Wall clock time and date at job start Tue Mar 31 2020 21:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52993 * 109.52428 * 2 1 4 4 C 1.53181 * 109.51787 * 239.81021 * 2 1 3 5 5 C 1.53186 * 109.02951 * 183.11859 * 4 2 1 6 6 C 1.53087 * 109.16665 * 56.98173 * 5 4 2 7 7 H 1.09001 * 109.48123 * 62.37055 * 6 5 4 8 8 C 1.52992 * 109.48164 * 182.40507 * 6 5 4 9 9 C 1.50705 * 109.47342 * 184.93954 * 8 6 5 10 10 O 1.21284 * 119.99697 * 0.02562 * 9 8 6 11 11 N 1.34777 * 120.00183 * 179.97438 * 9 8 6 12 12 C 1.46498 * 119.99908 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.46703 * 180.02562 * 12 11 9 14 14 C 1.53003 * 109.46944 * 180.02562 * 13 12 11 15 15 H 1.09000 * 110.64322 * 54.29810 * 14 13 12 16 16 C 1.55156 * 110.72202 * 177.44435 * 14 13 12 17 17 C 1.55118 * 101.48661 * 153.73315 * 16 14 13 18 18 N 1.47419 * 104.94416 * 323.21735 * 17 16 14 19 19 C 1.36936 * 125.65205 * 204.03667 * 18 17 16 20 20 H 1.08002 * 120.00192 * 179.97438 * 19 18 17 21 21 C 1.38819 * 119.99638 * 359.96411 * 19 18 17 22 22 N 1.31614 * 120.00062 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99653 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47005 * 90.00155 * 23 21 19 25 25 H 1.48496 * 109.47352 * 209.99832 * 23 21 19 26 26 H 1.48507 * 109.47552 * 330.00118 * 23 21 19 27 27 C 1.47027 * 108.70215 * 24.00706 * 18 17 16 28 28 O 1.42905 * 109.41504 * 302.39123 * 6 5 4 29 29 C 1.42905 * 114.09831 * 61.15479 * 28 6 5 30 30 H 1.09000 * 109.46936 * 299.87674 * 1 2 3 31 31 H 1.09000 * 109.46440 * 59.86893 * 1 2 3 32 32 H 1.08992 * 109.47396 * 179.87472 * 1 2 3 33 33 H 1.09006 * 109.46831 * 180.12375 * 3 2 1 34 34 H 1.08998 * 109.47467 * 300.12530 * 3 2 1 35 35 H 1.09002 * 109.47252 * 60.12419 * 3 2 1 36 36 H 1.08997 * 109.54268 * 302.97654 * 4 2 1 37 37 H 1.08993 * 109.54386 * 63.16556 * 4 2 1 38 38 H 1.09001 * 109.51857 * 176.88572 * 5 4 2 39 39 H 1.08995 * 109.52201 * 297.01063 * 5 4 2 40 40 H 1.09003 * 109.47648 * 304.94539 * 8 6 5 41 41 H 1.08999 * 109.47296 * 64.94309 * 8 6 5 42 42 H 0.97002 * 119.99419 * 0.02562 * 11 9 8 43 43 H 1.08998 * 109.46952 * 299.99987 * 12 11 9 44 44 H 1.08996 * 109.47156 * 60.00437 * 12 11 9 45 45 H 1.08998 * 109.47277 * 299.99630 * 13 12 11 46 46 H 1.08999 * 109.47586 * 60.00186 * 13 12 11 47 47 H 1.09003 * 111.00051 * 271.93500 * 16 14 13 48 48 H 1.08995 * 111.00524 * 35.78557 * 16 14 13 49 49 H 1.09000 * 110.41928 * 204.29017 * 17 16 14 50 50 H 1.09003 * 110.30276 * 82.08832 * 17 16 14 51 51 H 0.97000 * 119.99673 * 180.02562 * 22 21 19 52 52 H 1.09002 * 109.88087 * 239.52290 * 27 18 17 53 53 H 1.09000 * 110.00847 * 118.42941 * 27 18 17 54 54 H 1.08998 * 109.47767 * 58.82768 * 29 28 6 55 55 H 1.09004 * 109.47562 * 178.86126 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0414 1.4420 0.0000 4 6 2.0418 -0.7260 -1.2480 5 6 3.5716 -0.7879 -1.1977 6 6 4.0043 -1.4817 0.0965 7 1 3.6315 -2.5059 0.1021 8 6 5.5318 -1.4941 0.1828 9 6 5.9602 -2.2820 1.3939 10 8 5.1259 -2.7847 2.1166 11 7 7.2705 -2.4291 1.6733 12 6 7.6869 -3.1955 2.8503 13 6 9.2144 -3.2077 2.9365 14 6 9.6495 -4.0088 4.1654 15 1 9.2085 -5.0055 4.1503 16 6 11.1966 -4.0941 4.2457 17 6 11.4170 -4.2802 5.7698 18 7 10.3849 -3.4434 6.4082 19 6 10.4514 -2.9190 7.6714 20 1 9.6393 -2.3154 8.0490 21 6 11.5627 -3.1634 8.4667 22 7 12.5520 -3.8996 8.0067 23 14 11.6538 -2.4474 10.1896 24 1 11.0605 -3.4061 11.1560 25 1 13.0733 -2.1983 10.5477 26 1 10.9001 -1.1686 10.2348 27 6 9.2724 -3.2646 5.4637 28 8 3.4694 -0.7738 1.2168 29 6 2.0415 -0.7243 1.2480 30 1 -0.3633 0.5119 0.8911 31 1 -0.3632 0.5159 -0.8888 32 1 -0.3634 -1.0276 -0.0022 33 1 3.1314 1.4409 -0.0022 34 1 1.6767 1.9568 -0.8888 35 1 1.6803 1.9555 0.8911 36 1 1.6367 -1.7376 -1.2731 37 1 1.7266 -0.1845 -2.1398 38 1 3.9417 -1.3514 -2.0543 39 1 3.9781 0.2231 -1.2235 40 1 5.9427 -1.9557 -0.7151 41 1 5.8993 -0.4713 0.2662 42 1 7.9377 -2.0274 1.0950 43 1 7.2763 -2.7340 3.7483 44 1 7.3192 -4.2182 2.7667 45 1 9.6254 -3.6690 2.0385 46 1 9.5819 -2.1850 3.0203 47 1 11.5700 -4.9519 3.6864 48 1 11.6575 -3.1706 3.8954 49 1 12.4121 -3.9385 6.0546 50 1 11.2823 -5.3259 6.0465 51 1 13.3283 -4.0706 8.5626 52 1 9.1300 -2.2042 5.2552 53 1 8.3578 -3.6864 5.8806 54 1 1.6431 -1.7386 1.2686 55 1 1.7159 -0.1873 2.1390 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267551173.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:47:08 Heat of formation + Delta-G solvation = -108.822721 kcal Electronic energy + Delta-G solvation = -29654.582605 eV Core-core repulsion = 25690.046012 eV Total energy + Delta-G solvation = -3964.536593 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.23180 -40.27780 -39.36570 -36.54869 -36.12627 -34.74205 -34.14144 -32.52856 -31.01184 -30.29626 -28.17865 -28.14516 -27.00716 -26.48370 -25.14987 -23.55256 -22.59340 -21.92761 -21.48327 -20.61918 -19.81050 -18.89764 -17.88302 -17.48591 -17.10338 -17.01875 -16.60675 -16.42125 -16.09040 -15.94276 -15.59200 -15.26834 -15.05790 -14.91022 -14.49470 -14.27419 -13.98899 -13.78494 -13.53533 -13.50624 -13.33892 -13.15369 -13.03825 -12.89712 -12.83647 -12.81226 -12.75267 -12.67268 -12.44258 -12.21664 -12.00532 -11.93763 -11.78310 -11.75906 -11.54697 -11.43177 -11.35406 -11.25247 -11.10641 -10.77983 -10.72222 -10.20056 -10.01701 -8.88619 -7.78485 -5.22797 1.44244 1.46486 1.55380 1.75931 2.26594 2.48481 2.88556 3.30077 3.67551 3.72205 3.76458 3.78826 3.80212 3.84545 3.94989 4.05035 4.16050 4.19208 4.27623 4.35805 4.39450 4.41841 4.56712 4.63927 4.64340 4.67710 4.71085 4.72937 4.76096 4.80713 4.84131 4.89324 4.90156 4.96064 5.03019 5.04968 5.07801 5.12644 5.14142 5.20145 5.24664 5.27052 5.31376 5.40219 5.42958 5.51023 5.52970 5.55028 5.69076 5.83160 6.31807 6.38553 6.67014 7.10990 7.38706 7.78743 8.42663 9.23086 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.019552 B = 0.001764 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.739200 B =15869.323470 C =16892.820557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.100 4.100 3 C -0.134 4.134 4 C -0.111 4.111 5 C -0.145 4.145 6 C 0.100 3.900 7 H 0.043 0.957 8 C -0.127 4.127 9 C 0.504 3.496 10 O -0.583 6.583 11 N -0.720 5.720 12 C 0.125 3.875 13 C -0.098 4.098 14 C -0.085 4.085 15 H 0.077 0.923 16 C -0.121 4.121 17 C 0.149 3.851 18 N -0.629 5.629 19 C -0.242 4.242 20 H 0.075 0.925 21 C -0.068 4.068 22 N -0.948 5.948 23 Si 0.981 3.019 24 H -0.288 1.288 25 H -0.289 1.289 26 H -0.271 1.271 27 C 0.134 3.866 28 O -0.391 6.391 29 C 0.070 3.930 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.048 0.952 36 H 0.060 0.940 37 H 0.083 0.917 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.144 0.856 41 H 0.118 0.882 42 H 0.417 0.583 43 H 0.040 0.960 44 H 0.058 0.942 45 H 0.100 0.900 46 H 0.073 0.927 47 H 0.087 0.913 48 H 0.068 0.932 49 H 0.072 0.928 50 H -0.018 1.018 51 H 0.247 0.753 52 H 0.024 0.976 53 H 0.008 0.992 54 H 0.038 0.962 55 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.729 8.064 -27.738 34.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.100 4.100 3 C -0.191 4.191 4 C -0.148 4.148 5 C -0.182 4.182 6 C 0.042 3.958 7 H 0.062 0.938 8 C -0.167 4.167 9 C 0.291 3.709 10 O -0.463 6.463 11 N -0.373 5.373 12 C 0.000 4.000 13 C -0.136 4.136 14 C -0.105 4.105 15 H 0.095 0.905 16 C -0.159 4.159 17 C 0.024 3.976 18 N -0.355 5.355 19 C -0.371 4.371 20 H 0.093 0.907 21 C -0.261 4.261 22 N -0.597 5.597 23 Si 0.809 3.191 24 H -0.215 1.215 25 H -0.215 1.215 26 H -0.196 1.196 27 C 0.009 3.991 28 O -0.310 6.310 29 C -0.007 4.007 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.101 0.899 38 H 0.113 0.887 39 H 0.100 0.900 40 H 0.162 0.838 41 H 0.136 0.864 42 H 0.255 0.745 43 H 0.058 0.942 44 H 0.076 0.924 45 H 0.118 0.882 46 H 0.092 0.908 47 H 0.106 0.894 48 H 0.087 0.913 49 H 0.090 0.910 50 H 0.000 1.000 51 H 0.057 0.943 52 H 0.042 0.958 53 H 0.026 0.974 54 H 0.057 0.943 55 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -19.078 7.809 -26.910 33.898 hybrid contribution 0.169 -0.026 1.422 1.432 sum -18.909 7.783 -25.488 32.677 Atomic orbital electron populations 1.21782 0.93142 1.02059 1.02580 1.21204 0.96624 0.96647 0.95550 1.21780 1.01290 0.94233 1.01763 1.21666 0.95175 1.00465 0.97489 1.22237 0.96581 1.02435 0.96964 1.21889 0.92541 0.94788 0.86571 0.93844 1.21835 0.95206 1.02700 0.96911 1.21296 0.82057 0.80140 0.87358 1.90712 1.52793 1.50433 1.52343 1.45940 1.07511 1.55067 1.28773 1.21206 0.95351 0.95668 0.87747 1.21619 0.92889 1.01138 0.97944 1.22021 0.96250 0.98982 0.93197 0.90478 1.22911 0.94813 1.02015 0.96170 1.21808 0.94858 0.91231 0.89738 1.44862 1.18599 1.59152 1.12871 1.19449 1.02483 1.25040 0.90147 0.90704 1.25651 0.96647 1.01135 1.02654 1.70061 1.08961 1.43889 1.36820 0.85041 0.76705 0.78078 0.79279 1.21486 1.21495 1.19569 1.21553 0.89997 0.97168 0.90357 1.87944 1.20625 1.75854 1.46599 1.22644 0.80750 0.98967 0.98312 0.92492 0.91214 0.92632 0.92606 0.91597 0.93268 0.92123 0.89860 0.88701 0.90015 0.83810 0.86409 0.74546 0.94161 0.92387 0.88154 0.90799 0.89415 0.91284 0.90993 0.99976 0.94280 0.95805 0.97448 0.94339 0.89728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 8.49 71.98 0.61 -0.85 16 2 C -0.10 -1.31 0.77 -52.09 -0.04 -1.35 16 3 C -0.13 -1.68 8.08 71.98 0.58 -1.10 16 4 C -0.11 -1.18 4.81 30.72 0.15 -1.03 16 5 C -0.14 -1.50 5.05 30.69 0.16 -1.34 16 6 C 0.10 1.73 2.19 30.62 0.07 1.80 16 7 H 0.04 0.91 7.96 -2.39 -0.02 0.89 16 8 C -0.13 -1.74 5.41 29.85 0.16 -1.58 16 9 C 0.50 11.80 7.71 87.66 0.68 12.48 16 10 O -0.58 -20.12 15.42 10.73 0.17 -19.95 16 11 N -0.72 -14.07 5.56 -463.06 -2.57 -16.64 16 12 C 0.12 3.15 5.54 86.38 0.48 3.63 16 13 C -0.10 -2.27 4.72 30.60 0.14 -2.12 16 14 C -0.08 -2.79 2.95 -9.60 -0.03 -2.81 16 15 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 16 C -0.12 -4.31 6.55 32.06 0.21 -4.10 16 17 C 0.15 7.52 5.89 86.93 0.51 8.03 16 18 N -0.63 -34.05 3.40 -691.55 -2.35 -36.40 16 19 C -0.24 -14.29 10.27 84.04 0.86 -13.42 16 20 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 21 C -0.07 -4.02 5.49 84.86 0.47 -3.56 16 22 N -0.95 -57.88 10.09 21.65 0.22 -57.66 16 23 Si 0.98 47.20 29.55 68.60 2.03 49.23 16 24 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 25 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 26 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 27 C 0.13 5.84 6.11 86.73 0.53 6.37 16 28 O -0.39 -9.21 9.07 -135.21 -1.23 -10.43 16 29 C 0.07 1.35 5.54 72.01 0.40 1.75 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.05 0.79 6.14 -2.38 -0.01 0.78 16 34 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.08 0.65 8.14 -2.39 -0.02 0.64 16 38 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.08 0.78 6.63 -2.39 -0.02 0.77 16 40 H 0.14 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.42 4.86 8.47 -92.71 -0.79 4.08 16 43 H 0.04 1.27 7.58 -2.39 -0.02 1.26 16 44 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.07 1.71 8.01 -2.39 -0.02 1.69 16 47 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 48 H 0.07 2.36 8.05 -2.39 -0.02 2.34 16 49 H 0.07 4.12 5.87 -2.39 -0.01 4.11 16 50 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 51 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 52 H 0.02 1.03 7.73 -2.39 -0.02 1.01 16 53 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 54 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 55 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 Total: -1.00 -79.10 419.11 2.25 -76.85 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: 0.05 Total: 14.23 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: 5.93 Total: 0.78 kcal Atomic # 7 Polarization: -106.00 SS G_CDS: -4.70 Total: -110.70 kcal Atomic # 8 Polarization: -29.33 SS G_CDS: -1.06 Total: -30.39 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.03 Total: 49.23 kcal Total: -79.10 2.25 -76.85 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267551173.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.975 kcal (2) G-P(sol) polarization free energy of solvation -79.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds