Wall clock time and date at job start Tue Mar 31 2020 21:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00455 * 2 1 4 4 H 1.48506 * 109.46719 * 270.00189 * 3 2 1 5 5 H 1.48501 * 109.46793 * 29.99844 * 3 2 1 6 6 H 1.48489 * 109.47333 * 150.00088 * 3 2 1 7 7 C 1.38811 * 119.99400 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00530 * 0.02562 * 7 2 1 9 9 N 1.36943 * 119.99622 * 179.72313 * 7 2 1 10 10 C 1.46504 * 119.99781 * 180.27904 * 9 7 2 11 11 C 1.52996 * 109.46681 * 180.02562 * 10 9 7 12 12 C 1.53009 * 109.46924 * 179.97438 * 11 10 9 13 13 H 1.08998 * 109.49108 * 304.93302 * 12 11 10 14 14 C 1.53038 * 109.49686 * 64.99692 * 12 11 10 15 15 C 1.53047 * 109.53531 * 181.32055 * 14 12 11 16 16 C 1.53195 * 109.30768 * 298.63343 * 15 14 12 17 17 N 1.46923 * 108.77556 * 54.63876 * 16 15 14 18 18 C 1.34779 * 120.62909 * 126.36967 * 17 16 15 19 19 O 1.21280 * 119.99703 * 180.02562 * 18 17 16 20 20 C 1.50695 * 119.99863 * 359.97438 * 18 17 16 21 21 C 1.53005 * 109.46987 * 180.02562 * 20 18 17 22 22 C 1.53002 * 109.47094 * 179.97438 * 21 20 18 23 23 H 1.09000 * 109.48089 * 55.02660 * 22 21 20 24 24 C 1.53095 * 109.47712 * 175.06074 * 22 21 20 25 25 C 1.53179 * 109.16086 * 177.59386 * 24 22 21 26 26 C 1.53178 * 109.03642 * 303.01626 * 25 24 22 27 27 C 1.53094 * 109.16186 * 56.98167 * 26 25 24 28 28 O 1.42902 * 109.41686 * 302.39224 * 27 26 25 29 29 C 1.46925 * 118.74138 * 306.38510 * 17 16 15 30 30 H 0.97009 * 119.99492 * 0.02562 * 1 2 3 31 31 H 0.97000 * 119.99808 * 0.27579 * 9 7 2 32 32 H 1.09006 * 109.46810 * 299.99903 * 10 9 7 33 33 H 1.08997 * 109.47198 * 60.00005 * 10 9 7 34 34 H 1.08998 * 109.47328 * 299.99667 * 11 10 9 35 35 H 1.08997 * 109.47540 * 59.99921 * 11 10 9 36 36 H 1.09003 * 109.46337 * 301.33666 * 14 12 11 37 37 H 1.08997 * 109.46445 * 61.29717 * 14 12 11 38 38 H 1.08999 * 109.49797 * 58.58732 * 15 14 12 39 39 H 1.09003 * 109.49239 * 178.68535 * 15 14 12 40 40 H 1.09004 * 109.58107 * 174.42547 * 16 15 14 41 41 H 1.09002 * 109.58696 * 294.70019 * 16 15 14 42 42 H 1.09001 * 109.47513 * 300.00176 * 20 18 17 43 43 H 1.09001 * 109.47604 * 60.00430 * 20 18 17 44 44 H 1.08991 * 109.47139 * 300.00294 * 21 20 18 45 45 H 1.09000 * 109.46920 * 60.00507 * 21 20 18 46 46 H 1.08997 * 109.51968 * 297.49428 * 24 22 21 47 47 H 1.08990 * 109.52694 * 57.68781 * 24 22 21 48 48 H 1.08996 * 109.54619 * 183.15208 * 25 24 22 49 49 H 1.09002 * 109.61931 * 62.92804 * 25 24 22 50 50 H 1.09004 * 109.52528 * 297.07819 * 26 25 24 51 51 H 1.08995 * 109.52411 * 176.88550 * 26 25 24 52 52 H 1.09008 * 109.48247 * 182.40932 * 27 26 25 53 53 H 1.08998 * 109.49271 * 62.37937 * 27 26 25 54 54 H 1.08998 * 109.58805 * 293.82771 * 29 17 16 55 55 H 1.08994 * 109.58951 * 173.39576 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0463 -1.4002 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4701 -2.1375 0.0005 9 7 3.3796 -1.2023 -0.0052 10 6 4.1120 -2.4711 -0.0108 11 6 5.6162 -2.1915 -0.0159 12 6 6.3811 -3.5167 -0.0211 13 1 6.0565 -4.1273 0.8214 14 6 6.1036 -4.2615 -1.3289 15 6 6.8421 -5.6020 -1.3210 16 6 8.3496 -5.3492 -1.2191 17 7 8.6098 -4.5100 -0.0415 18 6 9.4978 -4.8977 0.8954 19 8 9.7033 -4.1963 1.8631 20 6 10.2342 -6.2034 0.7409 21 6 11.1734 -6.4032 1.9321 22 6 11.9207 -7.7291 1.7756 23 1 12.4310 -7.7473 0.8126 24 6 12.9486 -7.8717 2.9012 25 6 13.6501 -9.2273 2.7727 26 6 12.5973 -10.3395 2.8026 27 6 11.5829 -10.1016 1.6809 28 8 10.9900 -8.8115 1.8424 29 6 7.8834 -3.2402 0.0956 30 1 -0.4850 0.8402 -0.0004 31 1 3.8646 -0.3622 -0.0056 32 1 3.8523 -3.0444 0.8792 33 1 3.8449 -3.0408 -0.9008 34 1 5.8762 -1.6180 -0.9056 35 1 5.8829 -1.6220 0.8743 36 1 5.0323 -4.4378 -1.4261 37 1 6.4503 -3.6608 -2.1696 38 1 6.5137 -6.1933 -0.4662 39 1 6.6252 -6.1422 -2.2426 40 1 8.8731 -6.2995 -1.1135 41 1 8.6962 -4.8391 -2.1179 42 1 9.5167 -7.0230 0.7029 43 1 10.8152 -6.1860 -0.1812 44 1 11.8909 -5.5836 1.9706 45 1 10.5921 -6.4208 2.8541 46 1 13.6851 -7.0718 2.8253 47 1 12.4436 -7.8129 3.8653 48 1 14.3435 -9.3592 3.6032 49 1 14.1973 -9.2684 1.8308 50 1 12.0851 -10.3305 3.7648 51 1 13.0825 -11.3044 2.6562 52 1 10.8072 -10.8662 1.7241 53 1 12.0887 -10.1510 0.7166 54 1 8.1914 -2.5558 -0.6948 55 1 8.0992 -2.7990 1.0686 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267898431.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:38 Heat of formation + Delta-G solvation = -123.845816 kcal Electronic energy + Delta-G solvation = -29583.956301 eV Core-core repulsion = 25618.768257 eV Total energy + Delta-G solvation = -3965.188043 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -41.34424 -40.30944 -38.97786 -37.07346 -35.17373 -34.79343 -34.51771 -33.36668 -32.62327 -31.17963 -29.42617 -27.18000 -26.16666 -25.49706 -24.61269 -23.38297 -22.99728 -22.38653 -21.26161 -21.06855 -19.83815 -19.53509 -18.18662 -17.49447 -16.97422 -16.80755 -16.61259 -16.43025 -16.00389 -15.91957 -15.53397 -15.38446 -15.18441 -14.93660 -14.79738 -14.67462 -14.57156 -14.21368 -14.20142 -13.67317 -13.61644 -13.56808 -13.15239 -12.99490 -12.98359 -12.78436 -12.42340 -12.34564 -12.16569 -12.13569 -12.06191 -11.96151 -11.84573 -11.82930 -11.66580 -11.56707 -11.55546 -11.27908 -11.16298 -10.95794 -10.75060 -10.31442 -9.61510 -9.30967 -8.05021 -5.38940 1.36736 1.40454 1.48028 1.63234 2.02075 2.46934 2.87353 3.26171 3.47901 3.53512 3.73123 3.78063 3.87226 3.93735 3.98090 4.00826 4.05470 4.11196 4.15699 4.30045 4.33463 4.36010 4.38656 4.45144 4.51574 4.55888 4.61843 4.63559 4.68572 4.75097 4.77384 4.84617 4.86223 4.88578 4.90944 4.94464 5.00973 5.03350 5.10102 5.14289 5.15740 5.20346 5.22093 5.29279 5.30713 5.41982 5.43064 5.50905 5.56775 5.73107 6.19127 6.36949 6.44537 7.05644 7.18424 7.81926 8.01700 9.16480 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.025720 B = 0.001708 C = 0.001680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.366684 B =16385.350598 C =16658.177425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.065 4.065 3 Si 0.959 3.041 4 H -0.274 1.274 5 H -0.294 1.294 6 H -0.254 1.254 7 C -0.240 4.240 8 H 0.054 0.946 9 N -0.761 5.761 10 C 0.155 3.845 11 C -0.112 4.112 12 C -0.085 4.085 13 H 0.058 0.942 14 C -0.118 4.118 15 C -0.131 4.131 16 C 0.104 3.896 17 N -0.611 5.611 18 C 0.506 3.494 19 O -0.592 6.592 20 C -0.126 4.126 21 C -0.094 4.094 22 C 0.095 3.905 23 H 0.077 0.923 24 C -0.153 4.153 25 C -0.122 4.122 26 C -0.158 4.158 27 C 0.055 3.945 28 O -0.400 6.400 29 C 0.119 3.881 30 H 0.259 0.741 31 H 0.366 0.634 32 H 0.012 0.988 33 H 0.033 0.967 34 H 0.076 0.924 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.057 0.943 39 H 0.099 0.901 40 H 0.110 0.890 41 H 0.088 0.912 42 H 0.108 0.892 43 H 0.121 0.879 44 H 0.080 0.920 45 H 0.051 0.949 46 H 0.081 0.919 47 H 0.056 0.944 48 H 0.071 0.929 49 H 0.074 0.926 50 H 0.058 0.942 51 H 0.087 0.913 52 H 0.099 0.901 53 H 0.063 0.937 54 H 0.081 0.919 55 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.134 -22.714 -2.852 41.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.256 4.256 3 Si 0.786 3.214 4 H -0.199 1.199 5 H -0.221 1.221 6 H -0.179 1.179 7 C -0.371 4.371 8 H 0.072 0.928 9 N -0.407 5.407 10 C 0.030 3.970 11 C -0.150 4.150 12 C -0.105 4.105 13 H 0.076 0.924 14 C -0.156 4.156 15 C -0.169 4.169 16 C -0.018 4.018 17 N -0.343 5.343 18 C 0.296 3.704 19 O -0.473 6.473 20 C -0.165 4.165 21 C -0.132 4.132 22 C 0.037 3.963 23 H 0.095 0.905 24 C -0.191 4.191 25 C -0.159 4.159 26 C -0.195 4.195 27 C -0.021 4.021 28 O -0.319 6.319 29 C -0.004 4.004 30 H 0.067 0.933 31 H 0.199 0.801 32 H 0.030 0.970 33 H 0.051 0.949 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.076 0.924 39 H 0.117 0.883 40 H 0.128 0.872 41 H 0.106 0.894 42 H 0.127 0.873 43 H 0.139 0.861 44 H 0.099 0.901 45 H 0.070 0.930 46 H 0.100 0.900 47 H 0.075 0.925 48 H 0.089 0.911 49 H 0.093 0.907 50 H 0.077 0.923 51 H 0.106 0.894 52 H 0.117 0.883 53 H 0.081 0.919 54 H 0.099 0.901 55 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 33.855 -22.446 -2.330 40.687 hybrid contribution -0.312 1.222 0.491 1.354 sum 33.543 -21.224 -1.839 39.737 Atomic orbital electron populations 1.69898 1.07152 1.26780 1.59531 1.25560 0.96208 1.01430 1.02407 0.85351 0.78525 0.79254 0.78315 1.19949 1.22094 1.17851 1.19062 0.82818 0.93527 1.41699 0.92775 1.42764 1.02549 1.04357 1.91006 1.20814 0.91047 0.87193 0.97984 1.21625 0.93328 0.97580 1.02480 1.21302 0.94017 0.95967 0.99243 0.92368 1.21649 1.00815 0.96715 0.96393 1.21917 0.94608 0.96911 1.03461 1.22050 0.96577 0.95918 0.87241 1.48278 1.40636 1.21891 1.23526 1.21423 0.79320 0.88464 0.81177 1.90676 1.66787 1.57480 1.32378 1.21657 0.99689 0.93561 1.01595 1.21325 0.98412 0.95632 0.97813 1.22132 0.89638 0.86100 0.98411 0.90534 1.22214 0.98769 0.98922 0.99207 1.21599 0.97663 0.93622 1.03022 1.22202 0.97652 0.99918 0.99753 1.22719 0.97107 0.84540 0.97724 1.87926 1.35113 1.14979 1.93919 1.21524 0.90470 0.85784 1.02578 0.93261 0.80079 0.96997 0.94864 0.90565 0.92294 0.92144 0.90654 0.92396 0.88270 0.87196 0.89363 0.87348 0.86107 0.90109 0.93020 0.90024 0.92493 0.91072 0.90728 0.92317 0.89420 0.88334 0.91882 0.90103 0.91432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.37 13.97 21.65 0.30 -64.07 16 2 C -0.06 -3.91 5.50 84.86 0.47 -3.45 16 3 Si 0.96 46.53 27.73 68.60 1.90 48.43 16 4 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 5 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 6 H -0.25 -11.23 6.52 99.48 0.65 -10.58 16 7 C -0.24 -14.26 10.47 84.03 0.88 -13.38 16 8 H 0.05 3.52 8.06 -2.91 -0.02 3.49 16 9 N -0.76 -37.12 5.41 -343.44 -1.86 -38.98 16 10 C 0.16 6.10 6.02 86.38 0.52 6.62 16 11 C -0.11 -3.31 4.80 30.60 0.15 -3.16 16 12 C -0.09 -2.08 2.34 -10.71 -0.03 -2.10 16 13 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 14 C -0.12 -2.36 4.95 30.62 0.15 -2.21 16 15 C -0.13 -1.86 6.08 30.68 0.19 -1.67 16 16 C 0.10 1.21 6.34 86.36 0.55 1.76 16 17 N -0.61 -11.85 2.97 -818.92 -2.43 -14.29 16 18 C 0.51 11.30 7.70 87.66 0.67 11.97 16 19 O -0.59 -18.76 15.39 -3.03 -0.05 -18.81 16 20 C -0.13 -1.76 3.94 29.85 0.12 -1.65 16 21 C -0.09 -1.51 4.21 30.60 0.13 -1.38 16 22 C 0.09 1.16 2.64 30.63 0.08 1.24 16 23 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 24 C -0.15 -1.74 5.42 30.69 0.17 -1.58 16 25 C -0.12 -1.02 6.03 30.71 0.19 -0.83 16 26 C -0.16 -1.35 6.14 30.69 0.19 -1.16 16 27 C 0.06 0.52 6.84 72.01 0.49 1.02 16 28 O -0.40 -5.95 9.94 -148.98 -1.48 -7.43 16 29 C 0.12 2.73 5.72 86.36 0.49 3.22 16 30 H 0.26 16.05 8.31 -92.70 -0.77 15.28 16 31 H 0.37 16.89 5.53 -92.71 -0.51 16.38 16 32 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 33 H 0.03 1.29 6.54 -2.39 -0.02 1.28 16 34 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.06 1.41 6.51 -2.39 -0.02 1.40 16 37 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.11 0.76 5.93 -2.38 -0.01 0.74 16 41 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.11 1.41 7.37 -2.39 -0.02 1.39 16 43 H 0.12 0.96 7.94 -2.39 -0.02 0.94 16 44 H 0.08 1.32 8.10 -2.39 -0.02 1.31 16 45 H 0.05 1.11 8.10 -2.39 -0.02 1.09 16 46 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 47 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 49 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 50 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 51 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 52 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 53 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 54 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 55 H 0.07 1.89 7.00 -2.39 -0.02 1.87 16 Total: -1.00 -78.10 417.25 2.06 -76.04 By element: Atomic # 1 Polarization: 25.57 SS G_CDS: 0.27 Total: 25.83 kcal Atomic # 6 Polarization: -12.14 SS G_CDS: 5.40 Total: -6.74 kcal Atomic # 7 Polarization: -113.34 SS G_CDS: -3.99 Total: -117.33 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: -1.53 Total: -26.24 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 1.90 Total: 48.43 kcal Total: -78.10 2.06 -76.04 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267898431.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.801 kcal (2) G-P(sol) polarization free energy of solvation -78.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds