Wall clock time and date at job start Tue Mar 31 2020 21:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00138 * 2 1 4 4 H 1.48497 * 109.47359 * 273.99313 * 3 2 1 5 5 H 1.48495 * 109.47139 * 33.99623 * 3 2 1 6 6 H 1.48499 * 109.46887 * 153.99702 * 3 2 1 7 7 C 1.38814 * 119.99562 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00443 * 352.03584 * 7 2 1 9 9 N 1.36944 * 119.99559 * 172.04054 * 7 2 1 10 10 C 1.47419 * 125.65160 * 307.08645 * 9 7 2 11 11 C 1.54909 * 104.83258 * 155.90546 * 10 9 7 12 12 C 1.55158 * 101.58022 * 37.01521 * 11 10 9 13 13 C 1.47028 * 125.64423 * 127.12897 * 9 7 2 14 14 H 1.08997 * 109.88291 * 300.59054 * 13 9 7 15 15 C 1.52995 * 109.88319 * 61.60642 * 13 9 7 16 16 C 1.52998 * 109.47249 * 289.46712 * 15 13 9 17 17 C 1.53004 * 109.47505 * 186.09466 * 16 15 13 18 18 N 1.46496 * 109.47526 * 179.97438 * 17 16 15 19 19 C 1.34773 * 120.00253 * 179.97438 * 18 17 16 20 20 O 1.21278 * 119.99802 * 359.97438 * 19 18 17 21 21 C 1.50700 * 120.00067 * 179.97438 * 19 18 17 22 22 C 1.53003 * 109.46990 * 179.97438 * 21 19 18 23 23 C 1.52998 * 109.47154 * 180.02562 * 22 21 19 24 24 C 1.53187 * 109.54126 * 294.55314 * 23 22 21 25 25 C 1.53092 * 109.16359 * 183.15080 * 24 23 22 26 26 O 1.42900 * 109.41037 * 57.60963 * 25 24 23 27 27 C 1.42900 * 114.10064 * 298.83931 * 26 25 24 28 28 C 1.53087 * 109.41686 * 61.16233 * 27 26 25 29 29 H 0.96998 * 119.99917 * 359.97438 * 1 2 3 30 30 H 1.09004 * 110.36932 * 274.74945 * 10 9 7 31 31 H 1.09001 * 110.36649 * 37.07124 * 10 9 7 32 32 H 1.09003 * 111.00514 * 155.08381 * 11 10 9 33 33 H 1.08992 * 111.00634 * 278.89912 * 11 10 9 34 34 H 1.08999 * 110.72062 * 206.13708 * 12 11 10 35 35 H 1.08989 * 110.72470 * 82.85840 * 12 11 10 36 36 H 1.09000 * 109.47573 * 169.46488 * 15 13 9 37 37 H 1.08999 * 109.47445 * 49.46284 * 15 13 9 38 38 H 1.09001 * 109.47728 * 66.08892 * 16 15 13 39 39 H 1.09003 * 109.46976 * 306.08825 * 16 15 13 40 40 H 1.09001 * 109.47096 * 59.99040 * 17 16 15 41 41 H 1.09003 * 109.46480 * 299.99663 * 17 16 15 42 42 H 0.97005 * 119.99622 * 359.97438 * 18 17 16 43 43 H 1.09000 * 109.46898 * 60.00039 * 21 19 18 44 44 H 1.08990 * 109.47371 * 300.00017 * 21 19 18 45 45 H 1.09003 * 109.46767 * 300.00151 * 22 21 19 46 46 H 1.09000 * 109.47227 * 60.00291 * 22 21 19 47 47 H 1.08995 * 109.54770 * 54.81761 * 23 22 21 48 48 H 1.08995 * 109.52100 * 303.06361 * 24 23 22 49 49 H 1.09001 * 109.51715 * 63.24569 * 24 23 22 50 50 H 1.08993 * 109.48371 * 297.62903 * 25 24 23 51 51 H 1.09004 * 109.47851 * 177.58986 * 25 24 23 52 52 H 1.08993 * 109.48053 * 301.17647 * 27 26 25 53 53 H 1.09007 * 109.48144 * 181.14424 * 27 26 25 54 54 H 1.08997 * 109.52320 * 182.48622 * 28 27 26 55 55 H 1.09005 * 109.57647 * 62.32358 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4133 2.0952 -1.3966 5 1 1.4925 2.6268 0.7828 6 1 3.5875 1.4171 0.6138 7 6 2.0102 -1.2022 -0.0005 8 1 1.4780 -2.1331 0.1286 9 7 3.3697 -1.2079 -0.1648 10 6 4.1051 -0.5565 -1.2639 11 6 5.5261 -0.3096 -0.6987 12 6 5.7454 -1.5832 0.1599 13 6 4.3376 -1.8654 0.7255 14 1 4.2515 -1.4573 1.7326 15 6 4.0799 -3.3732 0.7514 16 6 2.7760 -3.6550 1.5007 17 6 2.5951 -5.1660 1.6593 18 7 1.3470 -5.4358 2.3773 19 6 0.9778 -6.7065 2.6331 20 8 1.6787 -7.6266 2.2686 21 6 -0.3059 -6.9839 3.3722 22 6 -0.4874 -8.4950 3.5295 23 6 -1.7910 -8.7767 4.2793 24 6 -1.6851 -8.2407 5.7104 25 6 -2.9622 -8.5963 6.4760 26 8 -3.1482 -10.0130 6.4573 27 6 -3.3009 -10.5643 5.1478 28 6 -2.0374 -10.2878 4.3288 29 1 -0.4850 0.8400 0.0004 30 1 4.1510 -1.2143 -2.1319 31 1 3.6325 0.3894 -1.5284 32 1 6.2608 -0.2485 -1.5016 33 1 5.5503 0.5879 -0.0807 34 1 6.4527 -1.3878 0.9659 35 1 6.0853 -2.4126 -0.4602 36 1 4.9052 -3.8743 1.2573 37 1 3.9998 -3.7458 -0.2698 38 1 1.9374 -3.2458 0.9373 39 1 2.8145 -3.1885 2.4851 40 1 3.4337 -5.5752 2.2227 41 1 2.5566 -5.6325 0.6749 42 1 0.7862 -4.6998 2.6685 43 1 -1.1448 -6.5742 2.8097 44 1 -0.2664 -6.5179 4.3567 45 1 -0.5271 -8.9606 2.5447 46 1 0.3515 -8.9051 4.0918 47 1 -2.6196 -8.2887 3.7662 48 1 -0.8256 -8.6923 6.2058 49 1 -1.5648 -7.1576 5.6856 50 1 -3.8163 -8.1113 6.0035 51 1 -2.8747 -8.2548 7.5075 52 1 -4.1594 -10.1050 4.6579 53 1 -3.4574 -11.6405 5.2223 54 1 -2.1692 -10.6686 3.3160 55 1 -1.1845 -10.7808 4.7953 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266237719.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:38 Heat of formation + Delta-G solvation = -114.558697 kcal Electronic energy + Delta-G solvation = -29475.845302 eV Core-core repulsion = 25511.059978 eV Total energy + Delta-G solvation = -3964.785323 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.91999 -40.18450 -39.61976 -36.77899 -36.20771 -34.60180 -33.88367 -32.27172 -31.82439 -31.70388 -29.83012 -27.19432 -26.34094 -25.31696 -24.45520 -23.10725 -22.72264 -21.75355 -21.17729 -20.90313 -20.77223 -18.87531 -18.00554 -17.83745 -17.05185 -16.95457 -16.83608 -16.77792 -16.28894 -16.02482 -15.66064 -15.43927 -15.07092 -14.95458 -14.71844 -14.58748 -14.16320 -14.00967 -13.92173 -13.52099 -13.40635 -13.18585 -13.12132 -13.03958 -12.96460 -12.88201 -12.46773 -12.42036 -12.25381 -12.14311 -12.12248 -11.89583 -11.74665 -11.60798 -11.39458 -11.36106 -11.25201 -11.15459 -11.11500 -10.80492 -10.61936 -10.41097 -10.06127 -8.40486 -8.04725 -5.76647 1.32178 1.39669 1.52850 1.65760 2.28233 2.44662 3.01652 3.12890 3.44642 3.67501 3.71240 3.80986 3.91172 4.03294 4.04439 4.10945 4.17072 4.17801 4.25120 4.27287 4.30628 4.42615 4.48757 4.51484 4.58056 4.62811 4.67409 4.76246 4.80925 4.81780 4.83556 4.84240 4.90109 4.94473 4.95298 4.99217 5.04174 5.07706 5.17933 5.19345 5.20707 5.24558 5.29757 5.31536 5.44201 5.48054 5.51172 5.56679 5.66750 6.04355 6.30747 6.44629 6.58357 6.98281 7.25820 7.57186 8.35957 9.01655 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.017191 B = 0.001895 C = 0.001762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.393882 B =14770.114049 C =15888.212362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.012 4.012 3 Si 0.944 3.056 4 H -0.287 1.287 5 H -0.311 1.311 6 H -0.250 1.250 7 C -0.237 4.237 8 H 0.066 0.934 9 N -0.619 5.619 10 C 0.108 3.892 11 C -0.131 4.131 12 C -0.116 4.116 13 C 0.146 3.854 14 H 0.029 0.971 15 C -0.107 4.107 16 C -0.128 4.128 17 C 0.130 3.870 18 N -0.724 5.724 19 C 0.504 3.496 20 O -0.591 6.591 21 C -0.136 4.136 22 C -0.089 4.089 23 C -0.086 4.086 24 C -0.152 4.152 25 C 0.056 3.944 26 O -0.408 6.408 27 C 0.058 3.942 28 C -0.150 4.150 29 H 0.261 0.739 30 H 0.031 0.969 31 H 0.018 0.982 32 H 0.095 0.905 33 H 0.057 0.943 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.048 0.952 38 H 0.072 0.928 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.046 0.954 42 H 0.412 0.588 43 H 0.111 0.889 44 H 0.116 0.884 45 H 0.056 0.944 46 H 0.055 0.945 47 H 0.083 0.917 48 H 0.062 0.938 49 H 0.089 0.911 50 H 0.059 0.941 51 H 0.101 0.899 52 H 0.059 0.941 53 H 0.101 0.899 54 H 0.081 0.919 55 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.114 -14.487 10.029 17.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.209 4.209 3 Si 0.773 3.227 4 H -0.215 1.215 5 H -0.239 1.239 6 H -0.174 1.174 7 C -0.367 4.367 8 H 0.083 0.917 9 N -0.346 5.346 10 C -0.016 4.016 11 C -0.169 4.169 12 C -0.154 4.154 13 C 0.041 3.959 14 H 0.047 0.953 15 C -0.147 4.147 16 C -0.165 4.165 17 C 0.006 3.994 18 N -0.375 5.375 19 C 0.293 3.707 20 O -0.472 6.472 21 C -0.175 4.175 22 C -0.127 4.127 23 C -0.105 4.105 24 C -0.190 4.190 25 C -0.021 4.021 26 O -0.328 6.328 27 C -0.019 4.019 28 C -0.188 4.188 29 H 0.070 0.930 30 H 0.048 0.952 31 H 0.036 0.964 32 H 0.113 0.887 33 H 0.076 0.924 34 H 0.106 0.894 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.067 0.933 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.064 0.936 42 H 0.248 0.752 43 H 0.129 0.871 44 H 0.134 0.866 45 H 0.075 0.925 46 H 0.074 0.926 47 H 0.101 0.899 48 H 0.081 0.919 49 H 0.108 0.892 50 H 0.077 0.923 51 H 0.119 0.881 52 H 0.077 0.923 53 H 0.119 0.881 54 H 0.099 0.901 55 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.399 -15.142 9.947 18.121 hybrid contribution -0.326 1.579 -0.501 1.688 sum 0.073 -13.563 9.446 16.529 Atomic orbital electron populations 1.69881 1.07410 1.27284 1.54738 1.26472 0.95671 1.01460 0.97326 0.85742 0.79737 0.80138 0.77074 1.21454 1.23937 1.17376 1.18642 0.81029 0.92055 1.44926 0.91733 1.44748 1.01556 1.63643 1.24673 1.21997 0.92613 0.95010 0.91984 1.22769 0.95853 0.98206 1.00064 1.22583 0.95444 0.97549 0.99786 1.21323 0.89365 0.91935 0.93269 0.95316 1.21779 0.96422 0.96935 0.99518 1.21957 1.00566 0.92847 1.01141 1.21270 0.86097 0.96407 0.95634 1.46164 1.24830 1.08337 1.58196 1.21423 0.88300 0.81977 0.79002 1.90655 1.56658 1.45147 1.54789 1.21781 0.94179 0.99218 1.02318 1.21262 0.97333 0.93665 1.00455 1.21211 0.97511 0.95974 0.95790 1.22313 0.98846 1.02473 0.95339 1.22723 0.96635 0.80859 1.01857 1.87895 1.93374 1.22631 1.28860 1.22690 0.96444 0.99711 0.83007 1.22226 0.99021 0.96213 1.01359 0.92952 0.95155 0.96373 0.88662 0.92446 0.89383 0.89917 0.90443 0.93276 0.90992 0.92071 0.91930 0.93581 0.75235 0.87096 0.86569 0.92482 0.92637 0.89887 0.91878 0.89246 0.92261 0.88111 0.92282 0.88097 0.90085 0.91958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.91 13.97 21.65 0.30 -56.61 16 2 C -0.01 -0.68 5.50 84.86 0.47 -0.21 16 3 Si 0.94 45.59 25.12 68.60 1.72 47.32 16 4 H -0.29 -13.73 7.00 99.48 0.70 -13.03 16 5 H -0.31 -15.28 7.11 99.48 0.71 -14.57 16 6 H -0.25 -11.37 6.44 99.48 0.64 -10.73 16 7 C -0.24 -12.56 9.35 84.03 0.79 -11.78 16 8 H 0.07 3.67 5.18 -2.91 -0.02 3.66 16 9 N -0.62 -27.51 2.38 -668.26 -1.59 -29.11 16 10 C 0.11 4.33 6.19 86.86 0.54 4.86 16 11 C -0.13 -4.00 7.09 31.99 0.23 -3.77 16 12 C -0.12 -3.21 6.47 31.78 0.21 -3.00 16 13 C 0.15 5.22 3.21 45.34 0.15 5.37 16 14 H 0.03 1.10 8.10 -2.39 -0.02 1.08 16 15 C -0.11 -3.40 4.69 30.59 0.14 -3.26 16 16 C -0.13 -4.23 4.86 30.59 0.15 -4.08 16 17 C 0.13 3.92 5.67 86.38 0.49 4.41 16 18 N -0.72 -19.67 5.56 -463.07 -2.57 -22.25 16 19 C 0.50 13.85 7.83 87.66 0.69 14.53 16 20 O -0.59 -20.98 15.98 -3.02 -0.05 -21.03 16 21 C -0.14 -2.47 5.46 29.85 0.16 -2.31 16 22 C -0.09 -1.67 3.98 30.59 0.12 -1.55 16 23 C -0.09 -1.25 2.27 -10.67 -0.02 -1.27 16 24 C -0.15 -2.05 5.10 30.69 0.16 -1.89 16 25 C 0.06 0.76 6.84 72.01 0.49 1.25 16 26 O -0.41 -7.36 10.76 -148.98 -1.60 -8.96 16 27 C 0.06 0.80 6.84 72.01 0.49 1.29 16 28 C -0.15 -2.16 5.42 30.68 0.17 -2.00 16 29 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 30 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 31 H 0.02 0.80 4.62 -2.39 -0.01 0.79 16 32 H 0.09 2.30 8.14 -2.39 -0.02 2.29 16 33 H 0.06 1.84 7.54 -2.39 -0.02 1.82 16 34 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.08 2.03 7.85 -2.39 -0.02 2.01 16 36 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.07 2.96 4.50 -2.39 -0.01 2.95 16 39 H 0.06 1.98 8.11 -2.39 -0.02 1.96 16 40 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.41 9.86 8.47 -92.70 -0.79 9.07 16 43 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.12 1.61 6.66 -2.39 -0.02 1.59 16 45 H 0.06 1.23 8.10 -2.39 -0.02 1.21 16 46 H 0.05 1.20 8.10 -2.39 -0.02 1.18 16 47 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 48 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 49 H 0.09 0.97 6.75 -2.39 -0.02 0.95 16 50 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 51 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 52 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 53 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 54 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 55 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 Total: -1.00 -69.66 413.68 1.61 -68.05 By element: Atomic # 1 Polarization: 25.98 SS G_CDS: -0.01 Total: 25.97 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: 5.41 Total: -3.39 kcal Atomic # 7 Polarization: -104.09 SS G_CDS: -3.86 Total: -107.96 kcal Atomic # 8 Polarization: -28.34 SS G_CDS: -1.65 Total: -29.99 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 1.72 Total: 47.32 kcal Total: -69.66 1.61 -68.05 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266237719.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.507 kcal (2) G-P(sol) polarization free energy of solvation -69.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds