Wall clock time and date at job start Tue Mar 31 2020 21:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 110.43741 * 2 1 4 4 C 1.54105 * 110.48733 * 122.54447 * 2 1 3 5 5 O 1.43742 * 107.29457 * 120.70269 * 4 2 1 6 6 C 1.44379 * 106.97508 * 333.49180 * 5 4 2 7 7 H 1.09007 * 110.61670 * 281.39394 * 6 5 4 8 8 C 1.52999 * 110.61649 * 158.56192 * 6 5 4 9 9 C 1.50698 * 109.47596 * 66.45041 * 8 6 5 10 10 O 1.21285 * 119.99944 * 0.02562 * 9 8 6 11 11 N 1.34779 * 120.00288 * 180.02562 * 9 8 6 12 12 C 1.46500 * 119.99916 * 180.02562 * 11 9 8 13 13 C 1.53003 * 109.46713 * 179.97438 * 12 11 9 14 14 C 1.53001 * 109.52299 * 299.91592 * 13 12 11 15 15 C 1.53041 * 109.49626 * 179.83849 * 13 12 11 16 16 C 1.53039 * 109.53979 * 178.68334 * 15 13 12 17 17 C 1.52769 * 109.38129 * 61.23731 * 16 15 13 18 18 N 1.46920 * 109.00791 * 305.58713 * 17 16 15 19 19 C 1.36937 * 120.63221 * 233.57891 * 18 17 16 20 20 H 1.08000 * 119.99092 * 27.46286 * 19 18 17 21 21 C 1.38811 * 120.00020 * 207.73032 * 19 18 17 22 22 N 1.31614 * 120.00241 * 16.98918 * 21 19 18 23 23 Si 1.86800 * 119.99532 * 196.98497 * 21 19 18 24 24 H 1.48506 * 109.47215 * 90.00510 * 23 21 19 25 25 H 1.48506 * 109.46674 * 210.00216 * 23 21 19 26 26 H 1.48494 * 109.47388 * 330.00213 * 23 21 19 27 27 C 1.46930 * 118.73533 * 53.31433 * 18 17 16 28 28 C 1.54807 * 110.48763 * 237.31032 * 2 1 3 29 29 H 1.08998 * 109.47008 * 298.91086 * 1 2 3 30 30 H 1.08993 * 109.46797 * 58.90797 * 1 2 3 31 31 H 1.09003 * 109.46995 * 178.90715 * 1 2 3 32 32 H 1.08996 * 109.46986 * 181.08928 * 3 2 1 33 33 H 1.08996 * 109.47035 * 301.09096 * 3 2 1 34 34 H 1.09003 * 109.47110 * 61.09159 * 3 2 1 35 35 H 1.09010 * 109.87913 * 1.28326 * 4 2 1 36 36 H 1.08994 * 109.88186 * 240.13558 * 4 2 1 37 37 H 1.09001 * 109.47126 * 306.44455 * 8 6 5 38 38 H 1.09008 * 109.46983 * 186.45172 * 8 6 5 39 39 H 0.96996 * 119.99728 * 0.02562 * 11 9 8 40 40 H 1.08994 * 109.47052 * 60.00035 * 12 11 9 41 41 H 1.08992 * 109.46874 * 299.99864 * 12 11 9 42 42 H 1.09001 * 109.46589 * 180.02562 * 14 13 12 43 43 H 1.08996 * 109.47280 * 300.08358 * 14 13 12 44 44 H 1.09004 * 109.46931 * 60.08571 * 14 13 12 45 45 H 1.08997 * 109.46087 * 298.70531 * 15 13 12 46 46 H 1.09005 * 109.46067 * 58.67528 * 15 13 12 47 47 H 1.09001 * 109.49967 * 181.31747 * 16 15 13 48 48 H 1.09005 * 109.49750 * 301.38088 * 16 15 13 49 49 H 1.08996 * 109.50518 * 185.70786 * 17 16 15 50 50 H 1.08996 * 109.42608 * 65.42625 * 17 16 15 51 51 H 0.97000 * 120.00415 * 180.02562 * 22 21 19 52 52 H 1.08999 * 109.59250 * 66.42913 * 27 18 17 53 53 H 1.09007 * 109.58329 * 186.70712 * 27 18 17 54 54 H 1.08999 * 110.90679 * 144.01391 * 28 2 1 55 55 H 1.08998 * 110.90976 * 20.40292 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0643 1.4337 0.0000 4 6 2.0694 -0.7766 1.2169 5 8 2.8754 -1.8547 0.7128 6 6 2.3781 -2.1724 -0.6049 7 1 1.4713 -2.7737 -0.5383 8 6 3.4465 -2.9005 -1.4229 9 6 3.7146 -4.2510 -0.8103 10 8 3.1102 -4.5973 0.1826 11 7 4.6260 -5.0741 -1.3657 12 6 4.8862 -6.3872 -0.7704 13 6 5.9547 -7.1152 -1.5884 14 6 5.4623 -7.2978 -3.0255 15 6 6.2299 -8.4854 -0.9648 16 6 7.2747 -9.2278 -1.8010 17 6 8.5773 -8.4297 -1.8099 18 7 8.2976 -7.0623 -2.2685 19 6 8.9996 -6.5187 -3.3110 20 1 9.4190 -7.1600 -4.0722 21 6 9.1770 -5.1440 -3.3865 22 7 8.9778 -4.3954 -2.3225 23 14 9.6985 -4.3567 -4.9982 24 1 8.4924 -3.9943 -5.7852 25 1 10.4924 -3.1335 -4.7174 26 1 10.5253 -5.3164 -5.7732 27 6 7.2461 -6.2912 -1.5912 28 6 2.0719 -0.7832 -1.2205 29 1 -0.3633 0.4968 0.8996 30 1 -0.3633 0.5307 -0.8800 31 1 -0.3633 -1.0275 -0.0196 32 1 3.1539 1.4154 -0.0195 33 1 1.6939 1.9594 -0.8800 34 1 1.7256 1.9476 0.8996 35 1 1.2391 -1.1757 1.7996 36 1 2.6772 -0.1180 1.8372 37 1 4.3651 -2.3137 -1.4251 38 1 3.0952 -3.0293 -2.4468 39 1 5.1096 -4.7970 -2.1596 40 1 3.9676 -6.9739 -0.7691 41 1 5.2367 -6.2588 0.2536 42 1 6.2240 -7.8170 -3.6073 43 1 4.5434 -7.8841 -3.0230 44 1 5.2691 -6.3216 -3.4702 45 1 6.6041 -8.3538 0.0504 46 1 5.3070 -9.0648 -0.9393 47 1 7.4531 -10.2128 -1.3695 48 1 6.9113 -9.3386 -2.8227 49 1 9.2897 -8.9032 -2.4855 50 1 8.9910 -8.3997 -0.8019 51 1 9.1014 -3.4347 -2.3753 52 1 7.5490 -6.0831 -0.5651 53 1 7.0822 -5.3529 -2.1212 54 1 2.9798 -0.3207 -1.6075 55 1 1.3141 -0.8617 -2.0000 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270973976.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:07 Heat of formation + Delta-G solvation = -102.585508 kcal Electronic energy + Delta-G solvation = -31246.634411 eV Core-core repulsion = 27282.368284 eV Total energy + Delta-G solvation = -3964.266127 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.30813 -40.59704 -39.59952 -36.29530 -35.50964 -34.86689 -33.47420 -32.71998 -31.60844 -28.80307 -28.22704 -27.90145 -27.23680 -26.88765 -26.31531 -23.92967 -22.78783 -21.95155 -21.26166 -20.30976 -19.53366 -18.51119 -18.15649 -17.33740 -17.07836 -16.75051 -16.40836 -16.19872 -15.80755 -15.70395 -15.38126 -15.14541 -14.98340 -14.72862 -14.51368 -14.39861 -14.30963 -14.15850 -13.80565 -13.75776 -13.56922 -13.18636 -12.99266 -12.84276 -12.75141 -12.66201 -12.57212 -12.45654 -12.29627 -12.23822 -12.13008 -11.83564 -11.71543 -11.68939 -11.58681 -11.49786 -11.40046 -11.21363 -10.96497 -10.74218 -10.53348 -10.49289 -9.97737 -8.61396 -7.81419 -5.26862 1.49445 1.51582 1.59522 1.72326 2.31261 2.54825 2.94422 3.30670 3.44706 3.62253 3.69560 3.87617 3.89736 3.96928 4.03095 4.05237 4.05960 4.17874 4.35204 4.37102 4.41959 4.53473 4.57042 4.58846 4.62696 4.74610 4.76310 4.77536 4.78437 4.80398 4.82268 4.86269 5.00791 5.02437 5.03291 5.05551 5.12378 5.13126 5.17802 5.21513 5.30313 5.31067 5.35252 5.42033 5.43356 5.49397 5.57626 5.64993 5.74286 5.80101 6.04629 6.43578 6.60613 7.20049 7.30897 7.90816 8.43949 9.23875 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012547 B = 0.002954 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.035979 B = 9475.104953 C =11049.734570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.097 4.097 3 C -0.134 4.134 4 C 0.045 3.955 5 O -0.397 6.397 6 C 0.093 3.907 7 H 0.065 0.935 8 C -0.135 4.135 9 C 0.508 3.492 10 O -0.579 6.579 11 N -0.719 5.719 12 C 0.144 3.856 13 C -0.090 4.090 14 C -0.117 4.117 15 C -0.096 4.096 16 C -0.123 4.123 17 C 0.136 3.864 18 N -0.605 5.605 19 C -0.256 4.256 20 H 0.064 0.936 21 C -0.045 4.045 22 N -0.932 5.932 23 Si 0.960 3.040 24 H -0.279 1.279 25 H -0.300 1.300 26 H -0.275 1.275 27 C 0.199 3.801 28 C -0.136 4.136 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.083 0.917 37 H 0.103 0.897 38 H 0.139 0.861 39 H 0.407 0.593 40 H 0.071 0.929 41 H 0.039 0.961 42 H 0.056 0.944 43 H 0.062 0.938 44 H 0.042 0.958 45 H 0.047 0.953 46 H 0.078 0.922 47 H 0.079 0.921 48 H 0.066 0.934 49 H 0.052 0.948 50 H 0.004 0.996 51 H 0.249 0.751 52 H -0.024 1.024 53 H 0.067 0.933 54 H 0.083 0.917 55 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.302 5.684 -0.254 18.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.098 4.098 3 C -0.191 4.191 4 C -0.032 4.032 5 O -0.317 6.317 6 C 0.035 3.965 7 H 0.083 0.917 8 C -0.174 4.174 9 C 0.296 3.704 10 O -0.459 6.459 11 N -0.371 5.371 12 C 0.019 3.981 13 C -0.092 4.092 14 C -0.174 4.174 15 C -0.134 4.134 16 C -0.162 4.162 17 C 0.011 3.989 18 N -0.327 5.327 19 C -0.386 4.386 20 H 0.082 0.918 21 C -0.240 4.240 22 N -0.578 5.578 23 Si 0.789 3.211 24 H -0.205 1.205 25 H -0.227 1.227 26 H -0.200 1.200 27 C 0.073 3.927 28 C -0.173 4.173 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.101 0.899 37 H 0.121 0.879 38 H 0.157 0.843 39 H 0.243 0.757 40 H 0.089 0.911 41 H 0.058 0.942 42 H 0.075 0.925 43 H 0.081 0.919 44 H 0.061 0.939 45 H 0.066 0.934 46 H 0.097 0.903 47 H 0.098 0.902 48 H 0.085 0.915 49 H 0.071 0.929 50 H 0.022 0.978 51 H 0.058 0.942 52 H -0.006 1.006 53 H 0.085 0.915 54 H 0.102 0.898 55 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -17.492 5.474 0.565 18.337 hybrid contribution 1.024 0.735 -0.581 1.388 sum -16.467 6.209 -0.016 17.599 Atomic orbital electron populations 1.21858 0.92295 1.02009 1.03091 1.21946 0.97280 0.96647 0.93890 1.21824 1.00626 0.93706 1.02964 1.23481 0.94808 0.88345 0.96544 1.88977 1.56880 1.53389 1.32423 1.22869 0.95250 0.95930 0.82429 0.91677 1.21851 1.01833 0.92074 1.01643 1.21096 0.78691 0.87024 0.83627 1.90659 1.51341 1.76955 1.26948 1.46126 1.41346 1.17651 1.31952 1.21205 0.97821 0.83312 0.95720 1.21329 0.95091 0.96534 0.96243 1.21626 1.00268 1.01000 0.94546 1.21386 0.99425 0.94446 0.98158 1.21849 0.95556 0.98249 1.00501 1.21012 0.95975 0.85797 0.96153 1.44238 1.38812 1.12060 1.37629 1.19452 1.28618 0.90673 0.99851 0.91811 1.25677 1.00972 0.97879 0.99494 1.70202 1.54812 1.04611 1.28150 0.85380 0.77885 0.77517 0.80333 1.20510 1.22727 1.19958 1.20535 0.85179 0.94090 0.92936 1.23328 1.02812 0.93221 0.97986 0.91661 0.90776 0.93022 0.93081 0.91012 0.91626 0.92671 0.89859 0.87882 0.84326 0.75692 0.91123 0.94231 0.92524 0.91865 0.93881 0.93414 0.90350 0.90227 0.91533 0.92945 0.97794 0.94228 1.00636 0.91459 0.89798 0.87889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 8.25 71.98 0.59 -1.15 16 2 C -0.10 -1.59 0.99 -51.19 -0.05 -1.64 16 3 C -0.13 -1.82 8.27 71.98 0.60 -1.23 16 4 C 0.04 1.01 7.04 72.36 0.51 1.52 16 5 O -0.40 -12.35 10.62 -138.12 -1.47 -13.82 16 6 C 0.09 2.29 2.80 31.28 0.09 2.38 16 7 H 0.07 1.69 8.03 -2.38 -0.02 1.67 16 8 C -0.13 -3.34 5.48 29.85 0.16 -3.18 16 9 C 0.51 17.00 7.74 87.66 0.68 17.68 16 10 O -0.58 -23.62 15.56 7.81 0.12 -23.50 16 11 N -0.72 -23.81 5.00 -463.07 -2.31 -26.13 16 12 C 0.14 4.94 4.57 86.38 0.39 5.33 16 13 C -0.09 -3.16 0.53 -52.10 -0.03 -3.18 16 14 C -0.12 -3.76 7.81 71.98 0.56 -3.20 16 15 C -0.10 -3.02 4.71 30.62 0.14 -2.88 16 16 C -0.12 -3.88 5.72 30.53 0.17 -3.71 16 17 C 0.14 5.54 6.49 86.22 0.56 6.10 16 18 N -0.60 -29.16 2.44 -699.93 -1.71 -30.86 16 19 C -0.26 -13.47 9.58 84.03 0.81 -12.66 16 20 H 0.06 3.31 7.89 -2.91 -0.02 3.29 16 21 C -0.04 -2.39 4.92 84.86 0.42 -1.97 16 22 N -0.93 -53.03 11.18 21.65 0.24 -52.79 16 23 Si 0.96 42.98 29.59 68.60 2.03 45.01 16 24 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 25 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 26 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 27 C 0.20 9.13 3.73 86.36 0.32 9.45 16 28 C -0.14 -2.32 5.70 31.89 0.18 -2.13 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.05 0.80 8.13 -2.39 -0.02 0.78 16 33 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.06 1.21 7.69 -2.38 -0.02 1.20 16 36 H 0.08 1.76 7.69 -2.39 -0.02 1.75 16 37 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 38 H 0.14 2.42 8.14 -2.38 -0.02 2.40 16 39 H 0.41 13.18 6.23 -92.71 -0.58 12.61 16 40 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.06 2.01 5.97 -2.39 -0.01 1.99 16 43 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.04 1.38 6.87 -2.39 -0.02 1.36 16 45 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 47 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 48 H 0.07 2.08 6.34 -2.38 -0.02 2.06 16 49 H 0.05 2.09 7.93 -2.39 -0.02 2.07 16 50 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 51 H 0.25 13.80 8.31 -92.71 -0.77 13.03 16 52 H -0.02 -1.30 8.14 -2.39 -0.02 -1.32 16 53 H 0.07 3.37 4.95 -2.38 -0.01 3.36 16 54 H 0.08 1.40 7.79 -2.39 -0.02 1.38 16 55 H 0.10 1.30 7.86 -2.39 -0.02 1.28 16 Total: -1.00 -69.02 413.83 3.29 -65.73 By element: Atomic # 1 Polarization: 30.54 SS G_CDS: 0.27 Total: 30.81 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: 6.11 Total: 5.54 kcal Atomic # 7 Polarization: -106.00 SS G_CDS: -3.78 Total: -109.78 kcal Atomic # 8 Polarization: -35.97 SS G_CDS: -1.34 Total: -37.32 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -69.02 3.29 -65.73 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270973976.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.851 kcal (2) G-P(sol) polarization free energy of solvation -69.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds