Wall clock time and date at job start Tue Mar 31 2020 22:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46506 * 109.45800 * 2 1 4 4 C 1.34772 * 119.99995 * 299.96834 * 3 2 1 5 5 O 1.21283 * 119.99671 * 0.02562 * 4 3 2 6 6 C 1.50694 * 120.00175 * 180.02562 * 4 3 2 7 7 C 1.53004 * 109.47324 * 180.02562 * 6 4 3 8 8 C 1.52996 * 109.47409 * 179.97438 * 7 6 4 9 9 C 1.52995 * 109.47439 * 179.97438 * 8 7 6 10 10 C 1.53180 * 109.54558 * 294.56038 * 9 8 7 11 11 C 1.53092 * 109.16222 * 183.14911 * 10 9 8 12 12 O 1.42904 * 109.41596 * 57.60934 * 11 10 9 13 13 C 1.42902 * 114.09381 * 298.83920 * 12 11 10 14 14 C 1.53097 * 109.41686 * 61.16020 * 13 12 11 15 15 C 1.53046 * 109.46072 * 119.97020 * 2 1 3 16 16 C 1.53192 * 109.33981 * 181.37247 * 15 2 1 17 17 N 1.46938 * 108.77026 * 305.41317 * 16 15 2 18 18 C 1.36930 * 120.60307 * 233.57630 * 17 16 15 19 19 H 1.07996 * 120.00394 * 27.66273 * 18 17 16 20 20 C 1.38816 * 120.00154 * 207.65921 * 18 17 16 21 21 N 1.31623 * 119.99748 * 17.35845 * 20 18 17 22 22 Si 1.86801 * 120.00255 * 197.36421 * 20 18 17 23 23 H 1.48496 * 109.47323 * 89.99826 * 22 20 18 24 24 H 1.48501 * 109.46818 * 209.99924 * 22 20 18 25 25 H 1.48500 * 109.46759 * 329.99662 * 22 20 18 26 26 C 1.46921 * 118.76297 * 53.55544 * 17 16 15 27 27 C 1.53037 * 109.46245 * 240.04089 * 2 1 3 28 28 H 1.09001 * 109.47055 * 300.02692 * 1 2 3 29 29 H 1.08994 * 109.47133 * 60.03075 * 1 2 3 30 30 H 1.09002 * 109.47070 * 180.02562 * 1 2 3 31 31 H 0.96996 * 119.99817 * 119.97621 * 3 2 1 32 32 H 1.09000 * 109.47563 * 300.00049 * 6 4 3 33 33 H 1.08999 * 109.47462 * 60.00444 * 6 4 3 34 34 H 1.09000 * 109.47179 * 300.00571 * 7 6 4 35 35 H 1.09006 * 109.46994 * 59.99849 * 7 6 4 36 36 H 1.08999 * 109.46921 * 300.00323 * 8 7 6 37 37 H 1.09006 * 109.47148 * 59.99965 * 8 7 6 38 38 H 1.09009 * 109.53757 * 54.82389 * 9 8 7 39 39 H 1.08998 * 109.51837 * 303.05300 * 10 9 8 40 40 H 1.09002 * 109.52264 * 63.24394 * 10 9 8 41 41 H 1.09002 * 109.48334 * 297.62514 * 11 10 9 42 42 H 1.09002 * 109.48042 * 177.59038 * 11 10 9 43 43 H 1.09000 * 109.48579 * 301.17470 * 13 12 11 44 44 H 1.09001 * 109.49014 * 181.14910 * 13 12 11 45 45 H 1.09001 * 109.52102 * 182.48433 * 14 13 12 46 46 H 1.08999 * 109.51977 * 62.29244 * 14 13 12 47 47 H 1.09000 * 109.49625 * 301.33659 * 15 2 1 48 48 H 1.08999 * 109.49769 * 61.40275 * 15 2 1 49 49 H 1.08999 * 109.58731 * 65.16609 * 16 15 2 50 50 H 1.08997 * 109.58721 * 185.59092 * 16 15 2 51 51 H 0.96998 * 119.99441 * 180.02562 * 21 20 18 52 52 H 1.09001 * 109.58442 * 186.62455 * 26 17 16 53 53 H 1.09003 * 109.70657 * 66.26825 * 26 17 16 54 54 H 1.09001 * 109.49590 * 298.56419 * 27 2 1 55 55 H 1.08997 * 109.50136 * 58.62947 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0180 1.3814 0.0000 4 6 1.6927 2.2110 -1.0111 5 8 0.9956 1.8140 -1.9208 6 6 2.1952 3.6317 -1.0114 7 6 1.6850 4.3528 -2.2607 8 6 2.1946 5.7954 -2.2608 9 6 1.6850 6.5164 -3.5103 10 6 2.3041 5.8789 -4.7580 11 6 1.8507 6.6558 -5.9968 12 8 2.2305 8.0269 -5.8630 13 6 1.6438 8.6879 -4.7400 14 6 2.0889 7.9927 -3.4507 15 6 2.0398 -0.7209 1.2501 16 6 3.5714 -0.6893 1.2647 17 7 4.0679 -1.2488 0.0000 18 6 4.9761 -2.2735 -0.0001 19 1 5.0091 -2.9659 0.8280 20 6 5.8544 -2.4226 -1.0647 21 7 6.0604 -1.4206 -1.8930 22 14 6.7439 -4.0450 -1.3217 23 1 5.9267 -4.9245 -2.1955 24 1 8.0586 -3.7922 -1.9643 25 1 6.9536 -4.7077 -0.0094 26 6 3.5714 -0.6884 -1.2642 27 6 2.0399 -0.7206 -1.2501 28 1 -0.3633 0.5143 0.8898 29 1 -0.3633 0.5133 -0.8902 30 1 -0.3633 -1.0277 0.0005 31 1 2.5753 1.6988 0.7277 32 1 1.8317 4.1459 -0.1217 33 1 3.2852 3.6317 -1.0113 34 1 2.0481 3.8388 -3.1507 35 1 0.5950 4.3529 -2.2605 36 1 1.8311 6.3091 -1.3708 37 1 3.2847 5.7957 -2.2607 38 1 0.5989 6.4371 -3.5594 39 1 3.3910 5.9139 -4.6837 40 1 1.9766 4.8423 -4.8381 41 1 0.7671 6.5865 -6.0930 42 1 2.3223 6.2329 -6.8839 43 1 0.5576 8.6452 -4.8197 44 1 1.9662 9.7290 -4.7216 45 1 1.6076 8.4678 -2.5959 46 1 3.1715 8.0703 -3.3501 47 1 1.6572 -0.2209 2.1398 48 1 1.6973 -1.7556 1.2385 49 1 3.9147 0.3400 1.3681 50 1 3.9412 -1.2856 2.0988 51 1 6.6739 -1.5249 -2.6371 52 1 3.9417 -1.2843 -2.0984 53 1 3.9142 0.3409 -1.3698 54 1 1.6978 -1.7555 -1.2384 55 1 1.6568 -0.2209 -2.1398 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270231673.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:52 Heat of formation + Delta-G solvation = -110.992737 kcal Electronic energy + Delta-G solvation = -30824.050470 eV Core-core repulsion = 26859.419778 eV Total energy + Delta-G solvation = -3964.630692 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.39406 -40.38408 -38.96138 -36.82419 -36.05221 -33.86459 -33.44018 -32.26202 -31.96139 -31.58890 -29.11321 -28.74812 -25.95223 -25.16303 -24.42123 -23.93041 -22.87891 -22.18252 -21.23565 -20.90147 -20.10002 -18.76523 -17.98496 -17.06689 -16.98756 -16.86188 -16.74257 -16.22973 -15.87639 -15.66323 -15.50098 -15.30282 -15.05907 -14.91523 -14.76107 -14.68677 -14.37811 -14.00129 -13.79746 -13.35604 -13.23961 -13.18440 -13.01806 -12.88720 -12.73540 -12.63490 -12.57770 -12.50350 -12.38536 -12.21034 -12.19752 -11.96670 -11.79920 -11.75088 -11.59265 -11.30901 -11.29460 -11.16738 -11.10913 -10.53723 -10.47295 -10.30404 -9.86668 -8.67020 -7.87265 -5.32062 1.44355 1.46791 1.54702 1.83891 2.39630 2.50548 2.98815 3.27371 3.64957 3.71647 3.77304 3.80258 3.90330 4.03283 4.09390 4.10284 4.15475 4.19629 4.26321 4.33466 4.49385 4.51638 4.52392 4.65420 4.69357 4.72213 4.73520 4.76530 4.78700 4.84248 4.87588 4.88650 4.94767 4.97500 5.04021 5.05633 5.10600 5.14897 5.16573 5.20898 5.23790 5.32108 5.35334 5.38748 5.47089 5.50712 5.54306 5.63263 5.71165 5.82878 6.28197 6.38232 6.78288 7.14429 7.47134 7.87260 8.38293 9.18241 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013193 B = 0.002458 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.800681 B =11387.365541 C =12744.065443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.186 3.814 3 N -0.710 5.710 4 C 0.507 3.493 5 O -0.577 6.577 6 C -0.135 4.135 7 C -0.096 4.096 8 C -0.105 4.105 9 C -0.088 4.088 10 C -0.154 4.154 11 C 0.058 3.942 12 O -0.408 6.408 13 C 0.053 3.947 14 C -0.146 4.146 15 C -0.124 4.124 16 C 0.140 3.860 17 N -0.608 5.608 18 C -0.259 4.259 19 H 0.069 0.931 20 C -0.054 4.054 21 N -0.934 5.934 22 Si 0.964 3.036 23 H -0.290 1.290 24 H -0.297 1.297 25 H -0.265 1.265 26 C 0.195 3.805 27 C -0.139 4.139 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.407 0.593 32 H 0.120 0.880 33 H 0.094 0.906 34 H 0.046 0.954 35 H 0.061 0.939 36 H 0.082 0.918 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.061 0.939 40 H 0.069 0.931 41 H 0.057 0.943 42 H 0.095 0.905 43 H 0.057 0.943 44 H 0.104 0.896 45 H 0.091 0.909 46 H 0.065 0.935 47 H 0.096 0.904 48 H 0.069 0.931 49 H 0.025 0.975 50 H 0.058 0.942 51 H 0.247 0.753 52 H 0.038 0.962 53 H -0.006 1.006 54 H 0.050 0.950 55 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.256 18.528 2.985 22.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.100 3.900 3 N -0.362 5.362 4 C 0.295 3.705 5 O -0.458 6.458 6 C -0.175 4.175 7 C -0.135 4.135 8 C -0.142 4.142 9 C -0.106 4.106 10 C -0.192 4.192 11 C -0.018 4.018 12 O -0.327 6.327 13 C -0.023 4.023 14 C -0.184 4.184 15 C -0.163 4.163 16 C 0.015 3.985 17 N -0.332 5.332 18 C -0.389 4.389 19 H 0.087 0.913 20 C -0.249 4.249 21 N -0.580 5.580 22 Si 0.792 3.208 23 H -0.217 1.217 24 H -0.223 1.223 25 H -0.189 1.189 26 C 0.069 3.931 27 C -0.179 4.179 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.243 0.757 32 H 0.138 0.862 33 H 0.112 0.888 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.101 0.899 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.075 0.925 42 H 0.113 0.887 43 H 0.075 0.925 44 H 0.122 0.878 45 H 0.110 0.890 46 H 0.083 0.917 47 H 0.115 0.885 48 H 0.088 0.912 49 H 0.042 0.958 50 H 0.077 0.923 51 H 0.056 0.944 52 H 0.057 0.943 53 H 0.012 0.988 54 H 0.068 0.932 55 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.505 18.326 2.130 22.288 hybrid contribution 1.034 -1.205 -0.258 1.608 sum -11.471 17.121 1.873 20.694 Atomic orbital electron populations 1.22094 0.93764 1.02334 1.02520 1.20132 0.93721 0.81009 0.95115 1.46104 1.53163 1.11443 1.25455 1.21239 0.79427 0.88863 0.80990 1.90598 1.40060 1.78242 1.36865 1.21721 1.02795 0.90840 1.02122 1.21273 1.00714 0.95255 0.96212 1.21576 1.00754 0.93920 0.97987 1.21193 1.00257 0.94834 0.94351 1.22284 1.01186 1.00022 0.95677 1.22647 0.99628 0.81356 0.98177 1.87895 1.72070 1.24375 1.48361 1.22767 0.97575 0.96959 0.84993 1.22224 1.02170 0.95147 0.98856 1.22203 0.96764 1.00838 0.96506 1.21083 0.92723 0.96407 0.88288 1.44292 1.48153 1.39666 1.01046 1.19533 1.09570 1.03736 1.06090 0.91289 1.25787 0.98705 1.00265 1.00145 1.70201 1.38675 1.30788 1.18368 0.85316 0.77175 0.80139 0.78146 1.21710 1.22330 1.18933 1.20295 0.89498 0.94495 0.88819 1.22375 0.97801 0.99088 0.98645 0.91093 0.92638 0.91727 0.75732 0.86173 0.88788 0.93507 0.92018 0.89919 0.92037 0.90818 0.92046 0.91201 0.92493 0.88725 0.92479 0.87766 0.89031 0.91671 0.88538 0.91186 0.95760 0.92299 0.94411 0.94306 0.98766 0.93163 0.92517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.20 8.40 71.98 0.60 -3.59 16 2 C 0.19 5.98 0.66 3.63 0.00 5.98 16 3 N -0.71 -20.57 4.10 -422.80 -1.73 -22.31 16 4 C 0.51 15.29 7.25 87.66 0.64 15.93 16 5 O -0.58 -21.58 12.20 -3.04 -0.04 -21.61 16 6 C -0.14 -2.90 5.70 29.85 0.17 -2.73 16 7 C -0.10 -2.08 4.27 30.59 0.13 -1.95 16 8 C -0.10 -1.69 4.69 30.59 0.14 -1.55 16 9 C -0.09 -1.41 2.27 -10.68 -0.02 -1.44 16 10 C -0.15 -2.96 5.10 30.69 0.16 -2.80 16 11 C 0.06 1.07 6.84 72.01 0.49 1.56 16 12 O -0.41 -8.38 10.77 -148.98 -1.60 -9.99 16 13 C 0.05 0.77 6.84 72.01 0.49 1.27 16 14 C -0.15 -1.99 5.42 30.68 0.17 -1.82 16 15 C -0.12 -3.70 4.96 30.67 0.15 -3.55 16 16 C 0.14 5.28 6.24 86.36 0.54 5.82 16 17 N -0.61 -29.97 3.00 -699.09 -2.09 -32.07 16 18 C -0.26 -14.17 9.58 84.04 0.81 -13.36 16 19 H 0.07 3.64 7.89 -2.91 -0.02 3.62 16 20 C -0.05 -3.04 4.91 84.86 0.42 -2.62 16 21 N -0.93 -56.38 11.19 21.65 0.24 -56.13 16 22 Si 0.96 45.52 29.59 68.60 2.03 47.55 16 23 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 24 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 25 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 26 C 0.19 9.77 5.05 86.36 0.44 10.20 16 27 C -0.14 -5.79 4.67 30.67 0.14 -5.65 16 28 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.05 1.80 6.17 -2.39 -0.01 1.78 16 30 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.41 10.00 7.27 -92.71 -0.67 9.33 16 32 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.05 1.25 6.62 -2.39 -0.02 1.23 16 35 H 0.06 1.39 8.10 -2.38 -0.02 1.37 16 36 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 38 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 39 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.07 1.47 6.75 -2.39 -0.02 1.45 16 41 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 48 H 0.07 2.18 8.14 -2.39 -0.02 2.17 16 49 H 0.02 0.88 6.94 -2.39 -0.02 0.86 16 50 H 0.06 2.16 7.93 -2.39 -0.02 2.14 16 51 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 52 H 0.04 2.27 6.04 -2.39 -0.01 2.26 16 53 H -0.01 -0.31 7.74 -2.39 -0.02 -0.32 16 54 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 55 H 0.06 2.52 6.20 -2.39 -0.01 2.50 16 Total: -1.00 -70.51 409.38 2.44 -68.07 By element: Atomic # 1 Polarization: 26.60 SS G_CDS: 0.17 Total: 26.78 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: 5.46 Total: -0.29 kcal Atomic # 7 Polarization: -106.92 SS G_CDS: -3.59 Total: -110.51 kcal Atomic # 8 Polarization: -29.96 SS G_CDS: -1.64 Total: -31.60 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -70.51 2.44 -68.07 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270231673.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.920 kcal (2) G-P(sol) polarization free energy of solvation -70.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds