Wall clock time and date at job start Tue Mar 31 2020 21:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 119.99741 * 2 1 4 4 H 1.48499 * 109.47195 * 239.99746 * 3 2 1 5 5 H 1.48506 * 109.47064 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46974 * 119.99860 * 3 2 1 7 7 C 1.38814 * 120.00164 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99684 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00175 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00002 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46840 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47060 * 180.02562 * 11 10 9 13 13 H 1.09001 * 109.49806 * 54.93245 * 12 11 10 14 14 C 1.53042 * 109.49694 * 294.84205 * 12 11 10 15 15 C 1.53045 * 109.53740 * 178.68170 * 14 12 11 16 16 C 1.53193 * 109.31125 * 61.36506 * 15 14 12 17 17 N 1.46921 * 108.77614 * 305.36270 * 16 15 14 18 18 C 1.34784 * 120.63400 * 233.58739 * 17 16 15 19 19 O 1.21279 * 120.00181 * 180.02562 * 18 17 16 20 20 C 1.50697 * 119.99398 * 0.02663 * 18 17 16 21 21 C 1.53004 * 109.46694 * 179.97438 * 20 18 17 22 22 C 1.53000 * 109.46985 * 179.97438 * 21 20 18 23 23 H 1.09001 * 109.48252 * 55.00011 * 22 21 20 24 24 C 1.53096 * 109.48102 * 175.02447 * 22 21 20 25 25 C 1.53177 * 109.16421 * 177.59288 * 24 22 21 26 26 C 1.53179 * 109.03208 * 303.01600 * 25 24 22 27 27 C 1.53092 * 109.16494 * 56.98702 * 26 25 24 28 28 O 1.42901 * 109.41816 * 302.39285 * 27 26 25 29 29 C 1.46928 * 118.73926 * 53.60875 * 17 16 15 30 30 H 0.96993 * 120.00311 * 359.97438 * 1 2 3 31 31 H 0.97005 * 119.99550 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.46813 * 60.00266 * 10 9 7 33 33 H 1.08992 * 109.47397 * 300.00328 * 10 9 7 34 34 H 1.09002 * 109.47398 * 300.00326 * 11 10 9 35 35 H 1.09001 * 109.47194 * 60.00507 * 11 10 9 36 36 H 1.09000 * 109.46166 * 298.70163 * 14 12 11 37 37 H 1.08997 * 109.46305 * 58.66182 * 14 12 11 38 38 H 1.09005 * 109.49602 * 301.41291 * 15 14 12 39 39 H 1.08997 * 109.49925 * 181.31473 * 15 14 12 40 40 H 1.09003 * 109.58638 * 185.57565 * 16 15 14 41 41 H 1.08999 * 109.70291 * 65.22294 * 16 15 14 42 42 H 1.09005 * 109.47036 * 299.99221 * 20 18 17 43 43 H 1.08994 * 109.47862 * 59.99925 * 20 18 17 44 44 H 1.08993 * 109.47353 * 299.99765 * 21 20 18 45 45 H 1.09004 * 109.46755 * 60.00089 * 21 20 18 46 46 H 1.08999 * 109.52074 * 297.50299 * 24 22 21 47 47 H 1.09001 * 109.52197 * 57.68666 * 24 22 21 48 48 H 1.08998 * 109.54479 * 62.88729 * 25 24 22 49 49 H 1.09004 * 109.54057 * 183.06608 * 25 24 22 50 50 H 1.09007 * 109.51587 * 176.88420 * 26 25 24 51 51 H 1.08990 * 109.52804 * 297.07249 * 26 25 24 52 52 H 1.08998 * 109.47967 * 62.36611 * 27 26 25 53 53 H 1.08996 * 109.48009 * 182.39362 * 27 26 25 54 54 H 1.08998 * 109.58811 * 186.60628 * 29 17 16 55 55 H 1.09002 * 109.69960 * 66.25035 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2850 2.7465 0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3881 -0.0005 10 6 2.0583 -3.6568 -0.0005 11 6 1.0640 -4.8197 0.0001 12 6 1.8290 -6.1447 0.0008 13 1 2.5222 -6.1641 0.8417 14 6 2.6093 -6.2846 -1.3084 15 6 3.4009 -7.5944 -1.2949 16 6 2.4285 -8.7729 -1.1832 17 7 1.5749 -8.5716 -0.0044 18 6 1.4687 -9.5291 0.9382 19 8 0.7604 -9.3510 1.9064 20 6 2.2300 -10.8210 0.7889 21 6 1.9361 -11.7274 1.9860 22 6 2.7086 -13.0393 1.8341 23 1 3.7689 -12.8237 1.7023 24 6 2.5137 -13.8948 3.0887 25 6 3.2401 -15.2307 2.9043 26 6 2.7081 -15.9186 1.6433 27 6 2.8956 -14.9851 0.4445 28 8 2.2215 -13.7500 0.6941 29 6 0.8390 -7.3068 0.1272 30 1 -0.4850 0.8400 0.0004 31 1 0.3556 -2.3881 -0.0005 32 1 2.6849 -3.7144 0.8895 33 1 2.6849 -3.7145 -0.8904 34 1 0.4376 -4.7618 0.8903 35 1 0.4371 -4.7622 -0.8897 36 1 1.9132 -6.2896 -2.1472 37 1 3.2972 -5.4457 -1.4126 38 1 4.0796 -7.6005 -0.4420 39 1 3.9745 -7.6823 -2.2175 40 1 2.9900 -9.7008 -1.0736 41 1 1.8090 -8.8243 -2.0785 42 1 1.9217 -11.3204 -0.1297 43 1 3.2986 -10.6104 0.7468 44 1 2.2447 -11.2279 2.9043 45 1 0.8675 -11.9382 2.0284 46 1 2.9247 -13.3729 3.9529 47 1 1.4502 -14.0768 3.2439 48 1 4.3101 -15.0524 2.7987 49 1 3.0601 -15.8663 3.7714 50 1 3.2584 -16.8442 1.4737 51 1 1.6487 -16.1415 1.7693 52 1 3.9583 -14.7951 0.2945 53 1 2.4802 -15.4522 -0.4484 54 1 0.3516 -7.2672 1.1014 55 1 0.0885 -7.2347 -0.6600 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267898432.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:48 Heat of formation + Delta-G solvation = -126.648129 kcal Electronic energy + Delta-G solvation = -29468.082549 eV Core-core repulsion = 25502.772989 eV Total energy + Delta-G solvation = -3965.309561 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.34421 -40.30467 -38.95713 -36.93102 -35.16402 -34.78605 -34.51182 -33.16180 -32.45714 -31.11607 -29.15713 -27.16906 -26.17236 -25.63952 -24.65990 -23.50906 -22.96512 -22.33343 -21.22681 -21.04620 -19.76931 -19.11678 -18.17290 -17.49770 -16.97966 -16.84405 -16.56560 -16.41581 -15.99882 -15.67007 -15.55135 -15.37255 -15.30233 -14.99130 -14.73392 -14.67156 -14.52500 -14.18356 -14.07501 -13.66169 -13.57444 -13.33564 -13.03341 -12.96523 -12.87893 -12.74572 -12.43342 -12.40275 -12.16031 -12.14834 -12.06026 -11.95331 -11.84529 -11.80674 -11.67375 -11.55952 -11.52436 -11.26187 -11.16037 -10.90999 -10.74835 -10.31089 -9.61642 -9.01162 -7.96108 -5.25853 1.46216 1.50138 1.56379 1.63673 2.01078 2.55635 2.87282 3.37028 3.47931 3.69865 3.73689 3.79738 3.89663 3.94743 3.98693 4.06278 4.07770 4.15619 4.16843 4.30475 4.35868 4.37106 4.37541 4.47931 4.54175 4.58385 4.62935 4.65927 4.69738 4.77076 4.77740 4.85869 4.87209 4.88719 4.91338 4.95060 5.00976 5.04778 5.10491 5.14887 5.16653 5.20640 5.23882 5.29591 5.32937 5.42201 5.44283 5.46878 5.52170 5.56707 6.25944 6.36794 6.44974 7.18417 7.31563 8.08035 8.31315 9.27394 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.031615 B = 0.001593 C = 0.001569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.449838 B =17573.143544 C =17842.635027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.077 4.077 3 Si 0.977 3.023 4 H -0.275 1.275 5 H -0.294 1.294 6 H -0.278 1.278 7 C -0.251 4.251 8 H 0.076 0.924 9 N -0.750 5.750 10 C 0.155 3.845 11 C -0.108 4.108 12 C -0.082 4.082 13 H 0.062 0.938 14 C -0.118 4.118 15 C -0.128 4.128 16 C 0.102 3.898 17 N -0.611 5.611 18 C 0.505 3.495 19 O -0.593 6.593 20 C -0.125 4.125 21 C -0.094 4.094 22 C 0.095 3.905 23 H 0.075 0.925 24 C -0.154 4.154 25 C -0.122 4.122 26 C -0.157 4.157 27 C 0.055 3.945 28 O -0.398 6.398 29 C 0.119 3.881 30 H 0.252 0.748 31 H 0.373 0.627 32 H 0.010 0.990 33 H 0.030 0.970 34 H 0.050 0.950 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.100 0.900 40 H 0.113 0.887 41 H 0.082 0.918 42 H 0.113 0.887 43 H 0.117 0.883 44 H 0.077 0.923 45 H 0.054 0.946 46 H 0.079 0.921 47 H 0.058 0.942 48 H 0.072 0.928 49 H 0.071 0.929 50 H 0.087 0.913 51 H 0.060 0.940 52 H 0.061 0.939 53 H 0.101 0.899 54 H 0.066 0.934 55 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.786 -36.467 -1.893 38.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.269 4.269 3 Si 0.805 3.195 4 H -0.201 1.201 5 H -0.220 1.220 6 H -0.204 1.204 7 C -0.383 4.383 8 H 0.094 0.906 9 N -0.392 5.392 10 C 0.029 3.971 11 C -0.146 4.146 12 C -0.102 4.102 13 H 0.081 0.919 14 C -0.155 4.155 15 C -0.166 4.166 16 C -0.019 4.019 17 N -0.343 5.343 18 C 0.296 3.704 19 O -0.474 6.474 20 C -0.164 4.164 21 C -0.132 4.132 22 C 0.038 3.962 23 H 0.092 0.908 24 C -0.191 4.191 25 C -0.160 4.160 26 C -0.194 4.194 27 C -0.021 4.021 28 O -0.317 6.317 29 C -0.004 4.004 30 H 0.060 0.940 31 H 0.204 0.796 32 H 0.028 0.972 33 H 0.048 0.952 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.119 0.881 40 H 0.131 0.869 41 H 0.101 0.899 42 H 0.131 0.869 43 H 0.135 0.865 44 H 0.095 0.905 45 H 0.073 0.927 46 H 0.097 0.903 47 H 0.077 0.923 48 H 0.091 0.909 49 H 0.089 0.911 50 H 0.106 0.894 51 H 0.078 0.922 52 H 0.080 0.920 53 H 0.119 0.881 54 H 0.084 0.916 55 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 10.432 -36.222 -1.518 37.725 hybrid contribution -0.332 1.323 0.508 1.455 sum 10.101 -34.899 -1.011 36.345 Atomic orbital electron populations 1.69820 1.06712 1.26235 1.59326 1.25633 0.96457 1.01299 1.03497 0.85161 0.77189 0.78825 0.78275 1.20059 1.21990 1.20436 1.19637 0.91548 0.85457 1.41633 0.90641 1.42630 1.05656 1.01438 1.89488 1.20814 0.94104 0.84696 0.97525 1.21562 0.97972 0.93420 1.01678 1.21281 0.96997 0.92509 0.99390 0.91933 1.21642 0.99213 0.98535 0.96129 1.21909 0.97660 0.93317 1.03726 1.22067 0.92677 1.00097 0.87051 1.48280 1.46805 1.15930 1.23277 1.21459 0.81482 0.86292 0.81192 1.90677 1.42745 1.81310 1.32665 1.21655 1.01789 0.91093 1.01869 1.21320 1.00691 0.93246 0.97931 1.22107 0.97744 0.90622 0.85737 0.90760 1.22216 1.01363 0.97133 0.98419 1.21602 1.00192 0.95826 0.98343 1.22196 1.01962 0.99648 0.95642 1.22723 0.97448 0.83910 0.98019 1.87915 1.61822 1.34900 1.47100 1.21494 0.94031 0.82556 1.02327 0.93951 0.79588 0.97154 0.95193 0.93105 0.91654 0.91250 0.91855 0.91763 0.88133 0.86922 0.89935 0.86867 0.86457 0.90486 0.92672 0.90269 0.92305 0.90901 0.91061 0.89423 0.92151 0.92037 0.88096 0.91588 0.90769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.96 13.06 21.65 0.28 -60.68 16 2 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 3 Si 0.98 46.93 29.55 68.60 2.03 48.96 16 4 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 5 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 6 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 7 C -0.25 -14.54 9.99 84.03 0.84 -13.70 16 8 H 0.08 4.17 7.83 -2.91 -0.02 4.14 16 9 N -0.75 -39.98 5.60 -343.46 -1.92 -41.90 16 10 C 0.15 6.41 6.02 86.38 0.52 6.93 16 11 C -0.11 -3.61 4.80 30.59 0.15 -3.46 16 12 C -0.08 -2.15 2.34 -10.72 -0.03 -2.17 16 13 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 14 C -0.12 -2.49 4.96 30.62 0.15 -2.33 16 15 C -0.13 -1.82 6.08 30.67 0.19 -1.63 16 16 C 0.10 1.32 6.34 86.36 0.55 1.87 16 17 N -0.61 -12.83 2.97 -818.91 -2.43 -15.26 16 18 C 0.51 11.94 7.70 87.66 0.67 12.61 16 19 O -0.59 -19.69 15.40 -3.03 -0.05 -19.73 16 20 C -0.12 -1.85 3.94 29.85 0.12 -1.73 16 21 C -0.09 -1.57 4.21 30.60 0.13 -1.45 16 22 C 0.10 1.21 2.64 30.63 0.08 1.29 16 23 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 24 C -0.15 -1.83 5.42 30.69 0.17 -1.66 16 25 C -0.12 -1.07 6.03 30.71 0.19 -0.88 16 26 C -0.16 -1.31 6.14 30.68 0.19 -1.12 16 27 C 0.06 0.51 6.84 72.01 0.49 1.00 16 28 O -0.40 -5.78 9.94 -148.98 -1.48 -7.26 16 29 C 0.12 3.03 5.72 86.36 0.49 3.52 16 30 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 31 H 0.37 21.10 7.67 -92.70 -0.71 20.39 16 32 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.03 1.20 6.54 -2.39 -0.02 1.19 16 34 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.06 1.50 6.51 -2.39 -0.02 1.49 16 38 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 39 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.11 0.83 5.93 -2.39 -0.01 0.82 16 41 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.11 1.42 7.62 -2.38 -0.02 1.40 16 43 H 0.12 1.13 7.69 -2.39 -0.02 1.11 16 44 H 0.08 1.39 8.10 -2.39 -0.02 1.37 16 45 H 0.05 1.18 8.10 -2.38 -0.02 1.16 16 46 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 47 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 49 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 50 H 0.09 0.46 8.14 -2.38 -0.02 0.44 16 51 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 52 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 53 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 54 H 0.07 2.03 7.01 -2.39 -0.02 2.02 16 55 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -74.97 420.38 1.92 -73.05 By element: Atomic # 1 Polarization: 29.66 SS G_CDS: 0.13 Total: 29.79 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: 5.36 Total: -6.97 kcal Atomic # 7 Polarization: -113.77 SS G_CDS: -4.08 Total: -117.84 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: -1.53 Total: -26.99 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.96 kcal Total: -74.97 1.92 -73.05 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267898432.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.594 kcal (2) G-P(sol) polarization free energy of solvation -74.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds