Wall clock time and date at job start Tue Mar 31 2020 22:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 110.78414 * 2 1 4 4 N 1.46503 * 109.46943 * 56.75937 * 3 2 1 5 5 C 1.36932 * 119.99936 * 180.02562 * 4 3 2 6 6 H 1.07998 * 120.00448 * 0.02562 * 5 4 3 7 7 C 1.38821 * 119.99807 * 179.97438 * 5 4 3 8 8 N 1.31612 * 119.99998 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99746 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46870 * 90.00725 * 9 7 5 11 11 H 1.48508 * 109.46872 * 210.00216 * 9 7 5 12 12 H 1.48499 * 109.47637 * 330.00588 * 9 7 5 13 13 C 1.55158 * 110.72025 * 123.24274 * 2 1 3 14 14 C 1.55121 * 101.48608 * 82.69399 * 13 2 1 15 15 N 1.47425 * 104.72487 * 37.29579 * 14 13 2 16 16 C 1.34779 * 125.64921 * 155.81741 * 15 14 13 17 17 O 1.21273 * 120.00093 * 179.69456 * 16 15 14 18 18 C 1.50706 * 119.99767 * 359.68933 * 16 15 14 19 19 C 1.53000 * 109.46735 * 180.02562 * 18 16 15 20 20 C 1.52997 * 109.47060 * 180.02562 * 19 18 16 21 21 C 1.52992 * 109.47482 * 180.02562 * 20 19 18 22 22 C 1.53173 * 109.54644 * 294.55799 * 21 20 19 23 23 C 1.53096 * 109.16941 * 183.14872 * 22 21 20 24 24 O 1.42906 * 109.41026 * 57.60797 * 23 22 21 25 25 C 1.42903 * 114.09950 * 298.84353 * 24 23 22 26 26 C 1.53091 * 109.41691 * 61.15838 * 25 24 23 27 27 C 1.47021 * 108.70112 * 335.55220 * 15 14 13 28 28 H 1.08998 * 109.47358 * 183.23317 * 1 2 3 29 29 H 1.09003 * 109.46900 * 303.24154 * 1 2 3 30 30 H 1.09003 * 109.46940 * 63.23864 * 1 2 3 31 31 H 1.08992 * 109.47585 * 176.75947 * 3 2 1 32 32 H 1.09002 * 109.47482 * 296.76507 * 3 2 1 33 33 H 0.97000 * 120.00146 * 0.02562 * 4 3 2 34 34 H 0.97003 * 120.00491 * 179.97438 * 8 7 5 35 35 H 1.08994 * 111.00290 * 200.93747 * 13 2 1 36 36 H 1.09001 * 111.00200 * 324.74710 * 13 2 1 37 37 H 1.09002 * 110.50170 * 278.45407 * 14 13 2 38 38 H 1.09007 * 110.34557 * 156.06203 * 14 13 2 39 39 H 1.09001 * 109.46797 * 60.00350 * 18 16 15 40 40 H 1.08992 * 109.47518 * 300.00347 * 18 16 15 41 41 H 1.09002 * 109.47398 * 300.00410 * 19 18 16 42 42 H 1.09001 * 109.47194 * 60.00591 * 19 18 16 43 43 H 1.09002 * 109.47153 * 300.00319 * 20 19 18 44 44 H 1.08998 * 109.47533 * 59.99948 * 20 19 18 45 45 H 1.09006 * 109.54463 * 54.82085 * 21 20 19 46 46 H 1.09000 * 109.52383 * 303.05585 * 22 21 20 47 47 H 1.09006 * 109.52314 * 63.24091 * 22 21 20 48 48 H 1.09000 * 109.47984 * 297.62802 * 23 22 21 49 49 H 1.08993 * 109.47981 * 177.59013 * 23 22 21 50 50 H 1.09007 * 109.48074 * 301.17772 * 25 24 23 51 51 H 1.09002 * 109.48402 * 181.14441 * 25 24 23 52 52 H 1.08997 * 109.52703 * 182.48758 * 26 25 24 53 53 H 1.09006 * 109.52001 * 62.29786 * 26 25 24 54 54 H 1.09007 * 109.87956 * 120.70273 * 27 15 14 55 55 H 1.08994 * 109.88358 * 241.86449 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0729 1.4304 0.0000 4 7 1.5383 2.1556 1.1553 5 6 1.8874 3.4631 1.3643 6 1 2.5564 3.9599 0.6773 7 6 1.3804 4.1504 2.4587 8 7 0.5646 3.5452 3.2956 9 14 1.8571 5.9338 2.7442 10 1 0.8889 6.8219 2.0519 11 1 1.8407 6.2235 4.2006 12 1 3.2206 6.1739 2.2070 13 6 2.0790 -0.7955 1.2137 14 6 2.0074 -2.2525 0.6860 15 7 2.3715 -2.1531 -0.7391 16 6 2.8849 -3.1478 -1.4899 17 8 3.1429 -2.9539 -2.6589 18 6 3.1382 -4.5009 -0.8767 19 6 3.7189 -5.4401 -1.9357 20 6 3.9756 -6.8140 -1.3134 21 6 4.5569 -7.7530 -2.3722 22 6 3.5124 -8.0032 -3.4642 23 6 4.0739 -9.0046 -4.4770 24 8 4.4298 -10.2132 -3.8026 25 6 5.4373 -10.0485 -2.8027 26 6 4.9306 -9.0890 -1.7227 27 6 2.0760 -0.7912 -1.2073 28 1 -0.3634 -1.0260 0.0580 29 1 -0.3633 0.5634 0.8595 30 1 -0.3633 0.4627 -0.9176 31 1 3.1610 1.4061 0.0581 32 1 1.7692 1.9344 -0.9176 33 1 0.9371 1.7096 1.7721 34 1 0.2106 4.0253 4.0605 35 1 3.1060 -0.5074 1.4374 36 1 1.4399 -0.6658 2.0872 37 1 0.9973 -2.6480 0.7928 38 1 2.7207 -2.8832 1.2167 39 1 2.2006 -4.9111 -0.5016 40 1 3.8457 -4.4002 -0.0537 41 1 3.0118 -5.5409 -2.7591 42 1 4.6567 -5.0297 -2.3104 43 1 4.6826 -6.7135 -0.4899 44 1 3.0378 -7.2242 -0.9390 45 1 5.4454 -7.3005 -2.8126 46 1 2.6058 -8.4089 -3.0151 47 1 3.2814 -7.0652 -3.9692 48 1 4.9574 -8.5814 -4.9551 49 1 3.3188 -9.2190 -5.2331 50 1 6.3387 -9.6390 -3.2589 51 1 5.6644 -11.0150 -2.3528 52 1 5.7139 -8.9276 -0.9822 53 1 4.0527 -9.5167 -1.2384 54 1 2.9869 -0.3206 -1.5776 55 1 1.3263 -0.8254 -1.9978 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270737435.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:37 Heat of formation + Delta-G solvation = -120.114468 kcal Electronic energy + Delta-G solvation = -29430.438700 eV Core-core repulsion = 25465.412461 eV Total energy + Delta-G solvation = -3965.026240 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.34373 -40.38350 -39.35801 -36.81522 -36.46944 -34.39697 -33.55955 -32.11044 -31.96523 -30.51869 -29.28045 -27.85255 -27.08017 -25.17863 -24.48674 -24.05800 -23.83711 -22.03616 -20.93147 -20.33254 -19.87662 -19.17069 -17.88760 -17.42907 -17.07996 -16.95406 -16.71595 -16.43961 -16.03376 -15.69563 -15.57704 -15.48574 -15.27623 -14.97961 -14.76864 -14.66202 -14.18191 -14.04613 -13.83497 -13.60954 -13.32310 -13.25289 -13.00954 -12.94205 -12.85495 -12.74575 -12.68654 -12.62096 -12.41914 -12.20225 -12.14595 -12.09390 -11.83637 -11.61805 -11.59152 -11.51048 -11.42834 -11.16033 -11.14331 -10.92866 -10.86376 -10.39320 -9.66783 -8.97239 -7.94338 -5.21548 1.48278 1.48991 1.57364 1.63954 1.99142 2.56610 2.99292 3.32895 3.39803 3.60195 3.65923 3.77003 3.81414 3.82480 3.94295 4.10840 4.16017 4.21049 4.22231 4.27443 4.31225 4.33338 4.40533 4.50192 4.52435 4.60476 4.66852 4.69237 4.71668 4.75742 4.79356 4.81373 4.85296 4.88055 4.94693 4.98452 5.01910 5.04325 5.09822 5.11773 5.15731 5.20889 5.21251 5.27540 5.31743 5.34089 5.46180 5.48076 5.50967 5.54650 6.28351 6.28565 6.55508 7.15394 7.36234 8.10677 8.37266 9.28769 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.036575 B = 0.001563 C = 0.001549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.357243 B =17913.150176 C =18069.790352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.070 4.070 3 C 0.168 3.832 4 N -0.734 5.734 5 C -0.247 4.247 6 H 0.070 0.930 7 C -0.069 4.069 8 N -0.964 5.964 9 Si 0.969 3.031 10 H -0.289 1.289 11 H -0.294 1.294 12 H -0.273 1.273 13 C -0.116 4.116 14 C 0.105 3.895 15 N -0.617 5.617 16 C 0.518 3.482 17 O -0.592 6.592 18 C -0.127 4.127 19 C -0.100 4.100 20 C -0.104 4.104 21 C -0.091 4.091 22 C -0.151 4.151 23 C 0.056 3.944 24 O -0.407 6.407 25 C 0.053 3.947 26 C -0.147 4.147 27 C 0.124 3.876 28 H 0.073 0.927 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.016 0.984 32 H 0.015 0.985 33 H 0.379 0.621 34 H 0.252 0.748 35 H 0.066 0.934 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.105 0.895 39 H 0.116 0.884 40 H 0.114 0.886 41 H 0.057 0.943 42 H 0.052 0.948 43 H 0.077 0.923 44 H 0.072 0.928 45 H 0.067 0.933 46 H 0.069 0.931 47 H 0.073 0.927 48 H 0.052 0.948 49 H 0.098 0.902 50 H 0.053 0.947 51 H 0.103 0.897 52 H 0.087 0.913 53 H 0.070 0.930 54 H 0.054 0.946 55 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.640 -28.745 -8.273 30.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.071 4.071 3 C 0.041 3.959 4 N -0.378 5.378 5 C -0.379 4.379 6 H 0.088 0.912 7 C -0.261 4.261 8 N -0.615 5.615 9 Si 0.798 3.202 10 H -0.216 1.216 11 H -0.220 1.220 12 H -0.198 1.198 13 C -0.154 4.154 14 C -0.016 4.016 15 N -0.350 5.350 16 C 0.309 3.691 17 O -0.473 6.473 18 C -0.166 4.166 19 C -0.138 4.138 20 C -0.142 4.142 21 C -0.109 4.109 22 C -0.188 4.188 23 C -0.021 4.021 24 O -0.327 6.327 25 C -0.023 4.023 26 C -0.184 4.184 27 C 0.000 4.000 28 H 0.092 0.908 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.034 0.966 32 H 0.033 0.967 33 H 0.213 0.787 34 H 0.060 0.940 35 H 0.085 0.915 36 H 0.103 0.897 37 H 0.108 0.892 38 H 0.123 0.877 39 H 0.134 0.866 40 H 0.132 0.868 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.095 0.905 44 H 0.091 0.909 45 H 0.085 0.915 46 H 0.087 0.913 47 H 0.092 0.908 48 H 0.070 0.930 49 H 0.116 0.884 50 H 0.071 0.929 51 H 0.121 0.879 52 H 0.105 0.895 53 H 0.088 0.912 54 H 0.072 0.928 55 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.822 -28.735 -9.009 30.877 hybrid contribution 0.011 1.804 0.318 1.832 sum 6.833 -26.931 -8.691 29.112 Atomic orbital electron populations 1.21675 0.92799 1.01928 1.01780 1.21624 0.96658 0.93869 0.94988 1.20678 0.95248 0.90250 0.89765 1.42437 1.56727 1.10153 1.28468 1.19594 1.22225 0.89343 1.06770 0.91207 1.25451 1.00625 1.02120 0.97951 1.69780 1.37544 1.37586 1.16554 0.85209 0.77922 0.80527 0.76494 1.21590 1.22009 1.19838 1.22808 1.01688 0.93745 0.97161 1.22597 1.02414 0.97318 0.79297 1.48679 1.62612 1.11015 1.12681 1.21239 0.75557 0.86730 0.85567 1.90672 1.54139 1.83828 1.18657 1.21728 1.04934 0.89593 1.00384 1.21328 1.00765 0.94422 0.97329 1.21565 1.01847 0.93010 0.97736 1.21207 0.98227 0.95533 0.95950 1.22270 0.99255 0.99731 0.97590 1.22683 0.99835 0.85146 0.94422 1.87897 1.59082 1.32505 1.53192 1.22749 0.89966 1.00892 0.88738 1.22220 1.02523 0.95104 0.98564 1.21798 0.99604 0.82378 0.96193 0.90816 0.93269 0.93023 0.96600 0.96735 0.78673 0.93964 0.91537 0.89718 0.89154 0.87677 0.86618 0.86805 0.92436 0.92959 0.90485 0.90896 0.91460 0.91263 0.90819 0.92992 0.88415 0.92897 0.87917 0.89474 0.91174 0.92803 0.91741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.65 8.28 71.98 0.60 -3.05 16 2 C -0.07 -2.13 0.61 -50.99 -0.03 -2.16 16 3 C 0.17 6.63 5.08 86.38 0.44 7.07 16 4 N -0.73 -35.92 5.16 -343.45 -1.77 -37.69 16 5 C -0.25 -13.66 9.99 84.04 0.84 -12.82 16 6 H 0.07 3.77 7.83 -2.91 -0.02 3.74 16 7 C -0.07 -3.88 5.50 84.87 0.47 -3.41 16 8 N -0.96 -57.22 13.06 21.65 0.28 -56.94 16 9 Si 0.97 45.65 29.55 68.60 2.03 47.68 16 10 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 11 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 12 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 13 C -0.12 -3.04 5.73 32.06 0.18 -2.85 16 14 C 0.11 1.94 6.38 86.93 0.55 2.50 16 15 N -0.62 -14.78 3.32 -811.35 -2.70 -17.48 16 16 C 0.52 12.74 7.85 87.66 0.69 13.43 16 17 O -0.59 -19.79 16.31 -3.01 -0.05 -19.84 16 18 C -0.13 -1.84 4.70 29.85 0.14 -1.70 16 19 C -0.10 -1.53 4.27 30.59 0.13 -1.40 16 20 C -0.10 -1.06 4.69 30.59 0.14 -0.92 16 21 C -0.09 -1.03 2.27 -10.68 -0.02 -1.05 16 22 C -0.15 -1.93 5.10 30.68 0.16 -1.77 16 23 C 0.06 0.75 6.84 72.01 0.49 1.24 16 24 O -0.41 -6.74 10.77 -148.98 -1.60 -8.34 16 25 C 0.05 0.60 6.84 72.01 0.49 1.09 16 26 C -0.15 -1.42 5.42 30.69 0.17 -1.26 16 27 C 0.12 3.54 6.04 86.73 0.52 4.06 16 28 H 0.07 1.74 7.39 -2.39 -0.02 1.72 16 29 H 0.05 1.70 6.69 -2.39 -0.02 1.68 16 30 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.02 0.65 8.10 -2.39 -0.02 0.63 16 32 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.38 19.23 6.21 -92.71 -0.58 18.65 16 34 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 35 H 0.07 1.91 8.02 -2.39 -0.02 1.89 16 36 H 0.08 2.32 8.04 -2.39 -0.02 2.30 16 37 H 0.09 1.37 7.67 -2.39 -0.02 1.35 16 38 H 0.11 1.35 7.48 -2.38 -0.02 1.33 16 39 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.11 1.20 7.85 -2.39 -0.02 1.18 16 41 H 0.06 1.04 6.62 -2.39 -0.02 1.02 16 42 H 0.05 0.97 8.10 -2.39 -0.02 0.95 16 43 H 0.08 0.63 8.14 -2.39 -0.02 0.62 16 44 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 46 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.07 1.01 6.75 -2.38 -0.02 0.99 16 48 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 49 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 50 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 51 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 52 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 53 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 54 H 0.05 1.69 7.82 -2.38 -0.02 1.67 16 55 H 0.06 1.87 7.84 -2.39 -0.02 1.85 16 Total: -1.00 -70.12 421.67 2.41 -67.71 By element: Atomic # 1 Polarization: 27.64 SS G_CDS: 0.26 Total: 27.90 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: 5.96 Total: -3.00 kcal Atomic # 7 Polarization: -107.92 SS G_CDS: -4.19 Total: -112.10 kcal Atomic # 8 Polarization: -26.53 SS G_CDS: -1.65 Total: -28.19 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -70.12 2.41 -67.71 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270737435.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.405 kcal (2) G-P(sol) polarization free energy of solvation -70.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds