Wall clock time and date at job start Tue Mar 31 2020 22:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 113.99961 * 2 1 4 4 C 1.53001 * 109.47214 * 150.00598 * 3 2 1 5 5 C 1.53000 * 109.47283 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.47094 * 299.99806 * 5 4 3 7 7 C 1.52998 * 109.46734 * 179.97438 * 6 5 4 8 8 C 1.50706 * 109.47052 * 174.99860 * 7 6 5 9 9 O 1.21284 * 119.99508 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00297 * 179.97438 * 8 7 6 11 11 C 1.48118 * 127.03156 * 359.95106 * 10 8 7 12 12 C 1.54945 * 103.25072 * 219.33154 * 11 10 8 13 13 C 1.54611 * 102.84288 * 322.62429 * 12 11 10 14 14 C 1.53003 * 110.32650 * 262.95888 * 13 12 11 15 15 C 1.52996 * 110.33185 * 140.74116 * 13 12 11 16 16 N 1.46505 * 109.47099 * 64.37717 * 15 13 12 17 17 C 1.36937 * 119.99824 * 180.02562 * 16 15 13 18 18 H 1.07995 * 120.00469 * 359.97438 * 17 16 15 19 19 C 1.38814 * 119.99532 * 180.02562 * 17 16 15 20 20 N 1.31619 * 120.00423 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99643 * 179.97438 * 19 17 16 22 22 H 1.48492 * 109.47369 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.46830 * 120.00071 * 21 19 17 24 24 H 1.48502 * 109.46717 * 239.99663 * 21 19 17 25 25 C 1.47484 * 127.03387 * 179.97438 * 10 8 7 26 26 C 1.53001 * 109.46989 * 60.00343 * 6 5 4 27 27 C 1.52999 * 109.47314 * 270.00042 * 3 2 1 28 28 H 1.09005 * 109.46842 * 299.99384 * 1 2 3 29 29 H 1.08993 * 109.47114 * 59.99714 * 1 2 3 30 30 H 1.08998 * 109.47142 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47489 * 30.00476 * 3 2 1 32 32 H 1.08995 * 109.47573 * 60.00053 * 4 3 2 33 33 H 1.09005 * 109.47010 * 299.99610 * 4 3 2 34 34 H 1.09004 * 109.47336 * 179.97438 * 5 4 3 35 35 H 1.09007 * 109.46970 * 59.99879 * 5 4 3 36 36 H 1.08995 * 109.47094 * 299.99561 * 6 5 4 37 37 H 1.09003 * 109.47657 * 55.00517 * 7 6 5 38 38 H 1.09004 * 109.47420 * 294.99814 * 7 6 5 39 39 H 1.08996 * 110.66106 * 100.89622 * 11 10 8 40 40 H 1.08999 * 110.80476 * 337.84373 * 11 10 8 41 41 H 1.09003 * 110.73641 * 204.28448 * 12 11 10 42 42 H 1.09003 * 110.89592 * 81.03689 * 12 11 10 43 43 H 1.09009 * 109.46987 * 175.61826 * 14 13 12 44 44 H 1.09003 * 109.46847 * 295.61527 * 14 13 12 45 45 H 1.09001 * 109.47321 * 55.62010 * 14 13 12 46 46 H 1.08992 * 109.47803 * 184.38183 * 15 13 12 47 47 H 1.09002 * 109.46805 * 304.38390 * 15 13 12 48 48 H 0.96999 * 119.99665 * 0.02562 * 16 15 13 49 49 H 0.96993 * 120.00591 * 180.02562 * 20 19 17 50 50 H 1.09000 * 109.91322 * 35.14794 * 25 10 8 51 51 H 1.08997 * 109.91328 * 273.87427 * 25 10 8 52 52 H 1.08990 * 109.47386 * 59.99765 * 26 6 5 53 53 H 1.09004 * 109.46581 * 180.02562 * 26 6 5 54 54 H 1.08996 * 109.47885 * 300.00321 * 27 3 2 55 55 H 1.09004 * 109.46972 * 60.00416 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.3590 1.2632 0.7211 5 6 3.9810 2.6611 0.7217 6 6 4.1882 3.1277 -0.7206 7 6 4.8097 4.5258 -0.7200 8 6 5.1270 4.9351 -2.1352 9 8 4.8800 4.1827 -3.0539 10 7 5.6844 6.1375 -2.3801 11 6 6.0472 7.1720 -1.3841 12 6 5.6526 8.4954 -2.0868 13 6 6.0295 8.2268 -3.5621 14 6 7.4086 8.8118 -3.8732 15 6 4.9751 8.8223 -4.4970 16 7 4.9650 10.2806 -4.3559 17 6 4.0958 11.0343 -5.0987 18 1 3.4181 10.5539 -5.7888 19 6 4.0867 12.4159 -4.9653 20 7 4.9129 13.0015 -4.1247 21 14 2.9015 13.4442 -5.9791 22 1 2.0859 12.5526 -6.8421 23 1 2.0083 14.2084 -5.0717 24 1 3.6689 14.3892 -6.8297 25 6 6.0574 6.6925 -3.6946 26 6 2.8395 3.1700 -1.4417 27 6 2.2176 1.7714 -1.4425 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.3450 1.9994 0.5139 32 1 4.0242 0.5694 0.2073 33 1 3.2113 0.9313 1.7489 34 1 4.9417 2.6311 1.2358 35 1 3.3155 3.3547 1.2359 36 1 4.8537 2.4342 -1.2347 37 1 5.7265 4.5157 -0.1305 38 1 4.1061 5.2359 -0.2855 39 1 7.1174 7.1498 -1.1790 40 1 5.4777 7.0403 -0.4641 41 1 6.2277 9.3308 -1.6874 42 1 4.5833 8.6834 -1.9897 43 1 7.6939 8.5479 -4.8917 44 1 7.3735 9.8969 -3.7754 45 1 8.1410 8.4075 -3.1745 46 1 5.2126 8.5587 -5.5276 47 1 3.9936 8.4254 -4.2375 48 1 5.5739 10.7120 -3.7364 49 1 4.9063 13.9669 -4.0312 50 1 5.3399 6.3721 -4.4500 51 1 7.0595 6.3612 -3.9667 52 1 2.1742 3.8634 -0.9276 53 1 2.9873 3.5019 -2.4694 54 1 2.8828 1.0776 -1.9564 55 1 1.2568 1.8015 -1.9563 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270855178.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:32 Heat of formation + Delta-G solvation = -113.618034 kcal Electronic energy + Delta-G solvation = -30281.015490 eV Core-core repulsion = 26316.270956 eV Total energy + Delta-G solvation = -3964.744533 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.41017 -40.28979 -39.23633 -37.46056 -36.45070 -34.38413 -32.94144 -32.05116 -31.71415 -30.49080 -28.83408 -27.71140 -27.31911 -26.20356 -24.50577 -23.92326 -23.65331 -22.38961 -20.82479 -20.28807 -19.82913 -19.16446 -17.93502 -17.57599 -17.14939 -16.80703 -16.51733 -16.38544 -16.06533 -15.77786 -15.53688 -15.11695 -15.00657 -14.94447 -14.82463 -14.53819 -14.15911 -14.11388 -13.75341 -13.55572 -13.33468 -13.16904 -13.04137 -13.02077 -12.87780 -12.79749 -12.75015 -12.58173 -12.44568 -12.14019 -12.07937 -12.04652 -11.78479 -11.66259 -11.55412 -11.49777 -11.45806 -11.37116 -11.18623 -10.95696 -10.73616 -10.31750 -9.66233 -8.98994 -7.96074 -5.23401 1.46166 1.46652 1.56526 1.68604 2.02039 2.54728 2.81964 3.36166 3.40319 3.68244 3.70792 3.73574 3.81716 3.82872 3.92475 4.13595 4.23934 4.28388 4.28719 4.34984 4.36960 4.44877 4.45775 4.48948 4.53074 4.55049 4.59092 4.63871 4.68936 4.74305 4.78479 4.82566 4.84595 4.89783 4.91563 4.97473 5.02057 5.05220 5.12536 5.14901 5.15515 5.23449 5.25558 5.27745 5.29850 5.40760 5.48729 5.49194 5.54642 5.55901 6.27007 6.29534 6.63100 7.21613 7.34533 8.08845 8.36292 9.27119 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015856 B = 0.002094 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.499267 B =13370.937230 C =14392.058014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.410 6.410 3 C 0.088 3.912 4 C -0.113 4.113 5 C -0.103 4.103 6 C -0.069 4.069 7 C -0.124 4.124 8 C 0.521 3.479 9 O -0.584 6.584 10 N -0.622 5.622 11 C 0.107 3.893 12 C -0.118 4.118 13 C -0.072 4.072 14 C -0.125 4.125 15 C 0.168 3.832 16 N -0.734 5.734 17 C -0.246 4.246 18 H 0.067 0.933 19 C -0.070 4.070 20 N -0.963 5.963 21 Si 0.969 3.031 22 H -0.272 1.272 23 H -0.291 1.291 24 H -0.292 1.292 25 C 0.122 3.878 26 C -0.116 4.116 27 C -0.134 4.134 28 H 0.052 0.948 29 H 0.040 0.960 30 H 0.095 0.905 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.060 0.940 37 H 0.123 0.877 38 H 0.111 0.889 39 H 0.098 0.902 40 H 0.108 0.892 41 H 0.086 0.914 42 H 0.055 0.945 43 H 0.051 0.949 44 H 0.045 0.955 45 H 0.080 0.920 46 H 0.011 0.989 47 H 0.006 0.994 48 H 0.380 0.620 49 H 0.252 0.748 50 H 0.052 0.948 51 H 0.079 0.921 52 H 0.066 0.934 53 H 0.054 0.946 54 H 0.053 0.947 55 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.024 -22.823 15.606 27.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.330 6.330 3 C 0.031 3.969 4 C -0.151 4.151 5 C -0.140 4.140 6 C -0.088 4.088 7 C -0.164 4.164 8 C 0.313 3.687 9 O -0.465 6.465 10 N -0.355 5.355 11 C -0.015 4.015 12 C -0.157 4.157 13 C -0.073 4.073 14 C -0.183 4.183 15 C 0.041 3.959 16 N -0.378 5.378 17 C -0.378 4.378 18 H 0.085 0.915 19 C -0.262 4.262 20 N -0.614 5.614 21 Si 0.799 3.201 22 H -0.197 1.197 23 H -0.218 1.218 24 H -0.219 1.219 25 C -0.002 4.002 26 C -0.153 4.153 27 C -0.172 4.172 28 H 0.071 0.929 29 H 0.059 0.941 30 H 0.114 0.886 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.098 0.902 34 H 0.108 0.892 35 H 0.098 0.902 36 H 0.079 0.921 37 H 0.141 0.859 38 H 0.130 0.870 39 H 0.116 0.884 40 H 0.126 0.874 41 H 0.105 0.895 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.065 0.935 45 H 0.099 0.901 46 H 0.029 0.971 47 H 0.024 0.976 48 H 0.214 0.786 49 H 0.061 0.939 50 H 0.070 0.930 51 H 0.098 0.902 52 H 0.085 0.915 53 H 0.073 0.927 54 H 0.072 0.928 55 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.176 -23.470 15.018 27.864 hybrid contribution -0.840 1.308 -1.194 1.960 sum -1.017 -22.162 13.824 26.140 Atomic orbital electron populations 1.22933 0.80074 1.03606 1.00525 1.87868 1.20984 1.28935 1.95173 1.22270 0.95671 0.83964 0.95019 1.21568 0.94566 0.98128 1.00802 1.21536 1.02320 0.95401 0.94766 1.20907 0.96117 0.94929 0.96854 1.21784 1.04508 0.98601 0.91466 1.21141 0.75515 0.79172 0.92907 1.90662 1.54741 1.52619 1.48450 1.49001 1.60974 1.16462 1.09081 1.22763 1.02188 0.84427 0.92076 1.22711 1.01477 0.98140 0.93350 1.21512 0.96280 0.93333 0.96185 1.21738 0.94316 1.00520 1.01689 1.20769 0.95214 0.84020 0.95941 1.42461 1.44585 1.01136 1.49569 1.19594 1.12548 0.89443 1.16213 0.91522 1.25462 1.01702 0.97642 1.01440 1.69784 1.41567 1.09084 1.40949 0.85139 0.78360 0.78671 0.77973 1.19696 1.21809 1.21911 1.21949 1.00423 0.91733 0.86114 1.21621 0.96414 0.96093 1.01186 1.21949 1.00555 0.97141 0.97510 0.92905 0.94095 0.88649 0.91185 0.92168 0.90240 0.89244 0.90200 0.92134 0.85909 0.87049 0.88355 0.87376 0.89521 0.92622 0.92945 0.93548 0.90110 0.97076 0.97642 0.78597 0.93903 0.92972 0.90249 0.91548 0.92748 0.92849 0.92566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 10.82 113.37 1.23 1.56 16 2 O -0.41 -7.88 10.35 -148.98 -1.54 -9.43 16 3 C 0.09 1.47 2.61 30.59 0.08 1.55 16 4 C -0.11 -1.57 5.57 30.59 0.17 -1.40 16 5 C -0.10 -1.13 5.20 30.59 0.16 -0.97 16 6 C -0.07 -1.15 1.84 -10.79 -0.02 -1.17 16 7 C -0.12 -1.88 4.11 29.85 0.12 -1.75 16 8 C 0.52 12.99 7.61 87.66 0.67 13.66 16 9 O -0.58 -19.56 14.30 -3.04 -0.04 -19.60 16 10 N -0.62 -14.88 3.29 -809.35 -2.66 -17.55 16 11 C 0.11 1.91 6.95 86.73 0.60 2.52 16 12 C -0.12 -3.13 5.73 31.81 0.18 -2.95 16 13 C -0.07 -2.18 0.67 -51.29 -0.03 -2.21 16 14 C -0.13 -3.56 8.05 71.98 0.58 -2.98 16 15 C 0.17 6.85 4.85 86.38 0.42 7.27 16 16 N -0.73 -36.59 5.12 -343.46 -1.76 -38.35 16 17 C -0.25 -13.82 9.99 84.03 0.84 -12.98 16 18 H 0.07 3.70 7.83 -2.91 -0.02 3.68 16 19 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 20 N -0.96 -57.57 13.06 21.65 0.28 -57.29 16 21 Si 0.97 46.19 29.55 68.60 2.03 48.22 16 22 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 23 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 24 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 25 C 0.12 3.39 6.29 86.54 0.54 3.93 16 26 C -0.12 -2.37 4.95 30.61 0.15 -2.22 16 27 C -0.13 -2.67 5.54 30.61 0.17 -2.50 16 28 H 0.05 0.56 8.09 -2.38 -0.02 0.54 16 29 H 0.04 0.54 7.87 -2.39 -0.02 0.52 16 30 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.07 1.00 7.79 -2.39 -0.02 0.98 16 32 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 34 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 36 H 0.06 1.27 7.95 -2.39 -0.02 1.25 16 37 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.11 1.34 7.91 -2.39 -0.02 1.32 16 39 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.11 1.33 7.24 -2.39 -0.02 1.32 16 41 H 0.09 2.26 7.85 -2.39 -0.02 2.24 16 42 H 0.05 1.74 7.84 -2.39 -0.02 1.72 16 43 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 44 H 0.05 1.58 6.75 -2.39 -0.02 1.57 16 45 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 47 H 0.01 0.25 8.11 -2.39 -0.02 0.23 16 48 H 0.38 19.51 6.18 -92.71 -0.57 18.93 16 49 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 50 H 0.05 1.71 7.59 -2.39 -0.02 1.69 16 51 H 0.08 2.00 7.68 -2.39 -0.02 1.98 16 52 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 53 H 0.05 1.50 5.95 -2.38 -0.01 1.49 16 54 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 55 H 0.06 1.13 7.87 -2.39 -0.02 1.11 16 Total: -1.00 -71.91 419.78 2.90 -69.02 By element: Atomic # 1 Polarization: 28.88 SS G_CDS: 0.27 Total: 29.15 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: 6.33 Total: -4.17 kcal Atomic # 7 Polarization: -109.05 SS G_CDS: -4.14 Total: -113.18 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -1.59 Total: -29.03 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -71.91 2.90 -69.02 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270855178.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.600 kcal (2) G-P(sol) polarization free energy of solvation -71.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds