Wall clock time and date at job start Tue Mar 31 2020 21:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 120.00172 * 2 1 4 4 H 1.48499 * 109.47119 * 270.00505 * 3 2 1 5 5 H 1.48504 * 109.47026 * 30.00240 * 3 2 1 6 6 H 1.48500 * 109.47048 * 150.00080 * 3 2 1 7 7 C 1.38817 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99641 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99789 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99724 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47150 * 179.97438 * 10 9 7 12 12 C 1.53346 * 109.41904 * 295.13157 * 11 10 9 13 13 C 1.53195 * 109.14901 * 178.67276 * 12 11 10 14 14 N 1.46919 * 108.89273 * 54.57640 * 13 12 11 15 15 C 1.34778 * 120.63255 * 126.34238 * 14 13 12 16 16 O 1.21279 * 120.00169 * 359.97438 * 15 14 13 17 17 C 1.50698 * 120.00023 * 179.97438 * 15 14 13 18 18 C 1.53003 * 109.46931 * 180.02562 * 17 15 14 19 19 C 1.53000 * 109.47098 * 180.02562 * 18 17 15 20 20 C 1.52997 * 109.47379 * 179.97438 * 19 18 17 21 21 C 1.53175 * 109.54479 * 294.55803 * 20 19 18 22 22 C 1.53095 * 109.16560 * 183.15337 * 21 20 19 23 23 O 1.42896 * 109.41600 * 57.60409 * 22 21 20 24 24 C 1.42905 * 114.09853 * 298.84230 * 23 22 21 25 25 C 1.53090 * 109.41174 * 61.16181 * 24 23 22 26 26 C 1.46933 * 118.74003 * 306.32349 * 14 13 12 27 27 C 1.53034 * 109.46014 * 175.00023 * 11 10 9 28 28 H 0.97003 * 120.00052 * 359.97438 * 1 2 3 29 29 H 0.96999 * 120.00572 * 359.97438 * 9 7 2 30 30 H 1.09001 * 109.47353 * 60.00330 * 10 9 7 31 31 H 1.08997 * 109.47478 * 300.00087 * 10 9 7 32 32 H 1.09001 * 109.45799 * 55.03185 * 11 10 9 33 33 H 1.08997 * 109.68637 * 58.70485 * 12 11 10 34 34 H 1.09002 * 109.47277 * 298.50741 * 12 11 10 35 35 H 1.09002 * 109.58720 * 294.71670 * 13 12 11 36 36 H 1.08996 * 109.58651 * 174.43567 * 13 12 11 37 37 H 1.09001 * 109.47488 * 299.99559 * 17 15 14 38 38 H 1.09001 * 109.47269 * 59.99982 * 17 15 14 39 39 H 1.08996 * 109.47074 * 299.99864 * 18 17 15 40 40 H 1.09001 * 109.47188 * 59.99897 * 18 17 15 41 41 H 1.09005 * 109.47553 * 300.00005 * 19 18 17 42 42 H 1.09001 * 109.47240 * 59.99862 * 19 18 17 43 43 H 1.09010 * 109.54233 * 54.82107 * 20 19 18 44 44 H 1.09006 * 109.52178 * 303.05353 * 21 20 19 45 45 H 1.08998 * 109.52469 * 63.24018 * 21 20 19 46 46 H 1.09001 * 109.47550 * 297.62172 * 22 21 20 47 47 H 1.09003 * 109.47978 * 177.59154 * 22 21 20 48 48 H 1.08998 * 109.48275 * 301.17483 * 24 23 22 49 49 H 1.09000 * 109.49086 * 181.15059 * 24 23 22 50 50 H 1.09004 * 109.52238 * 182.48839 * 25 24 23 51 51 H 1.08997 * 109.52463 * 62.29854 * 25 24 23 52 52 H 1.08994 * 109.58580 * 173.39910 * 26 14 13 53 53 H 1.09006 * 109.57831 * 293.67403 * 26 14 13 54 54 H 1.08994 * 109.50232 * 61.43679 * 27 11 10 55 55 H 1.09007 * 109.52628 * 301.35340 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 1.0637 -4.8197 -0.0008 12 6 0.2671 -4.8084 1.3095 13 6 -0.7489 -5.9548 1.2897 14 7 -0.0404 -7.2139 1.0233 15 6 -0.1813 -8.2693 1.8495 16 8 -0.8980 -8.1850 2.8242 17 6 0.5517 -9.5543 1.5623 18 6 0.2200 -10.5836 2.6447 19 6 0.9647 -11.8880 2.3534 20 6 0.6335 -12.9171 3.4360 21 6 1.1854 -12.4396 4.7828 22 6 0.9187 -13.5109 5.8435 23 8 1.5182 -14.7424 5.4361 24 6 1.0071 -15.2615 4.2066 25 6 1.2775 -14.2606 3.0802 26 6 0.8244 -7.3009 -0.1614 27 6 1.8249 -6.1413 -0.1277 28 1 -0.4850 0.8401 0.0004 29 1 0.3555 -2.3881 0.0002 30 1 2.6853 -3.7150 0.8878 31 1 2.6840 -3.7142 -0.8921 32 1 0.3791 -4.7128 -0.8422 33 1 -0.2578 -3.8587 1.4118 34 1 0.9483 -4.9405 2.1501 35 1 -1.4853 -5.7769 0.5060 36 1 -1.2506 -6.0151 2.2555 37 1 0.2442 -9.9385 0.5897 38 1 1.6254 -9.3665 1.5558 39 1 0.5272 -10.1997 3.6174 40 1 -0.8537 -10.7713 2.6507 41 1 0.6580 -12.2722 1.3805 42 1 2.0384 -11.6999 2.3476 43 1 -0.4476 -13.0380 3.5057 44 1 2.2590 -12.2710 4.6974 45 1 0.6918 -11.5114 5.0704 46 1 -0.1564 -13.6500 5.9572 47 1 1.3472 -13.1952 6.7948 48 1 -0.0668 -15.4236 4.2989 49 1 1.4991 -16.2071 3.9786 50 1 0.8495 -14.6346 2.1501 51 1 2.3528 -14.1288 2.9604 52 1 1.3629 -8.2485 -0.1519 53 1 0.2160 -7.2354 -1.0634 54 1 2.4915 -6.2607 0.7263 55 1 2.4093 -6.1382 -1.0479 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205424504.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:23 Heat of formation + Delta-G solvation = -127.686287 kcal Electronic energy + Delta-G solvation = -29366.595997 eV Core-core repulsion = 25401.241419 eV Total energy + Delta-G solvation = -3965.354579 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.27231 -40.36078 -38.97066 -36.83305 -36.52891 -34.49882 -33.69828 -32.22739 -32.10022 -31.92811 -29.12084 -27.99570 -25.66637 -25.18504 -24.45978 -23.88035 -23.24555 -22.14632 -21.25057 -20.91850 -19.86605 -19.14046 -18.01718 -17.17009 -17.02904 -16.84862 -16.75882 -16.64861 -15.97883 -15.65700 -15.52466 -15.43486 -15.33175 -15.12737 -14.80406 -14.72748 -14.33036 -14.12786 -13.90668 -13.77340 -13.46338 -13.27556 -13.12437 -12.94666 -12.76174 -12.72084 -12.66138 -12.41293 -12.21009 -12.19371 -12.12966 -11.96936 -11.80395 -11.67575 -11.59130 -11.41143 -11.37974 -11.15537 -11.12335 -10.92699 -10.74095 -10.38716 -9.63515 -8.98876 -7.95719 -5.23901 1.46390 1.48064 1.56465 1.66107 2.04742 2.55561 2.99303 3.37805 3.50625 3.72799 3.77481 3.79016 3.86960 3.89354 3.96328 4.10926 4.11464 4.17336 4.22351 4.30382 4.33227 4.33982 4.42846 4.52759 4.53480 4.63016 4.68131 4.72318 4.72930 4.75911 4.79224 4.82303 4.86903 4.89827 4.96124 4.98161 5.01625 5.05005 5.11219 5.11949 5.15576 5.16940 5.21566 5.29988 5.32480 5.46633 5.47325 5.54353 5.55149 5.61070 6.26878 6.28715 6.47937 7.20459 7.33238 8.10747 8.33356 9.27739 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.028171 B = 0.001571 C = 0.001563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.706497 B =17821.435743 C =17910.919009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.076 4.076 3 Si 0.973 3.027 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.271 1.271 7 C -0.247 4.247 8 H 0.074 0.926 9 N -0.744 5.744 10 C 0.156 3.844 11 C -0.084 4.084 12 C -0.114 4.114 13 C 0.117 3.883 14 N -0.611 5.611 15 C 0.504 3.496 16 O -0.595 6.595 17 C -0.131 4.131 18 C -0.101 4.101 19 C -0.104 4.104 20 C -0.091 4.091 21 C -0.152 4.152 22 C 0.056 3.944 23 O -0.408 6.408 24 C 0.052 3.948 25 C -0.146 4.146 26 C 0.108 3.892 27 C -0.120 4.120 28 H 0.251 0.749 29 H 0.374 0.626 30 H 0.012 0.988 31 H 0.025 0.975 32 H 0.068 0.932 33 H 0.054 0.946 34 H 0.050 0.950 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.121 0.879 38 H 0.115 0.885 39 H 0.052 0.948 40 H 0.053 0.947 41 H 0.080 0.920 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.072 0.928 46 H 0.052 0.948 47 H 0.096 0.904 48 H 0.053 0.947 49 H 0.103 0.897 50 H 0.089 0.911 51 H 0.069 0.931 52 H 0.121 0.879 53 H 0.083 0.917 54 H 0.066 0.934 55 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.844 -33.351 1.951 33.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.268 4.268 3 Si 0.802 3.198 4 H -0.212 1.212 5 H -0.223 1.223 6 H -0.196 1.196 7 C -0.379 4.379 8 H 0.092 0.908 9 N -0.387 5.387 10 C 0.029 3.971 11 C -0.103 4.103 12 C -0.153 4.153 13 C -0.006 4.006 14 N -0.343 5.343 15 C 0.295 3.705 16 O -0.476 6.476 17 C -0.171 4.171 18 C -0.139 4.139 19 C -0.141 4.141 20 C -0.109 4.109 21 C -0.189 4.189 22 C -0.021 4.021 23 O -0.327 6.327 24 C -0.024 4.024 25 C -0.184 4.184 26 C -0.014 4.014 27 C -0.158 4.158 28 H 0.059 0.941 29 H 0.206 0.794 30 H 0.030 0.970 31 H 0.043 0.957 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.139 0.861 38 H 0.133 0.867 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.099 0.901 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.090 0.910 46 H 0.071 0.929 47 H 0.114 0.886 48 H 0.071 0.929 49 H 0.121 0.879 50 H 0.107 0.893 51 H 0.088 0.912 52 H 0.139 0.861 53 H 0.102 0.898 54 H 0.084 0.916 55 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.786 -33.306 2.556 33.520 hybrid contribution -0.481 1.914 0.181 1.982 sum 2.305 -31.392 2.737 31.595 Atomic orbital electron populations 1.69814 1.06580 1.26021 1.59545 1.25558 0.96401 1.01077 1.03753 0.85146 0.77648 0.79506 0.77494 1.21213 1.22280 1.19576 1.19650 0.91497 0.85548 1.41166 0.90786 1.42594 1.05638 1.01196 1.89302 1.20861 0.93908 0.84926 0.97375 1.21271 0.97019 0.94934 0.97116 1.21803 0.97999 0.97566 0.97892 1.21431 0.94285 0.83027 1.01869 1.48323 1.46878 1.12161 1.26957 1.21572 0.81284 0.86315 0.81372 1.90664 1.42140 1.84361 1.30405 1.21781 1.02012 0.90679 1.02589 1.21329 1.00361 0.94442 0.97804 1.21569 1.00617 0.93153 0.98773 1.21210 0.99948 0.95082 0.94665 1.22274 1.01970 0.98910 0.95771 1.22672 0.97726 0.83767 0.97898 1.87897 1.64976 1.39117 1.40721 1.22760 0.98964 0.97237 0.83448 1.22216 1.01837 0.94999 0.99299 1.22029 0.92066 1.00417 0.86877 1.21879 0.97804 0.92378 1.03786 0.94053 0.79374 0.97023 0.95687 0.91312 0.92728 0.93097 0.90903 0.91201 0.86131 0.86685 0.92934 0.92864 0.90119 0.91028 0.91392 0.91390 0.90990 0.92948 0.88583 0.92856 0.87906 0.89273 0.91230 0.86054 0.89841 0.91572 0.88415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.67 13.06 21.65 0.28 -59.39 16 2 C -0.08 -4.38 5.50 84.86 0.47 -3.91 16 3 Si 0.97 46.43 29.55 68.60 2.03 48.46 16 4 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 5 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 6 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.25 -13.90 9.99 84.04 0.84 -13.06 16 8 H 0.07 4.01 7.83 -2.91 -0.02 3.98 16 9 N -0.74 -37.80 5.32 -343.45 -1.83 -39.62 16 10 C 0.16 6.04 5.65 86.38 0.49 6.53 16 11 C -0.08 -2.50 2.19 -10.66 -0.02 -2.52 16 12 C -0.11 -3.65 5.27 30.78 0.16 -3.49 16 13 C 0.12 3.27 6.42 86.36 0.55 3.83 16 14 N -0.61 -13.68 2.97 -818.91 -2.43 -16.12 16 15 C 0.50 11.85 7.70 87.66 0.67 12.53 16 16 O -0.59 -19.60 15.39 -3.03 -0.05 -19.64 16 17 C -0.13 -1.71 4.05 29.85 0.12 -1.59 16 18 C -0.10 -1.48 4.27 30.60 0.13 -1.35 16 19 C -0.10 -0.98 4.69 30.59 0.14 -0.83 16 20 C -0.09 -0.99 2.27 -10.68 -0.02 -1.01 16 21 C -0.15 -1.99 5.10 30.68 0.16 -1.84 16 22 C 0.06 0.77 6.84 72.01 0.49 1.27 16 23 O -0.41 -6.80 10.77 -148.98 -1.60 -8.40 16 24 C 0.05 0.58 6.84 72.01 0.49 1.07 16 25 C -0.15 -1.34 5.42 30.68 0.17 -1.17 16 26 C 0.11 1.62 6.34 86.36 0.55 2.17 16 27 C -0.12 -2.36 5.36 30.67 0.16 -2.19 16 28 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 29 H 0.37 20.17 6.85 -92.71 -0.63 19.53 16 30 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.05 2.09 7.16 -2.39 -0.02 2.07 16 34 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.07 2.22 7.00 -2.39 -0.02 2.21 16 37 H 0.12 0.93 7.94 -2.39 -0.02 0.91 16 38 H 0.12 1.05 7.69 -2.39 -0.02 1.03 16 39 H 0.05 0.97 6.61 -2.39 -0.02 0.96 16 40 H 0.05 0.94 8.10 -2.39 -0.02 0.92 16 41 H 0.08 0.54 8.14 -2.38 -0.02 0.52 16 42 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 44 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 45 H 0.07 1.04 6.75 -2.39 -0.02 1.02 16 46 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 47 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 48 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 49 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 50 H 0.09 0.54 8.14 -2.38 -0.02 0.52 16 51 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 52 H 0.12 0.95 5.93 -2.39 -0.01 0.93 16 53 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 54 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 55 H 0.10 1.57 8.14 -2.38 -0.02 1.56 16 Total: -1.00 -74.11 419.04 2.16 -71.96 By element: Atomic # 1 Polarization: 28.14 SS G_CDS: 0.21 Total: 28.35 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: 5.55 Total: -5.58 kcal Atomic # 7 Polarization: -111.15 SS G_CDS: -3.98 Total: -115.13 kcal Atomic # 8 Polarization: -26.40 SS G_CDS: -1.65 Total: -28.05 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -74.11 2.16 -71.96 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205424504.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.730 kcal (2) G-P(sol) polarization free energy of solvation -74.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds