Wall clock time and date at job start Tue Mar 31 2020 22:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 110.37566 * 2 1 4 4 N 1.46506 * 109.47200 * 302.19083 * 3 2 1 5 5 C 1.36935 * 119.99928 * 179.97438 * 4 3 2 6 6 H 1.07995 * 120.00279 * 359.97438 * 5 4 3 7 7 C 1.38810 * 119.99787 * 179.97438 * 5 4 3 8 8 N 1.31618 * 120.00253 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99976 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46674 * 60.00197 * 9 7 5 11 11 H 1.48500 * 109.46816 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47317 * 300.00376 * 9 7 5 13 13 C 1.54618 * 110.32604 * 237.81029 * 2 1 3 14 14 C 1.54598 * 102.91155 * 262.80911 * 13 2 1 15 15 N 1.48113 * 103.42522 * 322.86941 * 14 13 2 16 16 C 1.34777 * 127.03730 * 219.29060 * 15 14 13 17 17 O 1.21283 * 120.00463 * 179.68285 * 16 15 14 18 18 C 1.50700 * 119.99675 * 359.40408 * 16 15 14 19 19 C 1.53004 * 109.47208 * 180.27843 * 18 16 15 20 20 C 1.52997 * 109.47000 * 179.97438 * 19 18 16 21 21 C 1.53010 * 109.46712 * 179.97438 * 20 19 18 22 22 C 1.53172 * 109.54630 * 294.82783 * 21 20 19 23 23 C 1.53101 * 109.15469 * 183.24181 * 22 21 20 24 24 O 1.42904 * 109.49094 * 57.47582 * 23 22 21 25 25 C 1.42907 * 114.09355 * 298.88796 * 24 23 22 26 26 C 1.53097 * 109.41715 * 61.15648 * 25 24 23 27 27 C 1.47487 * 105.93196 * 39.02233 * 15 14 13 28 28 H 1.08993 * 109.47045 * 297.81328 * 1 2 3 29 29 H 1.09002 * 109.46742 * 57.81065 * 1 2 3 30 30 H 1.09002 * 109.47612 * 177.80581 * 1 2 3 31 31 H 1.09007 * 109.47150 * 62.18714 * 3 2 1 32 32 H 1.09003 * 109.47515 * 182.19101 * 3 2 1 33 33 H 0.96996 * 119.99807 * 359.97438 * 4 3 2 34 34 H 0.97000 * 120.00519 * 179.97438 * 8 7 5 35 35 H 1.09001 * 110.73956 * 21.29447 * 13 2 1 36 36 H 1.09005 * 110.73947 * 144.44600 * 13 2 1 37 37 H 1.09004 * 110.62019 * 204.35268 * 14 13 2 38 38 H 1.09004 * 110.54960 * 81.34878 * 14 13 2 39 39 H 1.09009 * 109.47352 * 300.27556 * 18 16 15 40 40 H 1.08998 * 109.47585 * 60.27844 * 18 16 15 41 41 H 1.09000 * 109.46887 * 300.00372 * 19 18 16 42 42 H 1.08998 * 109.46846 * 59.99549 * 19 18 16 43 43 H 1.08995 * 109.47672 * 299.99669 * 20 19 18 44 44 H 1.09001 * 109.47109 * 60.00906 * 20 19 18 45 45 H 1.09003 * 109.53844 * 55.00527 * 21 20 19 46 46 H 1.09002 * 109.52064 * 303.05434 * 22 21 20 47 47 H 1.08995 * 109.52377 * 63.24214 * 22 21 20 48 48 H 1.08996 * 109.40968 * 297.48921 * 23 22 21 49 49 H 1.09003 * 109.48304 * 177.49697 * 23 22 21 50 50 H 1.08996 * 109.48088 * 301.17440 * 25 24 23 51 51 H 1.08997 * 109.48211 * 181.14093 * 25 24 23 52 52 H 1.08994 * 109.52391 * 182.48275 * 26 25 24 53 53 H 1.09000 * 109.57014 * 62.32629 * 26 25 24 54 54 H 1.08998 * 109.91504 * 94.14277 * 27 15 14 55 55 H 1.08996 * 109.91172 * 215.42025 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0627 1.4342 0.0000 4 7 1.5429 2.1482 -1.1689 5 6 1.8863 3.4568 -1.3804 6 1 2.5399 3.9627 -0.6853 7 6 1.3942 4.1332 -2.4882 8 7 0.5972 3.5168 -3.3351 9 14 1.8620 5.9186 -2.7763 10 1 3.3366 6.0276 -2.9151 11 1 1.2110 6.4066 -4.0186 12 1 1.4111 6.7405 -1.6247 13 6 2.0671 -0.7724 -1.2270 14 6 2.3640 -2.1753 -0.6493 15 7 2.8803 -1.8858 0.7084 16 6 3.8922 -2.5108 1.3424 17 8 4.2150 -2.1636 2.4588 18 6 4.6185 -3.6452 0.6667 19 6 5.7089 -4.1792 1.5977 20 6 6.4458 -5.3314 0.9118 21 6 7.5367 -5.8649 1.8427 22 6 8.5989 -4.7830 2.0603 23 6 9.7258 -5.3524 2.9263 24 8 10.2742 -6.5108 2.2941 25 6 9.3366 -7.5734 2.1092 26 6 8.1952 -7.0940 1.2086 27 6 2.0649 -0.7694 1.2221 28 1 -0.3633 0.4795 0.9089 29 1 -0.3633 0.5475 -0.8697 30 1 -0.3634 -1.0269 -0.0393 31 1 1.7397 1.9418 0.9090 32 1 3.1519 1.4173 -0.0393 33 1 0.9555 1.6940 -1.7930 34 1 0.2530 3.9895 -4.1091 35 1 1.3105 -0.8277 -2.0098 36 1 2.9789 -0.3101 -1.6053 37 1 3.1194 -2.6848 -1.2475 38 1 1.4507 -2.7679 -0.5952 39 1 3.9126 -4.4439 0.4383 40 1 5.0728 -3.2869 -0.2570 41 1 6.4148 -3.3806 1.8261 42 1 5.2545 -4.5376 2.5214 43 1 5.7398 -6.1298 0.6839 44 1 6.9002 -4.9733 -0.0120 45 1 7.0957 -6.1409 2.8005 46 1 9.0035 -4.4708 1.0975 47 1 8.1490 -3.9266 2.5624 48 1 9.3287 -5.6255 3.9039 49 1 10.5061 -4.6010 3.0477 50 1 8.9343 -7.8755 3.0761 51 1 9.8364 -8.4219 1.6421 52 1 7.4569 -7.8887 1.1022 53 1 8.5903 -6.8302 0.2276 54 1 1.2329 -1.1571 1.8100 55 1 2.6808 -0.1111 1.8348 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270737436.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:42 Heat of formation + Delta-G solvation = -119.133162 kcal Electronic energy + Delta-G solvation = -29581.063672 eV Core-core repulsion = 25616.079985 eV Total energy + Delta-G solvation = -3964.983687 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.30018 -40.38677 -39.36537 -36.81789 -36.46120 -34.41130 -33.56484 -32.12619 -31.97490 -30.54271 -29.29773 -27.72561 -27.08267 -25.16999 -24.51357 -24.06692 -23.90814 -22.05117 -20.93623 -20.31972 -19.86657 -19.16818 -17.92787 -17.32784 -17.12788 -16.94570 -16.64660 -16.41155 -16.20976 -15.78910 -15.61641 -15.33418 -15.08274 -14.96893 -14.91702 -14.66970 -14.18848 -14.00457 -13.89356 -13.57125 -13.30229 -13.22610 -13.04985 -12.89923 -12.80721 -12.76617 -12.67422 -12.58096 -12.41910 -12.20703 -12.20245 -12.09207 -11.83129 -11.63045 -11.60424 -11.49282 -11.39210 -11.16916 -11.14473 -10.94354 -10.86006 -10.39810 -9.71532 -8.99075 -7.95592 -5.23123 1.46528 1.48595 1.54893 1.63714 1.99092 2.55141 2.98956 3.35211 3.38683 3.64621 3.67529 3.76713 3.79749 3.83147 3.93725 4.09929 4.15312 4.21222 4.23859 4.28523 4.32728 4.34476 4.42854 4.50186 4.52112 4.59620 4.67804 4.70699 4.71271 4.76127 4.78492 4.80071 4.85180 4.89225 4.91354 4.96807 5.00710 5.04176 5.09735 5.11021 5.15415 5.20574 5.23105 5.26376 5.30860 5.39486 5.45568 5.48240 5.52964 5.54551 6.26988 6.28304 6.58544 7.15437 7.34680 8.08919 8.36508 9.27104 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.017529 B = 0.001784 C = 0.001701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.976969 B =15692.882470 C =16459.978742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.072 4.072 3 C 0.167 3.833 4 N -0.733 5.733 5 C -0.250 4.250 6 H 0.067 0.933 7 C -0.068 4.068 8 N -0.963 5.963 9 Si 0.970 3.030 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.281 1.281 13 C -0.119 4.119 14 C 0.107 3.893 15 N -0.622 5.622 16 C 0.521 3.479 17 O -0.593 6.593 18 C -0.127 4.127 19 C -0.100 4.100 20 C -0.104 4.104 21 C -0.090 4.090 22 C -0.153 4.153 23 C 0.056 3.944 24 O -0.408 6.408 25 C 0.053 3.947 26 C -0.146 4.146 27 C 0.120 3.880 28 H 0.052 0.948 29 H 0.046 0.954 30 H 0.080 0.920 31 H 0.012 0.988 32 H 0.005 0.995 33 H 0.380 0.620 34 H 0.252 0.748 35 H 0.088 0.912 36 H 0.054 0.946 37 H 0.107 0.893 38 H 0.100 0.900 39 H 0.120 0.880 40 H 0.109 0.891 41 H 0.052 0.948 42 H 0.056 0.944 43 H 0.081 0.919 44 H 0.068 0.932 45 H 0.070 0.930 46 H 0.065 0.935 47 H 0.072 0.928 48 H 0.054 0.946 49 H 0.096 0.904 50 H 0.055 0.945 51 H 0.103 0.897 52 H 0.089 0.911 53 H 0.067 0.933 54 H 0.081 0.919 55 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.468 -26.807 8.101 29.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.073 4.073 3 C 0.040 3.960 4 N -0.377 5.377 5 C -0.382 4.382 6 H 0.085 0.915 7 C -0.261 4.261 8 N -0.613 5.613 9 Si 0.799 3.201 10 H -0.207 1.207 11 H -0.218 1.218 12 H -0.207 1.207 13 C -0.157 4.157 14 C -0.014 4.014 15 N -0.355 5.355 16 C 0.312 3.688 17 O -0.474 6.474 18 C -0.166 4.166 19 C -0.139 4.139 20 C -0.142 4.142 21 C -0.108 4.108 22 C -0.190 4.190 23 C -0.020 4.020 24 O -0.327 6.327 25 C -0.024 4.024 26 C -0.184 4.184 27 C -0.003 4.003 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.099 0.901 31 H 0.030 0.970 32 H 0.023 0.977 33 H 0.214 0.786 34 H 0.061 0.939 35 H 0.106 0.894 36 H 0.073 0.927 37 H 0.125 0.875 38 H 0.118 0.882 39 H 0.139 0.861 40 H 0.127 0.873 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.100 0.900 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.084 0.916 47 H 0.090 0.910 48 H 0.072 0.928 49 H 0.114 0.886 50 H 0.073 0.927 51 H 0.121 0.879 52 H 0.108 0.892 53 H 0.086 0.914 54 H 0.099 0.901 55 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.986 -26.540 8.714 30.016 hybrid contribution -0.333 1.690 -0.236 1.738 sum 10.652 -24.850 8.478 28.335 Atomic orbital electron populations 1.21733 0.92380 1.02324 1.01794 1.21515 0.96955 0.93690 0.95173 1.20772 0.94791 0.90957 0.89447 1.42436 1.58170 1.10060 1.27050 1.19533 1.23268 0.89388 1.06004 0.91523 1.25459 1.00716 1.02183 0.97737 1.69773 1.38406 1.37665 1.15474 0.85278 0.77588 0.80429 0.76837 1.20740 1.21772 1.20703 1.22660 1.01428 0.94950 0.96695 1.22710 1.00994 0.96568 0.81152 1.49009 1.33230 1.34469 1.18767 1.21219 0.78316 0.83881 0.85391 1.90674 1.66974 1.67979 1.21820 1.21722 0.98891 0.95712 1.00314 1.21329 0.96395 0.98121 0.98009 1.21571 0.97016 0.97375 0.98202 1.21203 0.95164 0.94940 0.99503 1.22280 0.96653 0.98990 1.01099 1.22664 0.96818 0.87615 0.94903 1.87900 1.37747 1.25929 1.81133 1.22760 0.90756 0.89649 0.99198 1.22219 0.98342 0.98231 0.99609 1.21972 0.94503 0.88265 0.95601 0.92880 0.93510 0.90088 0.97001 0.97708 0.78600 0.93892 0.89382 0.92688 0.87480 0.88227 0.86148 0.87330 0.92953 0.92493 0.90048 0.91319 0.91156 0.91603 0.90953 0.92795 0.88610 0.92705 0.87892 0.89206 0.91388 0.90085 0.92951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.55 8.05 71.98 0.58 -2.97 16 2 C -0.07 -2.20 0.67 -51.29 -0.03 -2.23 16 3 C 0.17 6.87 4.85 86.38 0.42 7.29 16 4 N -0.73 -36.68 5.12 -343.45 -1.76 -38.44 16 5 C -0.25 -14.08 9.99 84.03 0.84 -13.24 16 6 H 0.07 3.69 7.83 -2.91 -0.02 3.67 16 7 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 8 N -0.96 -57.57 13.06 21.65 0.28 -57.29 16 9 Si 0.97 46.19 29.55 68.60 2.03 48.22 16 10 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 11 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 12 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 13 C -0.12 -3.18 5.72 31.69 0.18 -3.00 16 14 C 0.11 1.96 6.93 86.61 0.60 2.56 16 15 N -0.62 -15.21 3.29 -810.08 -2.67 -17.88 16 16 C 0.52 13.37 7.89 87.66 0.69 14.07 16 17 O -0.59 -20.57 16.32 -3.04 -0.05 -20.62 16 18 C -0.13 -1.97 4.63 29.85 0.14 -1.84 16 19 C -0.10 -1.63 4.26 30.59 0.13 -1.50 16 20 C -0.10 -1.15 4.69 30.60 0.14 -1.01 16 21 C -0.09 -1.08 2.27 -10.67 -0.02 -1.10 16 22 C -0.15 -2.20 5.10 30.69 0.16 -2.05 16 23 C 0.06 0.83 6.84 72.02 0.49 1.32 16 24 O -0.41 -7.14 10.77 -148.98 -1.60 -8.74 16 25 C 0.05 0.62 6.84 72.01 0.49 1.12 16 26 C -0.15 -1.50 5.43 30.69 0.17 -1.33 16 27 C 0.12 3.39 6.29 86.53 0.54 3.93 16 28 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.05 1.59 6.75 -2.39 -0.02 1.58 16 30 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 32 H 0.01 0.22 8.11 -2.39 -0.02 0.20 16 33 H 0.38 19.55 6.18 -92.71 -0.57 18.98 16 34 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 35 H 0.09 2.31 7.85 -2.39 -0.02 2.29 16 36 H 0.05 1.74 7.84 -2.38 -0.02 1.73 16 37 H 0.11 1.39 7.24 -2.38 -0.02 1.37 16 38 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.12 1.21 8.14 -2.38 -0.02 1.19 16 40 H 0.11 1.39 7.90 -2.39 -0.02 1.37 16 41 H 0.05 1.06 6.61 -2.39 -0.02 1.05 16 42 H 0.06 1.06 8.10 -2.39 -0.02 1.04 16 43 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 46 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.07 1.13 6.74 -2.39 -0.02 1.12 16 48 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 49 H 0.10 1.28 8.14 -2.39 -0.02 1.27 16 50 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 51 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 52 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 53 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 54 H 0.08 2.04 7.68 -2.39 -0.02 2.02 16 55 H 0.05 1.73 7.59 -2.39 -0.02 1.71 16 Total: -1.00 -72.13 422.25 2.48 -69.65 By element: Atomic # 1 Polarization: 28.24 SS G_CDS: 0.27 Total: 28.51 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: 5.98 Total: -3.41 kcal Atomic # 7 Polarization: -109.46 SS G_CDS: -4.14 Total: -113.61 kcal Atomic # 8 Polarization: -27.71 SS G_CDS: -1.65 Total: -29.36 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -72.13 2.48 -69.65 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270737436.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.485 kcal (2) G-P(sol) polarization free energy of solvation -72.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds