Wall clock time and date at job start Tue Mar 31 2020 22:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 110.75178 * 2 1 4 4 C 1.54385 * 110.84594 * 123.46964 * 2 1 3 5 5 O 1.43234 * 107.58928 * 139.54731 * 4 2 1 6 6 C 1.43642 * 109.97172 * 1.71268 * 5 4 2 7 7 H 1.08998 * 110.30775 * 94.58359 * 6 5 4 8 8 C 1.52998 * 110.31051 * 216.65537 * 6 5 4 9 9 C 1.52999 * 109.47241 * 293.54456 * 8 6 5 10 10 C 1.50696 * 109.47570 * 179.97438 * 9 8 6 11 11 O 1.21288 * 119.99684 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00531 * 180.02562 * 10 9 8 13 13 C 1.46501 * 119.99987 * 179.97438 * 12 10 9 14 14 H 1.08994 * 109.47152 * 35.00375 * 13 12 10 15 15 C 1.52996 * 109.47264 * 274.99912 * 13 12 10 16 16 C 1.52998 * 109.47048 * 180.02562 * 15 13 12 17 17 C 1.52998 * 109.47292 * 60.00174 * 16 15 13 18 18 C 1.52996 * 109.47270 * 300.00068 * 17 16 15 19 19 C 1.52998 * 109.47019 * 59.99765 * 18 17 16 20 20 H 1.09000 * 109.47516 * 59.99967 * 19 18 17 21 21 N 1.46506 * 109.47262 * 180.02562 * 19 18 17 22 22 C 1.36938 * 119.99589 * 275.00203 * 21 19 18 23 23 H 1.07999 * 120.00325 * 359.97438 * 22 21 19 24 24 C 1.38815 * 119.99817 * 180.02562 * 22 21 19 25 25 N 1.31621 * 119.99673 * 359.71804 * 24 22 21 26 26 Si 1.86795 * 120.00115 * 179.97438 * 24 22 21 27 27 H 1.48494 * 109.47071 * 359.97438 * 26 24 22 28 28 H 1.48506 * 109.47211 * 119.99797 * 26 24 22 29 29 H 1.48493 * 109.47327 * 239.99664 * 26 24 22 30 30 C 1.54939 * 105.13666 * 335.57272 * 6 5 4 31 31 H 1.09000 * 109.47531 * 297.98500 * 1 2 3 32 32 H 1.09007 * 109.47113 * 57.98597 * 1 2 3 33 33 H 1.09004 * 109.47353 * 177.98251 * 1 2 3 34 34 H 1.09005 * 109.46763 * 182.01182 * 3 2 1 35 35 H 1.08993 * 109.46943 * 302.01410 * 3 2 1 36 36 H 1.09007 * 109.46848 * 62.01575 * 3 2 1 37 37 H 1.08999 * 109.83298 * 20.03247 * 4 2 1 38 38 H 1.09002 * 109.83049 * 259.06236 * 4 2 1 39 39 H 1.08997 * 109.47455 * 173.54748 * 8 6 5 40 40 H 1.09000 * 109.47395 * 53.54584 * 8 6 5 41 41 H 1.09008 * 109.46997 * 60.00126 * 9 8 6 42 42 H 1.09004 * 109.47496 * 300.00496 * 9 8 6 43 43 H 0.96997 * 119.99964 * 0.02562 * 12 10 9 44 44 H 1.08994 * 109.47414 * 300.00303 * 15 13 12 45 45 H 1.09001 * 109.46909 * 60.00421 * 15 13 12 46 46 H 1.09002 * 109.47121 * 180.02562 * 16 15 13 47 47 H 1.09007 * 109.47327 * 300.00144 * 16 15 13 48 48 H 1.09002 * 109.47283 * 60.00068 * 17 16 15 49 49 H 1.08997 * 109.47162 * 179.97438 * 17 16 15 50 50 H 1.09002 * 109.46968 * 300.00193 * 18 17 16 51 51 H 1.09001 * 109.47247 * 179.97438 * 18 17 16 52 52 H 0.96999 * 120.00080 * 94.99693 * 21 19 18 53 53 H 0.97000 * 120.00043 * 180.02562 * 25 24 22 54 54 H 1.08997 * 111.12769 * 154.36471 * 30 6 5 55 55 H 1.09005 * 111.12717 * 278.52490 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0720 1.4307 0.0000 4 6 2.0793 -0.7957 1.2035 5 8 3.2043 -1.5539 0.7440 6 6 3.4464 -1.2796 -0.6451 7 1 4.1947 -0.4943 -0.7508 8 6 3.9050 -2.5494 -1.3650 9 6 5.2765 -2.9700 -0.8333 10 6 5.7280 -4.2210 -1.5419 11 8 5.0224 -4.7262 -2.3892 12 7 6.9158 -4.7785 -1.2342 13 6 7.3544 -5.9950 -1.9227 14 1 7.0134 -5.9697 -2.9576 15 6 6.7637 -7.2195 -1.2209 16 6 7.2222 -8.4899 -1.9396 17 6 8.7497 -8.5711 -1.9073 18 6 9.3405 -7.3466 -2.6091 19 6 8.8819 -6.0762 -1.8903 20 1 9.2225 -6.1012 -0.8552 21 7 9.4471 -4.9037 -2.5627 22 6 10.7069 -4.4723 -2.2432 23 1 11.2836 -4.9962 -1.4953 24 6 11.2423 -3.3610 -2.8798 25 7 10.5412 -2.7253 -3.7945 26 14 12.9604 -2.7721 -2.4435 27 1 13.5355 -3.6550 -1.3972 28 1 13.8200 -2.8131 -3.6538 29 1 12.8915 -1.3796 -1.9324 30 6 2.0828 -0.8053 -1.2074 31 1 -0.3634 0.4822 0.9075 32 1 -0.3634 0.5448 -0.8714 33 1 -0.3634 -1.0270 -0.0362 34 1 3.1612 1.4065 -0.0361 35 1 1.6913 1.9635 -0.8713 36 1 1.7498 1.9413 0.9076 37 1 1.3107 -1.4683 1.5841 38 1 2.3927 -0.1083 1.9893 39 1 3.9742 -2.3554 -2.4353 40 1 3.1854 -3.3484 -1.1864 41 1 5.2074 -3.1641 0.2371 42 1 5.9962 -2.1710 -1.0119 43 1 7.4800 -4.3748 -0.5563 44 1 7.1046 -7.2448 -0.1859 45 1 5.6754 -7.1614 -1.2435 46 1 6.8010 -9.3622 -1.4398 47 1 6.8815 -8.4648 -2.9748 48 1 9.0904 -8.5962 -0.8722 49 1 9.0763 -9.4764 -2.4189 50 1 8.9997 -7.3216 -3.6442 51 1 10.4287 -7.4043 -2.5857 52 1 8.9290 -4.4330 -3.2342 53 1 10.9154 -1.9490 -4.2397 54 1 2.2186 -0.1639 -2.0782 55 1 1.4386 -1.6525 -1.4426 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229933124.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:47 Heat of formation + Delta-G solvation = -130.521503 kcal Electronic energy + Delta-G solvation = -30409.867130 eV Core-core repulsion = 26444.389607 eV Total energy + Delta-G solvation = -3965.477523 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.21494 -40.78383 -39.21093 -35.82312 -35.70089 -35.04453 -34.43200 -32.98928 -31.04744 -30.05559 -29.11426 -28.25990 -27.03621 -25.74076 -25.35043 -23.27954 -22.48979 -21.93190 -21.33773 -20.69420 -20.16266 -19.14775 -17.98424 -17.61833 -17.30801 -16.71065 -16.46963 -16.34307 -15.73212 -15.60554 -15.44194 -15.11043 -14.95857 -14.70705 -14.63336 -14.52277 -14.16198 -14.13799 -13.86646 -13.72604 -13.48419 -13.40645 -13.03021 -12.91769 -12.84372 -12.71789 -12.50192 -12.26161 -12.20131 -12.16845 -12.05658 -12.00857 -12.00066 -11.65203 -11.64324 -11.60045 -11.43692 -11.31326 -11.11267 -10.98108 -10.63986 -10.42483 -9.89183 -8.98742 -7.90856 -5.19606 1.48115 1.49017 1.58323 1.73794 2.33232 2.57149 2.86820 3.40097 3.42610 3.66090 3.70015 3.81116 3.85244 3.89146 4.01593 4.11377 4.14499 4.26236 4.27919 4.32714 4.33284 4.42137 4.44977 4.50468 4.57437 4.60119 4.70265 4.73350 4.75571 4.76301 4.82653 4.82855 4.95502 4.96562 4.99403 5.01879 5.05447 5.12997 5.18385 5.19183 5.24286 5.25854 5.29494 5.30922 5.31787 5.43797 5.47380 5.53785 5.59080 5.71785 6.11948 6.29154 6.66889 7.34757 7.35792 8.09427 8.33998 9.32382 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010228 B = 0.002694 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2736.824332 B =10390.623963 C =12542.299340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.097 4.097 3 C -0.138 4.138 4 C 0.052 3.948 5 O -0.398 6.398 6 C 0.083 3.917 7 H 0.073 0.927 8 C -0.092 4.092 9 C -0.129 4.129 10 C 0.509 3.491 11 O -0.589 6.589 12 N -0.708 5.708 13 C 0.148 3.852 14 H 0.050 0.950 15 C -0.114 4.114 16 C -0.110 4.110 17 C -0.109 4.109 18 C -0.128 4.128 19 C 0.172 3.828 20 H 0.057 0.943 21 N -0.731 5.731 22 C -0.229 4.229 23 H 0.079 0.921 24 C -0.075 4.075 25 N -0.969 5.969 26 Si 0.968 3.032 27 H -0.265 1.265 28 H -0.300 1.300 29 H -0.295 1.295 30 C -0.142 4.142 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.049 0.951 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.109 0.891 42 H 0.096 0.904 43 H 0.407 0.593 44 H 0.077 0.923 45 H 0.055 0.945 46 H 0.087 0.913 47 H 0.052 0.948 48 H 0.072 0.928 49 H 0.073 0.927 50 H 0.040 0.960 51 H 0.050 0.950 52 H 0.368 0.632 53 H 0.248 0.752 54 H 0.091 0.909 55 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.612 0.822 11.128 21.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.098 4.098 3 C -0.195 4.195 4 C -0.024 4.024 5 O -0.318 6.318 6 C 0.026 3.974 7 H 0.091 0.909 8 C -0.130 4.130 9 C -0.169 4.169 10 C 0.298 3.702 11 O -0.470 6.470 12 N -0.357 5.357 13 C 0.042 3.958 14 H 0.069 0.931 15 C -0.153 4.153 16 C -0.148 4.148 17 C -0.147 4.147 18 C -0.169 4.169 19 C 0.063 3.937 20 H 0.075 0.925 21 N -0.370 5.370 22 C -0.360 4.360 23 H 0.096 0.904 24 C -0.267 4.267 25 N -0.620 5.620 26 Si 0.798 3.202 27 H -0.189 1.189 28 H -0.228 1.228 29 H -0.223 1.223 30 C -0.179 4.179 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.127 0.873 42 H 0.115 0.885 43 H 0.243 0.757 44 H 0.096 0.904 45 H 0.074 0.926 46 H 0.105 0.895 47 H 0.071 0.929 48 H 0.090 0.910 49 H 0.092 0.908 50 H 0.058 0.942 51 H 0.069 0.931 52 H 0.200 0.800 53 H 0.057 0.943 54 H 0.110 0.890 55 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -18.800 0.337 10.770 21.669 hybrid contribution 1.199 1.061 -0.460 1.665 sum -17.602 1.398 10.311 20.447 Atomic orbital electron populations 1.21739 0.91991 1.02354 1.02956 1.22119 0.97536 0.96147 0.93948 1.21835 1.00703 0.94016 1.02991 1.23410 0.88179 0.94305 0.96492 1.88382 1.50150 1.67821 1.25478 1.22988 0.97385 0.95969 0.81054 0.90874 1.21379 0.95191 0.96990 0.99474 1.21595 0.98793 0.94634 1.01874 1.21190 0.80810 0.85966 0.82279 1.90625 1.55649 1.65566 1.35187 1.45969 1.19793 1.28023 1.41874 1.21125 0.94176 0.84640 0.95836 0.93147 1.21798 0.99819 0.93570 1.00158 1.21478 0.95829 0.97116 1.00421 1.21511 0.95048 0.97033 1.01145 1.22090 1.00067 0.95573 0.99165 1.20672 0.89965 0.87166 0.95874 0.92472 1.42581 1.15832 1.31525 1.47053 1.19607 0.92437 1.07510 1.16485 0.90358 1.25488 1.01943 0.99463 0.99836 1.69847 1.38794 1.22795 1.30575 0.85145 0.80310 0.77694 0.77041 1.18898 1.22789 1.22285 1.23406 0.95429 1.00428 0.98665 0.91287 0.91534 0.92416 0.93164 0.91419 0.91242 0.90931 0.90865 0.90921 0.91700 0.87280 0.88528 0.75732 0.90417 0.92624 0.89486 0.92906 0.90969 0.90824 0.94150 0.93141 0.80045 0.94340 0.89017 0.90265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.45 8.50 71.98 0.61 -0.84 16 2 C -0.10 -1.38 0.94 -50.92 -0.05 -1.43 16 3 C -0.14 -1.76 8.46 71.98 0.61 -1.15 16 4 C 0.05 0.90 6.99 72.45 0.51 1.40 16 5 O -0.40 -9.26 10.69 -148.98 -1.59 -10.85 16 6 C 0.08 1.79 3.14 31.26 0.10 1.89 16 7 H 0.07 1.56 7.77 -2.39 -0.02 1.54 16 8 C -0.09 -2.38 4.25 30.59 0.13 -2.25 16 9 C -0.13 -3.55 5.61 29.85 0.17 -3.38 16 10 C 0.51 17.63 7.79 87.66 0.68 18.31 16 11 O -0.59 -24.20 15.64 -3.05 -0.05 -24.24 16 12 N -0.71 -23.85 4.91 -442.53 -2.17 -26.02 16 13 C 0.15 5.17 1.98 44.99 0.09 5.25 16 14 H 0.05 2.10 7.58 -2.39 -0.02 2.08 16 15 C -0.11 -3.20 5.49 30.59 0.17 -3.03 16 16 C -0.11 -2.70 5.92 30.59 0.18 -2.52 16 17 C -0.11 -2.77 5.92 30.59 0.18 -2.59 16 18 C -0.13 -4.44 5.50 30.59 0.17 -4.27 16 19 C 0.17 6.52 2.29 44.99 0.10 6.62 16 20 H 0.06 2.11 8.08 -2.39 -0.02 2.09 16 21 N -0.73 -35.67 4.95 -322.92 -1.60 -37.27 16 22 C -0.23 -12.16 9.93 84.03 0.83 -11.33 16 23 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 24 C -0.08 -4.23 5.50 84.86 0.47 -3.76 16 25 N -0.97 -58.95 13.06 21.65 0.28 -58.67 16 26 Si 0.97 45.50 29.55 68.60 2.03 47.53 16 27 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 28 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 29 H -0.30 -13.92 7.11 99.48 0.71 -13.22 16 30 C -0.14 -2.43 5.53 32.05 0.18 -2.25 16 31 H 0.07 0.61 8.14 -2.39 -0.02 0.60 16 32 H 0.07 0.65 8.14 -2.38 -0.02 0.64 16 33 H 0.06 0.66 8.12 -2.39 -0.02 0.64 16 34 H 0.05 0.75 7.53 -2.38 -0.02 0.73 16 35 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 37 H 0.07 1.14 7.81 -2.39 -0.02 1.12 16 38 H 0.07 1.13 7.84 -2.39 -0.02 1.11 16 39 H 0.07 2.00 8.10 -2.39 -0.02 1.98 16 40 H 0.06 1.79 8.10 -2.39 -0.02 1.77 16 41 H 0.11 2.69 7.91 -2.38 -0.02 2.67 16 42 H 0.10 2.61 8.14 -2.38 -0.02 2.59 16 43 H 0.41 12.89 8.60 -92.71 -0.80 12.09 16 44 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 47 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 48 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 49 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 50 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 51 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 52 H 0.37 20.26 7.80 -92.71 -0.72 19.54 16 53 H 0.25 14.73 8.31 -92.71 -0.77 13.95 16 54 H 0.09 1.42 8.04 -2.39 -0.02 1.40 16 55 H 0.08 1.39 7.94 -2.38 -0.02 1.37 16 Total: -1.00 -67.44 427.09 1.35 -66.08 By element: Atomic # 1 Polarization: 49.45 SS G_CDS: -0.67 Total: 48.78 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: 5.13 Total: -5.33 kcal Atomic # 7 Polarization: -118.47 SS G_CDS: -3.49 Total: -121.96 kcal Atomic # 8 Polarization: -33.45 SS G_CDS: -1.64 Total: -35.09 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -67.44 1.35 -66.08 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229933124.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.437 kcal (2) G-P(sol) polarization free energy of solvation -67.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds