.49 Total: -9.39 kcal Atomic # 7 Polarization: -115.88 SS G_CDS: -3.40 Total: -119.28 kcal Atomic # 8 Polarization: -32.85 SS G_CDS: -1.15 Total: -34.00 kcal Atomic # 14 Polarization: 52.06 SS G_CDS: 2.05 Total: 54.11 kcal Total: -72.73 4.44 -68.29 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202244015.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.936 kcal (2) G-P(sol) polarization free energy of solvation -72.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds