Wall clock time and date at job start Tue Mar 31 2020 21:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 115.54966 * 2 1 4 4 C 1.52992 * 117.49836 * 145.67124 * 2 1 3 5 5 C 1.50702 * 117.50240 * 214.98299 * 4 2 1 6 6 O 1.21288 * 119.99436 * 10.31900 * 5 4 2 7 7 N 1.34770 * 120.00300 * 190.32932 * 5 4 2 8 8 C 1.46924 * 120.63080 * 359.97438 * 7 5 4 9 9 C 1.53190 * 108.77923 * 233.58780 * 8 7 5 10 10 C 1.53042 * 109.31391 * 305.36877 * 9 8 7 11 11 C 1.53044 * 109.52679 * 61.36832 * 10 9 8 12 12 H 1.09004 * 109.49970 * 58.58038 * 11 10 9 13 13 N 1.46504 * 109.49694 * 178.67683 * 11 10 9 14 14 C 1.36931 * 119.99642 * 59.99949 * 13 11 10 15 15 H 1.07996 * 120.00444 * 321.79728 * 14 13 11 16 16 C 1.38817 * 119.99945 * 141.80064 * 14 13 11 17 17 N 1.31624 * 119.99644 * 339.90195 * 16 14 13 18 18 Si 1.86794 * 120.00286 * 159.90903 * 16 14 13 19 19 H 1.48496 * 109.47517 * 59.99561 * 18 16 14 20 20 H 1.48497 * 109.47181 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.46775 * 299.99735 * 18 16 14 22 22 C 1.46498 * 119.99738 * 240.00161 * 13 11 10 23 23 C 1.52994 * 109.47397 * 84.32970 * 22 13 11 24 24 O 1.42898 * 109.47456 * 64.99364 * 23 22 13 25 25 C 1.46927 * 120.62962 * 179.97438 * 7 5 4 26 26 C 1.52994 * 60.00236 * 107.49050 * 4 2 1 27 27 C 1.52998 * 117.50041 * 107.48645 * 26 4 2 28 28 C 1.52999 * 117.49770 * 252.51283 * 26 4 2 29 29 H 1.08999 * 109.47010 * 325.72483 * 1 2 3 30 30 H 1.09002 * 109.46832 * 85.72159 * 1 2 3 31 31 H 1.09000 * 109.47344 * 205.71912 * 1 2 3 32 32 H 1.08998 * 109.47237 * 199.95425 * 3 2 1 33 33 H 1.09003 * 109.47281 * 319.95685 * 3 2 1 34 34 H 1.09006 * 109.47215 * 79.95788 * 3 2 1 35 35 H 1.09005 * 117.49987 * 359.97306 * 4 2 1 36 36 H 1.09008 * 109.58646 * 113.80411 * 8 7 5 37 37 H 1.08994 * 109.58844 * 353.38206 * 8 7 5 38 38 H 1.08999 * 109.50298 * 185.41291 * 9 8 7 39 39 H 1.09004 * 109.49583 * 65.31681 * 9 8 7 40 40 H 1.09001 * 109.46171 * 181.37885 * 10 9 8 41 41 H 1.08993 * 109.45623 * 301.35541 * 10 9 8 42 42 H 0.97001 * 120.00000 * 179.97438 * 17 16 14 43 43 H 1.09005 * 109.46675 * 204.32544 * 22 13 11 44 44 H 1.09000 * 109.47178 * 324.32491 * 22 13 11 45 45 H 1.08999 * 109.46995 * 184.99679 * 23 22 13 46 46 H 1.09001 * 109.46716 * 304.99429 * 23 22 13 47 47 H 0.96696 * 114.00102 * 180.02562 * 24 23 22 48 48 H 1.08994 * 109.58616 * 246.19547 * 25 7 5 49 49 H 1.08994 * 109.58951 * 6.48059 * 25 7 5 50 50 H 1.09003 * 109.46869 * 111.39503 * 27 26 4 51 51 H 1.08993 * 109.47688 * 231.39034 * 27 26 4 52 52 H 1.08996 * 109.46979 * 351.39828 * 27 26 4 53 53 H 1.08995 * 109.47486 * 8.60685 * 28 26 4 54 54 H 1.09000 * 109.47398 * 128.60682 * 28 26 4 55 55 H 1.09004 * 109.47308 * 248.60236 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2365 -1.1207 0.7653 5 6 3.5293 -0.7807 1.4612 6 8 3.8773 0.3768 1.5621 7 7 4.2987 -1.7627 1.9710 8 6 3.8902 -3.1694 1.8568 9 6 3.8979 -3.8000 3.2529 10 6 5.2726 -3.5947 3.8935 11 6 5.5507 -2.0967 4.0385 12 1 4.7715 -1.6393 4.6483 13 7 6.8529 -1.9011 4.6806 14 6 7.9873 -2.3924 4.0916 15 1 7.9652 -3.3494 3.5917 16 6 9.1658 -1.6602 4.1370 17 7 9.1278 -0.3662 4.3752 18 14 10.8054 -2.5112 3.8601 19 1 10.8199 -3.1309 2.5107 20 1 11.9029 -1.5158 3.9601 21 1 10.9970 -3.5637 4.8902 22 6 6.9414 -1.1800 5.9528 23 6 6.6655 -2.1459 7.1068 24 8 7.6976 -3.1329 7.1590 25 6 5.5619 -1.4468 2.6516 26 6 2.2365 -1.1212 -0.7646 27 6 3.5490 -0.7763 -1.4712 28 6 1.3589 -2.1566 -1.4707 29 1 -0.3633 0.8492 0.5787 30 1 -0.3633 0.0767 -1.0248 31 1 -0.3634 -0.9258 0.4460 32 1 3.2181 1.2916 -0.3507 33 1 1.6368 2.0475 -0.6612 34 1 2.1850 1.7855 1.0120 35 1 1.6112 -1.8578 1.2692 36 1 4.5893 -3.7016 1.2116 37 1 2.8863 -3.2254 1.4360 38 1 3.6902 -4.8669 3.1713 39 1 3.1345 -3.3264 3.8702 40 1 5.2885 -4.0638 4.8772 41 1 6.0381 -4.0468 3.2630 42 1 9.9513 0.1454 4.4073 43 1 7.9407 -0.7586 6.0627 44 1 6.2047 -0.3768 5.9671 45 1 6.6436 -1.5930 8.0459 46 1 5.7036 -2.6340 6.9499 47 1 7.5869 -3.7805 7.8685 48 1 6.3974 -1.8384 2.0714 49 1 5.6621 -0.3663 2.7531 50 1 3.9366 -1.6640 -1.9712 51 1 3.3703 0.0067 -2.2080 52 1 4.2753 -0.4262 -0.7378 53 1 0.7297 -2.6606 -0.7371 54 1 0.7294 -1.6576 -2.2075 55 1 1.9922 -2.8894 -1.9708 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264074336.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:10 Heat of formation + Delta-G solvation = -64.829798 kcal Electronic energy + Delta-G solvation = -32211.667798 eV Core-core repulsion = 28249.038881 eV Total energy + Delta-G solvation = -3962.628917 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.82130 -39.86855 -38.44556 -37.60212 -36.25672 -33.83939 -32.85510 -32.02504 -31.41159 -29.55061 -29.47824 -28.73004 -27.10475 -26.21916 -25.95864 -23.86208 -22.97400 -22.11189 -21.13362 -19.42684 -18.76153 -18.31986 -18.21872 -17.96470 -16.85538 -16.72095 -16.42687 -16.04811 -15.65966 -15.47619 -15.25779 -15.01827 -14.91833 -14.72172 -14.37259 -14.14659 -14.08380 -13.82556 -13.66121 -13.48160 -13.26482 -13.18042 -13.12893 -13.07089 -13.01902 -12.81418 -12.74868 -12.66167 -12.59170 -12.46078 -12.26538 -11.92291 -11.80567 -11.67460 -11.59830 -11.59013 -11.29756 -10.71780 -10.66460 -10.60235 -10.43461 -10.16108 -9.55594 -8.48137 -7.77349 -5.36170 1.43792 1.48559 1.54129 1.59521 2.04845 2.55272 2.71062 3.34310 3.49576 3.55194 3.66015 3.69354 3.78477 3.95096 4.09201 4.13636 4.16180 4.21107 4.27898 4.33975 4.46797 4.51896 4.57545 4.64068 4.66907 4.73407 4.75228 4.80342 4.83621 4.91188 4.92615 4.95518 4.99994 5.02081 5.03564 5.04696 5.07247 5.10847 5.14926 5.19401 5.20873 5.23498 5.35138 5.45577 5.47958 5.58468 5.61684 5.62875 5.70889 5.78692 6.51959 6.59445 7.17749 7.24700 7.31514 7.90997 8.43373 9.21441 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015331 B = 0.003305 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.934591 B = 8470.120732 C = 8889.550003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.094 4.094 3 C -0.103 4.103 4 C -0.184 4.184 5 C 0.533 3.467 6 O -0.586 6.586 7 N -0.604 5.604 8 C 0.107 3.893 9 C -0.122 4.122 10 C -0.114 4.114 11 C 0.168 3.832 12 H 0.045 0.955 13 N -0.581 5.581 14 C -0.229 4.229 15 H 0.053 0.947 16 C -0.035 4.035 17 N -0.925 5.925 18 Si 0.950 3.050 19 H -0.276 1.276 20 H -0.299 1.299 21 H -0.282 1.282 22 C 0.142 3.858 23 C 0.073 3.927 24 O -0.573 6.573 25 C 0.129 3.871 26 C -0.082 4.082 27 C -0.122 4.122 28 C -0.109 4.109 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.042 0.958 33 H 0.063 0.937 34 H 0.040 0.960 35 H 0.148 0.852 36 H 0.068 0.932 37 H 0.115 0.885 38 H 0.103 0.897 39 H 0.067 0.933 40 H 0.055 0.945 41 H 0.047 0.953 42 H 0.246 0.754 43 H 0.063 0.937 44 H 0.033 0.967 45 H 0.046 0.954 46 H 0.039 0.961 47 H 0.376 0.624 48 H 0.044 0.956 49 H 0.038 0.962 50 H 0.073 0.927 51 H 0.068 0.932 52 H 0.025 0.975 53 H 0.076 0.924 54 H 0.076 0.924 55 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.905 -7.896 -7.700 23.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.095 4.095 3 C -0.160 4.160 4 C -0.204 4.204 5 C 0.323 3.677 6 O -0.466 6.466 7 N -0.337 5.337 8 C -0.014 4.014 9 C -0.160 4.160 10 C -0.153 4.153 11 C 0.060 3.940 12 H 0.064 0.936 13 N -0.301 5.301 14 C -0.360 4.360 15 H 0.070 0.930 16 C -0.231 4.231 17 N -0.570 5.570 18 Si 0.780 3.220 19 H -0.202 1.202 20 H -0.225 1.225 21 H -0.208 1.208 22 C 0.015 3.985 23 C -0.007 4.007 24 O -0.378 6.378 25 C 0.004 3.996 26 C -0.083 4.083 27 C -0.179 4.179 28 C -0.165 4.165 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.059 0.941 35 H 0.166 0.834 36 H 0.086 0.914 37 H 0.133 0.867 38 H 0.121 0.879 39 H 0.086 0.914 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.055 0.945 43 H 0.081 0.919 44 H 0.051 0.949 45 H 0.064 0.936 46 H 0.057 0.943 47 H 0.222 0.778 48 H 0.062 0.938 49 H 0.056 0.944 50 H 0.092 0.908 51 H 0.087 0.913 52 H 0.044 0.956 53 H 0.095 0.905 54 H 0.094 0.906 55 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -20.354 -6.833 -8.148 22.964 hybrid contribution 1.753 0.076 0.923 1.983 sum -18.600 -6.757 -7.226 21.067 Atomic orbital electron populations 1.21339 0.89211 1.02822 1.03053 1.21812 0.96086 0.90356 1.01212 1.21256 0.99349 0.94667 1.00732 1.22770 0.96114 1.05761 0.95799 1.20399 0.85254 0.84318 0.77729 1.90681 1.74335 1.21359 1.60259 1.48336 1.21491 1.08038 1.55794 1.21977 1.02167 0.79297 0.97969 1.21902 0.96307 1.02306 0.95485 1.21790 0.97045 0.96048 1.00436 1.20760 0.87387 0.94968 0.90841 0.93629 1.43829 1.01971 1.64830 1.19498 1.18846 0.88039 0.98485 1.30642 0.92984 1.25725 1.01609 0.94853 1.00962 1.70133 1.26543 1.06065 1.54306 0.85618 0.80651 0.77738 0.78041 1.20226 1.22514 1.20840 1.20902 1.01265 0.91816 0.84489 1.22790 0.89480 0.90534 0.97912 1.86764 1.49924 1.43929 1.57162 1.21696 0.84279 0.99005 0.94630 1.21801 0.97782 0.99798 0.88897 1.21417 0.94695 1.02103 0.99694 1.21396 0.98442 0.96279 1.00428 0.92333 0.90260 0.90714 0.93937 0.91796 0.94103 0.83424 0.91358 0.86738 0.87871 0.91412 0.92583 0.93382 0.94521 0.91913 0.94863 0.93633 0.94258 0.77785 0.93790 0.94354 0.90807 0.91302 0.95637 0.90502 0.90551 0.91273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.52 8.87 71.98 0.64 -0.88 16 2 C -0.09 -2.01 2.70 -52.18 -0.14 -2.15 16 3 C -0.10 -2.84 7.81 71.98 0.56 -2.28 16 4 C -0.18 -4.24 4.09 -11.54 -0.05 -4.28 16 5 C 0.53 18.22 5.72 87.66 0.50 18.72 16 6 O -0.59 -25.57 12.31 -3.06 -0.04 -25.61 16 7 N -0.60 -20.39 2.97 -818.97 -2.43 -22.83 16 8 C 0.11 2.53 6.35 86.36 0.55 3.08 16 9 C -0.12 -2.81 6.08 30.67 0.19 -2.62 16 10 C -0.11 -3.83 5.11 30.62 0.16 -3.68 16 11 C 0.17 7.04 2.78 45.06 0.13 7.16 16 12 H 0.05 1.90 7.87 -2.38 -0.02 1.88 16 13 N -0.58 -28.95 2.32 -677.64 -1.57 -30.53 16 14 C -0.23 -12.63 7.90 84.04 0.66 -11.97 16 15 H 0.05 2.87 6.89 -2.91 -0.02 2.85 16 16 C -0.04 -2.04 4.92 84.86 0.42 -1.62 16 17 N -0.93 -56.76 11.52 21.65 0.25 -56.51 16 18 Si 0.95 47.17 29.60 68.60 2.03 49.20 16 19 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 20 H -0.30 -14.96 7.11 99.48 0.71 -14.25 16 21 H -0.28 -13.87 7.11 99.48 0.71 -13.16 16 22 C 0.14 6.91 5.56 86.38 0.48 7.39 16 23 C 0.07 2.81 7.39 71.98 0.53 3.34 16 24 O -0.57 -23.39 13.40 -148.98 -2.00 -25.39 16 25 C 0.13 5.68 5.76 86.35 0.50 6.18 16 26 C -0.08 -1.58 2.70 -52.18 -0.14 -1.72 16 27 C -0.12 -2.88 8.22 71.98 0.59 -2.29 16 28 C -0.11 -1.24 8.88 71.98 0.64 -0.60 16 29 H 0.06 0.88 8.09 -2.39 -0.02 0.86 16 30 H 0.08 0.87 8.02 -2.39 -0.02 0.85 16 31 H 0.07 0.82 7.78 -2.39 -0.02 0.80 16 32 H 0.04 1.38 5.14 -2.39 -0.01 1.37 16 33 H 0.06 1.44 8.13 -2.39 -0.02 1.42 16 34 H 0.04 1.32 7.38 -2.38 -0.02 1.30 16 35 H 0.15 2.52 6.91 -2.38 -0.02 2.50 16 36 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 37 H 0.11 1.88 5.74 -2.39 -0.01 1.86 16 38 H 0.10 1.74 8.14 -2.39 -0.02 1.73 16 39 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.05 1.79 7.06 -2.39 -0.02 1.77 16 42 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 43 H 0.06 3.59 5.60 -2.38 -0.01 3.58 16 44 H 0.03 1.58 8.04 -2.39 -0.02 1.56 16 45 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.38 10.66 9.12 -74.06 -0.68 9.99 16 48 H 0.04 2.16 7.50 -2.39 -0.02 2.14 16 49 H 0.04 2.03 7.00 -2.39 -0.02 2.01 16 50 H 0.07 1.50 7.92 -2.39 -0.02 1.48 16 51 H 0.07 1.50 8.09 -2.39 -0.02 1.48 16 52 H 0.02 0.80 5.54 -2.39 -0.01 0.79 16 53 H 0.08 0.65 7.78 -2.39 -0.02 0.63 16 54 H 0.08 0.72 8.02 -2.39 -0.02 0.70 16 55 H 0.07 0.73 7.92 -2.38 -0.02 0.71 16 Total: -1.00 -76.28 412.96 2.64 -73.63 By element: Atomic # 1 Polarization: 26.04 SS G_CDS: 0.19 Total: 26.23 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: 6.21 Total: 11.79 kcal Atomic # 7 Polarization: -106.10 SS G_CDS: -3.76 Total: -109.86 kcal Atomic # 8 Polarization: -48.96 SS G_CDS: -2.03 Total: -51.00 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.20 kcal Total: -76.28 2.64 -73.63 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264074336.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.805 kcal (2) G-P(sol) polarization free energy of solvation -76.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds