Wall clock time and date at job start Tue Mar 31 2020 21:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.52312 * 2 1 4 4 C 1.53175 * 109.52264 * 239.87485 * 2 1 3 5 5 C 1.53311 * 108.96476 * 297.01866 * 4 2 1 6 6 C 1.53095 * 109.19320 * 303.05508 * 5 4 2 7 7 H 1.08990 * 109.48211 * 297.62615 * 6 5 4 8 8 C 1.53005 * 109.48810 * 177.59939 * 6 5 4 9 9 C 1.50694 * 109.47073 * 175.05512 * 8 6 5 10 10 O 1.21281 * 120.00468 * 359.97438 * 9 8 6 11 11 N 1.34781 * 119.99996 * 179.97438 * 9 8 6 12 12 C 1.46503 * 120.00167 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.47358 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.47343 * 179.97438 * 13 12 11 15 15 H 1.08996 * 110.63647 * 56.68888 * 14 13 12 16 16 C 1.55156 * 110.72137 * 180.02562 * 14 13 12 17 17 C 1.54908 * 101.57934 * 153.86711 * 16 14 13 18 18 N 1.47421 * 104.83253 * 322.98893 * 17 16 14 19 19 C 1.36936 * 125.64701 * 204.16509 * 18 17 16 20 20 H 1.08000 * 120.00085 * 179.97438 * 19 18 17 21 21 C 1.38809 * 120.00199 * 359.96182 * 19 18 17 22 22 N 1.31620 * 120.00326 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00309 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47124 * 59.99421 * 23 21 19 25 25 H 1.48501 * 109.47384 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47063 * 299.99785 * 23 21 19 27 27 C 1.47020 * 108.70313 * 24.13284 * 18 17 16 28 28 O 1.42898 * 109.41611 * 57.61496 * 6 5 4 29 29 C 1.42907 * 114.09460 * 298.84156 * 28 6 5 30 30 H 1.09001 * 109.47002 * 59.99689 * 1 2 3 31 31 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47050 * 299.99955 * 1 2 3 33 33 H 1.09007 * 109.46758 * 60.00023 * 3 2 1 34 34 H 1.09001 * 109.46968 * 179.97438 * 3 2 1 35 35 H 1.08993 * 109.47541 * 300.00062 * 3 2 1 36 36 H 1.09000 * 109.54321 * 56.94102 * 4 2 1 37 37 H 1.09003 * 109.54454 * 177.20964 * 4 2 1 38 38 H 1.09003 * 109.50761 * 183.14756 * 5 4 2 39 39 H 1.09003 * 109.50898 * 62.97450 * 5 4 2 40 40 H 1.09009 * 109.47297 * 295.05419 * 8 6 5 41 41 H 1.08997 * 109.47413 * 55.05237 * 8 6 5 42 42 H 0.97001 * 119.99696 * 359.97438 * 11 9 8 43 43 H 1.08999 * 109.46963 * 300.00253 * 12 11 9 44 44 H 1.08997 * 109.47031 * 59.99680 * 12 11 9 45 45 H 1.08998 * 109.47140 * 300.00601 * 13 12 11 46 46 H 1.09004 * 109.46568 * 60.00128 * 13 12 11 47 47 H 1.08997 * 111.00404 * 271.93974 * 16 14 13 48 48 H 1.09001 * 111.00223 * 35.79516 * 16 14 13 49 49 H 1.09001 * 110.36332 * 204.15193 * 17 16 14 50 50 H 1.08998 * 110.46149 * 81.87566 * 17 16 14 51 51 H 0.96991 * 120.00660 * 180.02562 * 22 21 19 52 52 H 1.09008 * 109.87883 * 239.52327 * 27 18 17 53 53 H 1.09001 * 110.01167 * 118.43017 * 27 18 17 54 54 H 1.09007 * 109.47837 * 301.17324 * 29 28 6 55 55 H 1.09008 * 109.49041 * 181.14901 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0414 1.4420 0.0000 4 6 2.0419 -0.7246 -1.2487 5 6 1.5877 -2.1879 -1.1970 6 6 2.0970 -2.8276 0.0973 7 1 3.1869 -2.8196 0.1023 8 6 1.5971 -4.2711 0.1844 9 6 2.1967 -4.9381 1.3953 10 8 2.9502 -4.3202 2.1174 11 7 1.8957 -6.2215 1.6761 12 6 2.4791 -6.8702 2.8530 13 6 1.9781 -8.3132 2.9409 14 6 2.5879 -8.9908 4.1697 15 1 2.3527 -8.4298 5.0741 16 6 2.0986 -10.4586 4.2866 17 6 3.2627 -11.1128 5.0718 18 7 4.4799 -10.4613 4.5546 19 6 5.7417 -10.9925 4.5805 20 1 6.5714 -10.4333 4.1739 21 6 5.9546 -12.2494 5.1296 22 7 4.9437 -12.9306 5.6259 23 14 7.6761 -12.9737 5.1656 24 1 8.5712 -12.0840 5.9482 25 1 7.6354 -14.3159 5.7997 26 1 8.1906 -13.0967 3.7780 27 6 4.1143 -9.1473 4.0057 28 8 1.6098 -2.0862 1.2175 29 6 2.0415 -0.7242 1.2480 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6784 1.9562 0.8901 34 1 3.1314 1.4410 0.0005 35 1 1.6785 1.9562 -0.8899 36 1 1.6357 -0.2464 -2.1400 37 1 3.1308 -0.6817 -1.2745 38 1 1.9941 -2.7257 -2.0535 39 1 0.4988 -2.2321 -1.2212 40 1 0.5102 -4.2747 0.2685 41 1 1.8938 -4.8132 -0.7134 42 1 1.2928 -6.7157 1.0988 43 1 3.5658 -6.8670 2.7683 44 1 2.1831 -6.3279 3.7509 45 1 0.8914 -8.3159 3.0257 46 1 2.2739 -8.8557 2.0429 47 1 1.1669 -10.5162 4.8492 48 1 1.9875 -10.9129 3.3020 49 1 3.2951 -12.1851 4.8786 50 1 3.1557 -10.9234 6.1398 51 1 5.0924 -13.8088 6.0099 52 1 4.3806 -9.0996 2.9497 53 1 4.6289 -8.3579 4.5536 54 1 3.1309 -0.6886 1.2681 55 1 1.6454 -0.2370 2.1391 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267551176.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:47:19 Heat of formation + Delta-G solvation = -108.529642 kcal Electronic energy + Delta-G solvation = -29613.580535 eV Core-core repulsion = 25649.056651 eV Total energy + Delta-G solvation = -3964.523884 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.23200 -40.27959 -39.37665 -36.54801 -36.12547 -34.73950 -34.13820 -32.52639 -31.01412 -30.30067 -28.16952 -28.13226 -27.00488 -26.48229 -25.15366 -23.56899 -22.59784 -21.91901 -21.47525 -20.61410 -19.80830 -18.89551 -17.89318 -17.45892 -17.11514 -17.03731 -16.60055 -16.42483 -16.08568 -15.93536 -15.61119 -15.22531 -15.06416 -14.92968 -14.51788 -14.27440 -13.92874 -13.78663 -13.55967 -13.51416 -13.34709 -13.15252 -13.03873 -12.88555 -12.82123 -12.79403 -12.76718 -12.66466 -12.43759 -12.21307 -12.03618 -11.93809 -11.77339 -11.75960 -11.55281 -11.43194 -11.35114 -11.24964 -11.10820 -10.77555 -10.71796 -10.20386 -10.01773 -8.88231 -7.77773 -5.22282 1.44444 1.48054 1.54575 1.75939 2.26232 2.49000 2.87776 3.30636 3.67611 3.72393 3.75896 3.78793 3.79995 3.84499 3.95635 4.04826 4.16573 4.19268 4.27171 4.36443 4.39030 4.42237 4.56656 4.63468 4.64667 4.67446 4.71314 4.73112 4.76263 4.81127 4.84303 4.89128 4.89977 4.96233 5.03106 5.04787 5.07542 5.12894 5.14522 5.20302 5.24436 5.27095 5.31656 5.40141 5.43069 5.51107 5.52975 5.55277 5.69182 5.83409 6.32101 6.37485 6.66891 7.11250 7.38606 7.79222 8.43263 9.23598 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.025291 B = 0.001665 C = 0.001616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.851149 B =16812.978663 C =17321.486734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.100 4.100 3 C -0.139 4.139 4 C -0.111 4.111 5 C -0.145 4.145 6 C 0.101 3.899 7 H 0.040 0.960 8 C -0.127 4.127 9 C 0.504 3.496 10 O -0.583 6.583 11 N -0.720 5.720 12 C 0.124 3.876 13 C -0.098 4.098 14 C -0.085 4.085 15 H 0.076 0.924 16 C -0.121 4.121 17 C 0.148 3.852 18 N -0.629 5.629 19 C -0.243 4.243 20 H 0.076 0.924 21 C -0.068 4.068 22 N -0.948 5.948 23 Si 0.981 3.019 24 H -0.281 1.281 25 H -0.290 1.290 26 H -0.275 1.275 27 C 0.135 3.865 28 O -0.388 6.388 29 C 0.070 3.930 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.058 0.942 34 H 0.053 0.947 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.058 0.942 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.123 0.877 41 H 0.140 0.860 42 H 0.417 0.583 43 H 0.044 0.956 44 H 0.053 0.947 45 H 0.098 0.902 46 H 0.076 0.924 47 H 0.086 0.914 48 H 0.069 0.931 49 H 0.072 0.928 50 H -0.018 1.018 51 H 0.247 0.753 52 H 0.026 0.974 53 H 0.007 0.993 54 H 0.036 0.964 55 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.670 25.130 -18.441 34.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.100 4.100 3 C -0.196 4.196 4 C -0.149 4.149 5 C -0.182 4.182 6 C 0.042 3.958 7 H 0.058 0.942 8 C -0.166 4.166 9 C 0.291 3.709 10 O -0.463 6.463 11 N -0.373 5.373 12 C 0.000 4.000 13 C -0.136 4.136 14 C -0.105 4.105 15 H 0.094 0.906 16 C -0.159 4.159 17 C 0.024 3.976 18 N -0.355 5.355 19 C -0.373 4.373 20 H 0.093 0.907 21 C -0.260 4.260 22 N -0.597 5.597 23 Si 0.809 3.191 24 H -0.208 1.208 25 H -0.216 1.216 26 H -0.201 1.201 27 C 0.010 3.990 28 O -0.308 6.308 29 C -0.007 4.007 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.076 0.924 38 H 0.110 0.890 39 H 0.103 0.897 40 H 0.141 0.859 41 H 0.158 0.842 42 H 0.255 0.745 43 H 0.062 0.938 44 H 0.072 0.928 45 H 0.116 0.884 46 H 0.095 0.905 47 H 0.104 0.896 48 H 0.088 0.912 49 H 0.090 0.910 50 H 0.000 1.000 51 H 0.057 0.943 52 H 0.044 0.956 53 H 0.025 0.975 54 H 0.054 0.946 55 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.142 25.307 -17.721 33.978 hybrid contribution 1.356 -0.657 0.448 1.572 sum -12.786 24.650 -17.274 32.703 Atomic orbital electron populations 1.21778 0.93341 1.02056 1.01823 1.21204 0.97184 0.96182 0.95460 1.21783 1.00892 0.94279 1.02633 1.21697 1.00526 0.95041 0.97625 1.22262 1.02765 0.96302 0.96892 1.21867 0.96931 0.90311 0.86647 0.94212 1.21828 1.03918 0.94094 0.96787 1.21292 0.80684 0.81541 0.87334 1.90713 1.38290 1.64873 1.52418 1.45939 1.49800 1.12606 1.28935 1.21205 0.97427 0.93203 0.88153 1.21614 1.01756 0.92679 0.97520 1.22020 0.93310 0.96335 0.98836 0.90609 1.22873 0.97884 0.94484 1.00652 1.21772 0.84174 0.98908 0.92786 1.44856 1.04513 1.16173 1.69928 1.19417 0.85405 0.99446 1.32990 0.90652 1.25648 1.01650 0.97733 1.00991 1.70052 1.30207 1.13350 1.46130 0.85119 0.79012 0.77105 0.77885 1.20764 1.21577 1.20131 1.21544 0.95017 0.86647 0.95820 1.87927 1.73610 1.22756 1.46459 1.22647 0.97741 0.81894 0.98373 0.91665 0.92493 0.93074 0.92318 0.92808 0.91253 0.89858 0.92367 0.88980 0.89747 0.85938 0.84231 0.74535 0.93783 0.92813 0.88365 0.90544 0.89566 0.91208 0.90980 0.99998 0.94287 0.95631 0.97455 0.94587 0.89401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.53 8.08 71.98 0.58 -0.95 16 2 C -0.10 -1.26 0.77 -52.09 -0.04 -1.30 16 3 C -0.14 -1.42 8.49 71.98 0.61 -0.81 16 4 C -0.11 -1.22 4.82 30.76 0.15 -1.07 16 5 C -0.14 -1.53 5.06 30.73 0.16 -1.37 16 6 C 0.10 1.75 2.19 30.63 0.07 1.82 16 7 H 0.04 0.87 7.96 -2.39 -0.02 0.86 16 8 C -0.13 -1.75 5.41 29.85 0.16 -1.59 16 9 C 0.50 11.86 7.71 87.65 0.68 12.54 16 10 O -0.58 -20.22 15.42 10.74 0.17 -20.05 16 11 N -0.72 -14.12 5.56 -463.07 -2.57 -16.69 16 12 C 0.12 3.17 5.52 86.38 0.48 3.64 16 13 C -0.10 -2.26 4.72 30.59 0.14 -2.12 16 14 C -0.09 -2.81 2.98 -9.61 -0.03 -2.83 16 15 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 16 C -0.12 -4.31 6.53 31.99 0.21 -4.11 16 17 C 0.15 7.50 5.89 86.86 0.51 8.02 16 18 N -0.63 -33.88 3.39 -692.01 -2.35 -36.23 16 19 C -0.24 -14.29 10.27 84.03 0.86 -13.43 16 20 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 21 C -0.07 -3.97 5.49 84.86 0.47 -3.50 16 22 N -0.95 -57.74 10.09 21.65 0.22 -57.52 16 23 Si 0.98 46.93 29.55 68.60 2.03 48.95 16 24 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 25 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 26 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 27 C 0.13 5.81 5.99 86.73 0.52 6.33 16 28 O -0.39 -8.81 9.06 -135.21 -1.23 -10.03 16 29 C 0.07 1.31 5.54 72.01 0.40 1.70 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.06 0.74 6.13 -2.39 -0.01 0.72 16 32 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 34 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.08 0.77 6.62 -2.39 -0.02 0.76 16 40 H 0.12 1.20 8.14 -2.38 -0.02 1.18 16 41 H 0.14 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.42 4.87 8.47 -92.71 -0.79 4.08 16 43 H 0.04 1.36 7.49 -2.39 -0.02 1.35 16 44 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 45 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.08 1.73 8.06 -2.39 -0.02 1.71 16 47 H 0.09 2.60 8.14 -2.39 -0.02 2.59 16 48 H 0.07 2.38 8.05 -2.39 -0.02 2.36 16 49 H 0.07 4.12 5.87 -2.39 -0.01 4.11 16 50 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 51 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 52 H 0.03 1.08 7.76 -2.38 -0.02 1.06 16 53 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 54 H 0.04 0.73 8.14 -2.38 -0.02 0.71 16 55 H 0.09 1.58 8.14 -2.38 -0.02 1.57 16 Total: -1.00 -78.45 418.96 2.24 -76.22 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: 0.05 Total: 14.39 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: 5.92 Total: 0.97 kcal Atomic # 7 Polarization: -105.74 SS G_CDS: -4.70 Total: -110.44 kcal Atomic # 8 Polarization: -29.03 SS G_CDS: -1.06 Total: -30.09 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.95 kcal Total: -78.45 2.24 -76.22 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267551176.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.315 kcal (2) G-P(sol) polarization free energy of solvation -78.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds