Wall clock time and date at job start Tue Mar 31 2020 20:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 119.99892 * 2 1 4 4 H 1.48499 * 109.47268 * 270.00180 * 3 2 1 5 5 H 1.48506 * 109.47041 * 30.00460 * 3 2 1 6 6 H 1.48497 * 109.46702 * 150.00118 * 3 2 1 7 7 C 1.38806 * 120.00101 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00075 * 359.97438 * 7 2 1 9 9 N 1.36936 * 120.00080 * 180.02562 * 7 2 1 10 10 C 1.46510 * 119.99911 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.46680 * 34.99920 * 10 9 7 12 12 C 1.52997 * 109.47071 * 274.99622 * 10 9 7 13 13 C 1.52999 * 109.46991 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.46626 * 60.00378 * 13 12 10 15 15 C 1.52997 * 109.47127 * 299.99539 * 14 13 12 16 16 C 1.52996 * 109.46858 * 154.99804 * 10 9 7 17 17 H 1.08996 * 109.47452 * 59.99781 * 16 10 9 18 18 N 1.46507 * 109.47258 * 299.99700 * 16 10 9 19 19 C 1.34777 * 119.99971 * 154.99970 * 18 16 10 20 20 O 1.21284 * 119.99852 * 0.02562 * 19 18 16 21 21 C 1.50703 * 119.99960 * 180.02562 * 19 18 16 22 22 C 1.52993 * 109.46859 * 180.02562 * 21 19 18 23 23 C 1.53001 * 109.47107 * 179.97438 * 22 21 19 24 24 C 1.52995 * 109.47592 * 179.97438 * 23 22 21 25 25 C 1.53179 * 109.54439 * 294.56244 * 24 23 22 26 26 C 1.53095 * 109.16325 * 183.15065 * 25 24 23 27 27 O 1.42898 * 109.41521 * 57.60932 * 26 25 24 28 28 C 1.42906 * 114.09453 * 298.83712 * 27 26 25 29 29 C 1.53096 * 109.41277 * 61.16319 * 28 27 26 30 30 H 0.96997 * 119.99816 * 359.97438 * 1 2 3 31 31 H 0.96994 * 120.00321 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.47153 * 60.00215 * 12 10 9 33 33 H 1.08993 * 109.47194 * 300.00503 * 12 10 9 34 34 H 1.08993 * 109.47839 * 300.00447 * 13 12 10 35 35 H 1.09000 * 109.47160 * 180.02562 * 13 12 10 36 36 H 1.09001 * 109.46801 * 59.99811 * 14 13 12 37 37 H 1.09001 * 109.46998 * 179.97438 * 14 13 12 38 38 H 1.09002 * 109.47153 * 180.02562 * 15 14 13 39 39 H 1.08996 * 109.46952 * 300.00302 * 15 14 13 40 40 H 0.96998 * 120.00008 * 335.00854 * 18 16 10 41 41 H 1.09002 * 109.46880 * 300.00159 * 21 19 18 42 42 H 1.08994 * 109.46960 * 59.99910 * 21 19 18 43 43 H 1.09002 * 109.47333 * 299.99672 * 22 21 19 44 44 H 1.09002 * 109.47232 * 60.00141 * 22 21 19 45 45 H 1.08995 * 109.47404 * 300.00315 * 23 22 21 46 46 H 1.09002 * 109.46692 * 60.00138 * 23 22 21 47 47 H 1.08999 * 109.54181 * 54.82518 * 24 23 22 48 48 H 1.09008 * 109.52120 * 303.05421 * 25 24 23 49 49 H 1.08997 * 109.52727 * 63.24147 * 25 24 23 50 50 H 1.09000 * 109.47646 * 297.61940 * 26 25 24 51 51 H 1.09005 * 109.48053 * 177.59039 * 26 25 24 52 52 H 1.08997 * 109.48846 * 301.18013 * 28 27 26 53 53 H 1.09004 * 109.48100 * 181.14407 * 28 27 26 54 54 H 1.09004 * 109.51987 * 182.48221 * 29 28 27 55 55 H 1.09006 * 109.52160 * 62.29526 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6527 0.7002 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3797 -1.2021 0.0000 10 6 4.1122 -2.4709 0.0000 11 1 3.5650 -3.2063 -0.5898 12 6 4.2578 -2.9757 1.4369 13 6 5.0222 -4.3010 1.4369 14 6 6.4097 -4.0894 0.8275 15 6 6.2641 -3.5846 -0.6094 16 6 5.4996 -2.2587 -0.6091 17 1 6.0467 -1.5233 -0.0194 18 7 5.3601 -1.7754 -1.9851 19 6 6.3496 -1.0554 -2.5499 20 8 7.3557 -0.8081 -1.9193 21 6 6.2060 -0.5577 -3.9651 22 6 7.4598 0.2248 -4.3602 23 6 7.3143 0.7296 -5.7972 24 6 8.5679 1.5127 -6.1922 25 6 8.6713 2.7795 -5.3373 26 6 9.8839 3.5956 -5.7927 27 8 9.7525 3.9072 -7.1810 28 6 9.6989 2.7616 -8.0336 29 6 8.4788 1.9120 -7.6683 30 1 -0.4850 0.8400 0.0004 31 1 3.8647 -0.3621 0.0004 32 1 3.2694 -3.1268 1.8709 33 1 4.8049 -2.2403 2.0267 34 1 4.4748 -5.0363 0.8472 35 1 5.1256 -4.6609 2.4605 36 1 6.9571 -3.3541 1.4173 37 1 6.9545 -5.0334 0.8279 38 1 7.2525 -3.4342 -1.0436 39 1 5.7166 -4.3198 -1.1990 40 1 4.5557 -1.9734 -2.4895 41 1 6.0807 -1.4063 -4.6377 42 1 5.3342 0.0928 -4.0347 43 1 7.5855 1.0734 -3.6877 44 1 8.3314 -0.4261 -4.2907 45 1 7.1888 -0.1191 -6.4695 46 1 6.4427 1.3805 -5.8671 47 1 9.4501 0.8922 -6.0349 48 1 7.7659 3.3747 -5.4570 49 1 8.7907 2.5033 -4.2897 50 1 10.7928 3.0149 -5.6347 51 1 9.9378 4.5192 -5.2163 52 1 10.6053 2.1700 -7.9051 53 1 9.6195 3.0844 -9.0717 54 1 8.4607 1.0154 -8.2878 55 1 7.5696 2.4897 -7.8351 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226657323.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:57 Heat of formation + Delta-G solvation = -136.693487 kcal Electronic energy + Delta-G solvation = -30236.359361 eV Core-core repulsion = 26270.614201 eV Total energy + Delta-G solvation = -3965.745160 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.14129 -40.39250 -39.31246 -36.82574 -35.94448 -35.07652 -33.63605 -33.33526 -32.01210 -30.82452 -29.92061 -28.55240 -25.44462 -25.12111 -24.44726 -23.36708 -22.48625 -22.03941 -21.34246 -20.97430 -20.70048 -19.66667 -17.93280 -17.33618 -17.08032 -16.99336 -16.81729 -16.67751 -16.02417 -15.84303 -15.53528 -15.28301 -15.05389 -14.90023 -14.72457 -14.68709 -14.55080 -14.42381 -13.85116 -13.71645 -13.67198 -13.27742 -13.08848 -12.95698 -12.77606 -12.69884 -12.45898 -12.39356 -12.22907 -12.17817 -12.09112 -11.84950 -11.83678 -11.72486 -11.62582 -11.49663 -11.19244 -11.16837 -11.14032 -11.03218 -10.71509 -10.40472 -9.94377 -9.31822 -8.02944 -5.34788 1.33682 1.36018 1.42010 1.71111 2.30076 2.44992 2.97435 3.28629 3.45167 3.64229 3.73697 3.75316 3.83923 3.94668 4.08030 4.10363 4.14068 4.18290 4.23859 4.24855 4.31209 4.40092 4.44419 4.50418 4.51051 4.56593 4.65583 4.66468 4.70349 4.74258 4.77212 4.84009 4.92603 4.93766 4.98815 5.01262 5.06575 5.12962 5.16217 5.18668 5.21597 5.26630 5.28676 5.29574 5.42689 5.45330 5.51233 5.54294 5.66996 5.78137 6.21279 6.26782 6.64394 7.06161 7.32273 7.82525 8.00724 9.18473 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010692 B = 0.002641 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2618.190174 B =10598.514947 C =12440.697284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.056 4.056 3 Si 0.942 3.058 4 H -0.277 1.277 5 H -0.299 1.299 6 H -0.269 1.269 7 C -0.216 4.216 8 H 0.065 0.935 9 N -0.748 5.748 10 C 0.175 3.825 11 H 0.060 0.940 12 C -0.130 4.130 13 C -0.111 4.111 14 C -0.111 4.111 15 C -0.114 4.114 16 C 0.145 3.855 17 H 0.058 0.942 18 N -0.713 5.713 19 C 0.506 3.494 20 O -0.587 6.587 21 C -0.138 4.138 22 C -0.097 4.097 23 C -0.107 4.107 24 C -0.088 4.088 25 C -0.154 4.154 26 C 0.058 3.942 27 O -0.408 6.408 28 C 0.054 3.946 29 C -0.147 4.147 30 H 0.256 0.744 31 H 0.359 0.641 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.055 0.945 37 H 0.086 0.914 38 H 0.059 0.941 39 H 0.077 0.923 40 H 0.410 0.590 41 H 0.119 0.881 42 H 0.098 0.902 43 H 0.051 0.949 44 H 0.062 0.938 45 H 0.080 0.920 46 H 0.062 0.938 47 H 0.074 0.926 48 H 0.061 0.939 49 H 0.072 0.928 50 H 0.057 0.943 51 H 0.096 0.904 52 H 0.057 0.943 53 H 0.103 0.897 54 H 0.090 0.910 55 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.594 -3.497 -13.828 25.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.248 4.248 3 Si 0.772 3.228 4 H -0.203 1.203 5 H -0.226 1.226 6 H -0.194 1.194 7 C -0.347 4.347 8 H 0.083 0.917 9 N -0.390 5.390 10 C 0.067 3.933 11 H 0.078 0.922 12 C -0.171 4.171 13 C -0.149 4.149 14 C -0.149 4.149 15 C -0.153 4.153 16 C 0.039 3.961 17 H 0.076 0.924 18 N -0.363 5.363 19 C 0.294 3.706 20 O -0.468 6.468 21 C -0.177 4.177 22 C -0.135 4.135 23 C -0.144 4.144 24 C -0.106 4.106 25 C -0.192 4.192 26 C -0.019 4.019 27 O -0.327 6.327 28 C -0.022 4.022 29 C -0.185 4.185 30 H 0.065 0.935 31 H 0.192 0.808 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.074 0.926 37 H 0.104 0.896 38 H 0.078 0.922 39 H 0.096 0.904 40 H 0.246 0.754 41 H 0.137 0.863 42 H 0.116 0.884 43 H 0.070 0.930 44 H 0.080 0.920 45 H 0.099 0.901 46 H 0.080 0.920 47 H 0.092 0.908 48 H 0.080 0.920 49 H 0.091 0.909 50 H 0.075 0.925 51 H 0.114 0.886 52 H 0.076 0.924 53 H 0.121 0.879 54 H 0.108 0.892 55 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 21.063 -3.214 -13.467 25.206 hybrid contribution -0.598 1.107 0.427 1.329 sum 20.464 -2.107 -13.039 24.357 Atomic orbital electron populations 1.69847 1.06772 1.26345 1.60175 1.25283 0.95810 1.00343 1.03323 0.85605 0.78114 0.81107 0.78003 1.20339 1.22611 1.19413 1.18988 0.82195 0.93356 1.40114 0.91670 1.42814 1.02530 1.03524 1.90148 1.20658 0.90027 0.87497 0.95121 0.92153 1.22073 0.99768 0.97573 0.97647 1.21512 0.95567 0.96165 1.01616 1.21482 0.97050 1.01709 0.94627 1.21794 0.99761 0.95362 0.98347 1.21164 0.95969 0.96364 0.82590 0.92384 1.46073 1.20790 1.54433 1.14979 1.21329 0.82295 0.76832 0.90114 1.90643 1.31171 1.59173 1.65802 1.21750 1.01393 1.02763 0.91815 1.21291 0.96321 0.99194 0.96691 1.21588 0.97499 1.00061 0.95258 1.21191 0.98902 0.95741 0.94813 1.22291 0.99282 0.97151 1.00426 1.22659 0.96958 1.00440 0.81801 1.87896 1.94507 1.32702 1.17601 1.22757 0.97385 0.87336 0.94769 1.22229 0.99147 1.00941 0.96169 0.93471 0.80846 0.93455 0.93394 0.91216 0.90865 0.92602 0.89569 0.92205 0.90434 0.75444 0.86273 0.88418 0.93048 0.91959 0.90109 0.91968 0.90763 0.91982 0.90944 0.92486 0.88606 0.92448 0.87853 0.89173 0.91712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.36 13.97 21.65 0.30 -61.05 16 2 C -0.06 -3.21 5.50 84.86 0.47 -2.74 16 3 Si 0.94 45.86 27.74 68.60 1.90 47.76 16 4 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 5 H -0.30 -14.88 7.11 99.48 0.71 -14.17 16 6 H -0.27 -12.47 6.52 99.48 0.65 -11.82 16 7 C -0.22 -11.62 10.41 84.03 0.87 -10.75 16 8 H 0.07 3.81 8.06 -2.91 -0.02 3.79 16 9 N -0.75 -33.21 4.76 -322.93 -1.54 -34.75 16 10 C 0.18 6.13 2.29 44.99 0.10 6.24 16 11 H 0.06 2.12 8.08 -2.39 -0.02 2.11 16 12 C -0.13 -4.23 5.50 30.59 0.17 -4.06 16 13 C -0.11 -2.63 5.92 30.60 0.18 -2.45 16 14 C -0.11 -2.42 5.92 30.60 0.18 -2.24 16 15 C -0.11 -2.78 5.50 30.61 0.17 -2.61 16 16 C 0.14 4.44 1.98 45.00 0.09 4.53 16 17 H 0.06 2.09 7.58 -2.39 -0.02 2.07 16 18 N -0.71 -20.37 4.91 -442.44 -2.17 -22.54 16 19 C 0.51 14.63 7.79 87.66 0.68 15.31 16 20 O -0.59 -21.04 15.65 -3.04 -0.05 -21.09 16 21 C -0.14 -2.84 5.70 29.85 0.17 -2.67 16 22 C -0.10 -1.94 4.27 30.59 0.13 -1.81 16 23 C -0.11 -1.63 4.69 30.59 0.14 -1.48 16 24 C -0.09 -1.32 2.27 -10.68 -0.02 -1.34 16 25 C -0.15 -2.67 5.10 30.69 0.16 -2.51 16 26 C 0.06 0.97 6.84 72.01 0.49 1.46 16 27 O -0.41 -7.94 10.77 -148.98 -1.60 -9.54 16 28 C 0.05 0.74 6.84 72.01 0.49 1.23 16 29 C -0.15 -1.91 5.42 30.68 0.17 -1.75 16 30 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 31 H 0.36 16.35 5.66 -92.71 -0.52 15.83 16 32 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.07 1.54 8.14 -2.39 -0.02 1.53 16 36 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.41 10.82 8.60 -92.71 -0.80 10.02 16 41 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.05 1.23 6.62 -2.39 -0.02 1.22 16 44 H 0.06 1.32 8.10 -2.39 -0.02 1.30 16 45 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 48 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 49 H 0.07 1.34 6.75 -2.39 -0.02 1.32 16 50 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 51 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 52 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 53 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 54 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 55 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 Total: -1.00 -69.73 421.07 0.96 -68.77 By element: Atomic # 1 Polarization: 40.61 SS G_CDS: -0.53 Total: 40.08 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: 4.64 Total: -7.64 kcal Atomic # 7 Polarization: -114.94 SS G_CDS: -3.41 Total: -118.34 kcal Atomic # 8 Polarization: -28.98 SS G_CDS: -1.65 Total: -30.63 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 1.90 Total: 47.76 kcal Total: -69.73 0.96 -68.77 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226657323.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.923 kcal (2) G-P(sol) polarization free energy of solvation -69.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds