Wall clock time and date at job start Tue Mar 31 2020 21:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 110.43262 * 2 1 4 4 C 1.54098 * 110.49057 * 122.54224 * 2 1 3 5 5 O 1.43741 * 107.29262 * 116.64523 * 4 2 1 6 6 C 1.44378 * 106.97610 * 26.51705 * 5 4 2 7 7 H 1.09002 * 110.61932 * 78.43635 * 6 5 4 8 8 C 1.52993 * 110.62012 * 201.27543 * 6 5 4 9 9 C 1.50698 * 109.47482 * 293.54925 * 8 6 5 10 10 O 1.21281 * 119.99634 * 359.97438 * 9 8 6 11 11 N 1.34779 * 120.00008 * 179.97438 * 9 8 6 12 12 C 1.46500 * 119.99665 * 179.97438 * 11 9 8 13 13 C 1.53006 * 109.46965 * 180.02562 * 12 11 9 14 14 C 1.52996 * 109.50009 * 59.99930 * 13 12 11 15 15 C 1.53043 * 109.49532 * 180.02562 * 13 12 11 16 16 C 1.53042 * 109.53349 * 181.31570 * 15 13 12 17 17 C 1.53190 * 109.31321 * 298.63261 * 16 15 13 18 18 N 1.46926 * 108.77866 * 54.63545 * 17 16 15 19 19 C 1.36933 * 120.63061 * 126.42841 * 18 17 16 20 20 H 1.08003 * 120.00450 * 331.82678 * 19 18 17 21 21 C 1.38816 * 119.99918 * 151.81870 * 19 18 17 22 22 N 1.31626 * 119.99796 * 343.07319 * 21 19 18 23 23 Si 1.86800 * 120.00127 * 163.06951 * 21 19 18 24 24 H 1.48510 * 109.46653 * 90.00145 * 23 21 19 25 25 H 1.48499 * 109.46911 * 209.99801 * 23 21 19 26 26 H 1.48497 * 109.47271 * 330.00426 * 23 21 19 27 27 C 1.46934 * 118.76323 * 306.41830 * 18 17 16 28 28 C 1.54808 * 110.48960 * 237.31357 * 2 1 3 29 29 H 1.08997 * 109.47621 * 298.91036 * 1 2 3 30 30 H 1.09000 * 109.47027 * 178.90616 * 1 2 3 31 31 H 1.09002 * 109.47253 * 58.91283 * 1 2 3 32 32 H 1.08994 * 109.47367 * 59.29783 * 3 2 1 33 33 H 1.09008 * 109.46916 * 179.30220 * 3 2 1 34 34 H 1.09004 * 109.47296 * 299.29639 * 3 2 1 35 35 H 1.08997 * 109.87921 * 236.07583 * 4 2 1 36 36 H 1.09004 * 109.87342 * 357.22767 * 4 2 1 37 37 H 1.09007 * 109.46856 * 53.54860 * 8 6 5 38 38 H 1.09001 * 109.47361 * 173.54405 * 8 6 5 39 39 H 0.96998 * 120.00414 * 359.97438 * 11 9 8 40 40 H 1.08997 * 109.47512 * 299.99850 * 12 11 9 41 41 H 1.09004 * 109.47173 * 60.00255 * 12 11 9 42 42 H 1.08998 * 109.46775 * 59.99606 * 14 13 12 43 43 H 1.08993 * 109.47385 * 180.02562 * 14 13 12 44 44 H 1.09007 * 109.47233 * 300.00515 * 14 13 12 45 45 H 1.08997 * 109.45856 * 301.33329 * 15 13 12 46 46 H 1.08991 * 109.46093 * 61.29660 * 15 13 12 47 47 H 1.09001 * 109.49927 * 58.58191 * 16 15 13 48 48 H 1.09002 * 109.49632 * 178.65013 * 16 15 13 49 49 H 1.09001 * 109.58464 * 174.42553 * 17 16 15 50 50 H 1.08999 * 109.58577 * 294.84848 * 17 16 15 51 51 H 0.96998 * 119.99637 * 179.97438 * 22 21 19 52 52 H 1.09001 * 109.55676 * 293.77564 * 27 18 17 53 53 H 1.09002 * 109.61714 * 173.35676 * 27 18 17 54 54 H 1.09001 * 110.90625 * 338.63875 * 28 2 1 55 55 H 1.08996 * 110.90954 * 102.24197 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0641 1.4338 0.0000 4 6 2.0694 -0.7765 1.2168 5 8 2.7955 -1.9100 0.7128 6 6 3.2659 -1.5568 -0.6058 7 1 4.1456 -0.9163 -0.5407 8 6 3.5757 -2.8133 -1.4218 9 6 4.7484 -3.5343 -0.8085 10 8 5.2839 -3.0868 0.1834 11 7 5.2019 -4.6763 -1.3622 12 6 6.3422 -5.3768 -0.7663 13 6 6.6519 -6.6334 -1.5823 14 6 6.9920 -6.2376 -3.0205 15 6 7.8428 -7.3661 -0.9599 16 6 8.1740 -8.6055 -1.7943 17 6 6.9700 -9.5527 -1.7945 18 7 5.7868 -8.8136 -2.2555 19 6 5.0301 -9.2860 -3.2943 20 1 5.4849 -9.8983 -4.0591 21 6 3.6783 -8.9782 -3.3645 22 7 3.0491 -8.5306 -2.2985 23 14 2.7523 -9.1991 -4.9717 24 1 2.1887 -10.5717 -5.0335 25 1 1.6496 -8.2074 -5.0478 26 1 3.6822 -8.9940 -6.1111 27 6 5.4304 -7.5579 -1.5808 28 6 2.0718 -0.7831 -1.2205 29 1 -0.3634 0.4968 0.8995 30 1 -0.3633 -1.0275 -0.0196 31 1 -0.3634 0.5306 -0.8801 32 1 1.6993 1.9574 0.8836 33 1 3.1540 1.4155 0.0125 34 1 1.7197 1.9498 -0.8962 35 1 2.7350 -0.1385 1.7982 36 1 1.2400 -1.1142 1.8383 37 1 2.7055 -3.4698 -1.4224 38 1 3.8183 -2.5307 -2.4462 39 1 4.7733 -5.0344 -2.1553 40 1 7.2124 -4.7204 -0.7665 41 1 6.1002 -5.6590 0.2584 42 1 7.8620 -5.5810 -3.0205 43 1 7.2121 -7.1331 -3.6015 44 1 6.1436 -5.7163 -3.4642 45 1 8.7066 -6.7017 -0.9378 46 1 7.5918 -7.6690 0.0566 47 1 8.4010 -8.3054 -2.8173 48 1 9.0371 -9.1136 -1.3641 49 1 7.1632 -10.3890 -2.4664 50 1 6.7978 -9.9249 -0.7846 51 1 2.1046 -8.3152 -2.3476 52 1 5.1320 -7.7676 -0.5536 53 1 4.6082 -7.0779 -2.1115 54 1 1.3197 -1.4713 -1.6062 55 1 2.4102 -0.1017 -2.0009 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270973978.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:16 Heat of formation + Delta-G solvation = -102.525517 kcal Electronic energy + Delta-G solvation = -31243.062382 eV Core-core repulsion = 27278.798857 eV Total energy + Delta-G solvation = -3964.263526 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.30744 -40.59346 -39.59277 -36.29148 -35.51063 -34.85924 -33.46866 -32.71377 -31.59788 -28.80328 -28.22915 -27.89808 -27.23227 -26.88697 -26.31545 -23.92171 -22.78810 -21.95554 -21.26118 -20.31042 -19.53355 -18.50930 -18.15658 -17.33731 -17.07505 -16.74713 -16.40826 -16.19732 -15.80907 -15.70463 -15.37350 -15.14514 -14.98340 -14.72523 -14.50746 -14.39926 -14.31220 -14.15789 -13.80099 -13.75405 -13.57293 -13.17986 -13.00616 -12.83580 -12.75080 -12.66281 -12.55095 -12.45489 -12.30178 -12.25449 -12.12495 -11.83985 -11.71374 -11.69314 -11.58604 -11.49619 -11.40035 -11.21548 -10.95897 -10.74269 -10.53290 -10.49430 -9.97672 -8.60349 -7.81457 -5.27035 1.48699 1.51503 1.60364 1.72376 2.31251 2.54974 2.94454 3.31080 3.44622 3.62289 3.69411 3.87569 3.89798 3.97061 4.03061 4.05579 4.06081 4.18074 4.35279 4.37010 4.41923 4.53523 4.57167 4.58839 4.62629 4.74630 4.76100 4.77581 4.78473 4.80303 4.82469 4.86357 5.00529 5.02423 5.03200 5.05678 5.12427 5.13126 5.17905 5.21400 5.30256 5.31118 5.35400 5.42212 5.43223 5.49426 5.57702 5.65078 5.74388 5.79873 6.04611 6.43884 6.60734 7.20151 7.30975 7.90919 8.44283 9.23826 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012548 B = 0.002952 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.966100 B = 9481.861617 C =11056.127635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.097 4.097 3 C -0.135 4.135 4 C 0.045 3.955 5 O -0.397 6.397 6 C 0.093 3.907 7 H 0.065 0.935 8 C -0.134 4.134 9 C 0.508 3.492 10 O -0.579 6.579 11 N -0.719 5.719 12 C 0.144 3.856 13 C -0.090 4.090 14 C -0.117 4.117 15 C -0.096 4.096 16 C -0.123 4.123 17 C 0.136 3.864 18 N -0.605 5.605 19 C -0.256 4.256 20 H 0.064 0.936 21 C -0.045 4.045 22 N -0.932 5.932 23 Si 0.960 3.040 24 H -0.292 1.292 25 H -0.290 1.290 26 H -0.270 1.270 27 C 0.199 3.801 28 C -0.136 4.136 29 H 0.065 0.935 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.050 0.950 34 H 0.073 0.927 35 H 0.055 0.945 36 H 0.083 0.917 37 H 0.103 0.897 38 H 0.139 0.861 39 H 0.407 0.593 40 H 0.071 0.929 41 H 0.039 0.961 42 H 0.062 0.938 43 H 0.055 0.945 44 H 0.043 0.957 45 H 0.078 0.922 46 H 0.047 0.953 47 H 0.066 0.934 48 H 0.079 0.921 49 H 0.052 0.948 50 H 0.004 0.996 51 H 0.249 0.751 52 H -0.024 1.024 53 H 0.067 0.933 54 H 0.083 0.917 55 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.668 18.270 -0.325 18.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.098 4.098 3 C -0.192 4.192 4 C -0.032 4.032 5 O -0.317 6.317 6 C 0.035 3.965 7 H 0.083 0.917 8 C -0.174 4.174 9 C 0.296 3.704 10 O -0.459 6.459 11 N -0.371 5.371 12 C 0.019 3.981 13 C -0.092 4.092 14 C -0.174 4.174 15 C -0.134 4.134 16 C -0.161 4.161 17 C 0.010 3.990 18 N -0.327 5.327 19 C -0.387 4.387 20 H 0.081 0.919 21 C -0.240 4.240 22 N -0.578 5.578 23 Si 0.788 3.212 24 H -0.220 1.220 25 H -0.216 1.216 26 H -0.194 1.194 27 C 0.073 3.927 28 C -0.173 4.173 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.101 0.899 37 H 0.121 0.879 38 H 0.157 0.843 39 H 0.243 0.757 40 H 0.089 0.911 41 H 0.058 0.942 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.062 0.938 45 H 0.096 0.904 46 H 0.066 0.934 47 H 0.085 0.915 48 H 0.097 0.903 49 H 0.071 0.929 50 H 0.022 0.978 51 H 0.058 0.942 52 H -0.006 1.006 53 H 0.085 0.915 54 H 0.102 0.898 55 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.931 18.393 0.491 18.423 hybrid contribution -1.055 -0.733 -0.565 1.403 sum -0.124 17.660 -0.073 17.660 Atomic orbital electron populations 1.21827 0.92354 1.01985 1.02964 1.21944 0.97416 0.96513 0.93891 1.21857 1.00625 0.93641 1.03119 1.23478 0.95441 0.87712 0.96547 1.88977 1.72253 1.38088 1.32355 1.22864 0.96991 0.94207 0.82422 0.91703 1.21844 0.96685 0.97195 1.01660 1.21091 0.84934 0.80789 0.83618 1.90659 1.60464 1.67781 1.26999 1.46124 1.34059 1.24845 1.32040 1.21208 0.88473 0.92665 0.95715 1.21331 0.97827 0.93778 0.96260 1.21626 1.00422 1.00869 0.94527 1.21385 0.96825 0.97040 0.98169 1.21918 0.97521 0.96199 1.00487 1.21103 0.87637 0.94122 0.96109 1.44246 1.28862 1.21767 1.37860 1.19432 0.89963 1.29345 0.99925 0.91853 1.25692 0.96890 1.01957 0.99482 1.70207 1.08996 1.50411 1.28156 0.85405 0.78225 0.76897 0.80658 1.21979 1.21609 1.19440 1.20525 0.93721 0.85489 0.92927 1.23328 0.96804 0.99228 0.97989 0.91631 0.93090 0.91012 0.91622 0.93042 0.90780 0.92668 0.89863 0.87901 0.84299 0.75680 0.91120 0.94247 0.91876 0.92552 0.93823 0.90358 0.93425 0.91531 0.90270 0.92929 0.97774 0.94218 1.00636 0.91518 0.89808 0.87883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.82 8.26 71.98 0.59 -1.23 16 2 C -0.10 -1.59 0.99 -51.19 -0.05 -1.64 16 3 C -0.14 -1.74 8.26 71.98 0.59 -1.14 16 4 C 0.04 1.02 7.04 72.35 0.51 1.52 16 5 O -0.40 -12.36 10.62 -138.12 -1.47 -13.82 16 6 C 0.09 2.29 2.79 31.27 0.09 2.37 16 7 H 0.07 1.69 8.03 -2.39 -0.02 1.67 16 8 C -0.13 -3.33 5.49 29.84 0.16 -3.17 16 9 C 0.51 16.98 7.74 87.66 0.68 17.66 16 10 O -0.58 -23.61 15.56 7.83 0.12 -23.49 16 11 N -0.72 -23.76 5.00 -463.05 -2.31 -26.08 16 12 C 0.14 4.93 4.57 86.38 0.39 5.33 16 13 C -0.09 -3.15 0.53 -52.10 -0.03 -3.18 16 14 C -0.12 -3.76 7.81 71.98 0.56 -3.20 16 15 C -0.10 -3.02 4.71 30.62 0.14 -2.88 16 16 C -0.12 -3.88 5.74 30.67 0.18 -3.70 16 17 C 0.14 5.53 6.52 86.36 0.56 6.10 16 18 N -0.60 -29.17 2.43 -699.08 -1.70 -30.87 16 19 C -0.26 -13.51 9.58 84.04 0.81 -12.71 16 20 H 0.06 3.28 7.89 -2.91 -0.02 3.26 16 21 C -0.04 -2.39 4.92 84.86 0.42 -1.97 16 22 N -0.93 -53.03 11.20 21.65 0.24 -52.78 16 23 Si 0.96 42.95 29.59 68.60 2.03 44.98 16 24 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 25 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 26 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 27 C 0.20 9.16 3.72 86.36 0.32 9.48 16 28 C -0.14 -2.32 5.71 31.89 0.18 -2.13 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.05 0.80 8.13 -2.39 -0.02 0.78 16 31 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 34 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 35 H 0.06 1.22 7.69 -2.39 -0.02 1.20 16 36 H 0.08 1.76 7.69 -2.38 -0.02 1.75 16 37 H 0.10 2.59 8.14 -2.38 -0.02 2.57 16 38 H 0.14 2.41 8.14 -2.39 -0.02 2.39 16 39 H 0.41 13.13 6.22 -92.71 -0.58 12.56 16 40 H 0.07 2.24 8.14 -2.39 -0.02 2.23 16 41 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 42 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.06 2.00 5.97 -2.39 -0.01 1.99 16 44 H 0.04 1.39 6.86 -2.38 -0.02 1.37 16 45 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 46 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 47 H 0.07 2.09 6.33 -2.39 -0.02 2.07 16 48 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 49 H 0.05 2.09 7.93 -2.39 -0.02 2.07 16 50 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 51 H 0.25 13.79 8.31 -92.71 -0.77 13.02 16 52 H -0.02 -1.30 8.14 -2.39 -0.02 -1.32 16 53 H 0.07 3.34 4.97 -2.39 -0.01 3.32 16 54 H 0.08 1.40 7.78 -2.39 -0.02 1.38 16 55 H 0.10 1.30 7.87 -2.39 -0.02 1.28 16 Total: -1.00 -69.11 413.88 3.30 -65.81 By element: Atomic # 1 Polarization: 30.48 SS G_CDS: 0.27 Total: 30.75 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: 6.12 Total: 5.51 kcal Atomic # 7 Polarization: -105.96 SS G_CDS: -3.77 Total: -109.73 kcal Atomic # 8 Polarization: -35.97 SS G_CDS: -1.34 Total: -37.31 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -69.11 3.30 -65.81 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270973978.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.715 kcal (2) G-P(sol) polarization free energy of solvation -69.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds