Wall clock time and date at job start Tue Mar 31 2020 21:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50701 * 119.99966 * 2 1 4 4 C 1.52996 * 109.46984 * 239.99663 * 3 2 1 5 5 C 1.52998 * 109.47197 * 119.99385 * 3 2 1 6 6 C 1.53003 * 109.46900 * 60.00194 * 5 3 2 7 7 O 1.42896 * 109.47205 * 180.02562 * 6 5 3 8 8 C 1.42898 * 114.00277 * 179.97438 * 7 6 5 9 9 C 1.50702 * 109.47106 * 359.97438 * 3 2 1 10 10 O 1.21282 * 119.99680 * 119.99994 * 9 3 2 11 11 N 1.34777 * 119.99821 * 300.00143 * 9 3 2 12 12 C 1.46501 * 119.99830 * 180.02562 * 11 9 3 13 13 C 1.52996 * 109.47390 * 179.97438 * 12 11 9 14 14 C 1.52995 * 109.49613 * 300.00245 * 13 12 11 15 15 C 1.53035 * 109.52514 * 179.97438 * 13 12 11 16 16 C 1.53045 * 109.53798 * 178.66989 * 15 13 12 17 17 C 1.53188 * 109.31288 * 61.36074 * 16 15 13 18 18 N 1.46921 * 108.77940 * 305.36803 * 17 16 15 19 19 C 1.36941 * 120.63090 * 233.63362 * 18 17 16 20 20 H 1.07997 * 119.99831 * 151.81462 * 19 18 17 21 21 C 1.38811 * 119.99558 * 331.80989 * 19 18 17 22 22 N 1.31616 * 120.00644 * 343.08119 * 21 19 18 23 23 Si 1.86801 * 119.99532 * 163.08609 * 21 19 18 24 24 H 1.48498 * 109.47169 * 60.00057 * 23 21 19 25 25 H 1.48504 * 109.46849 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47135 * 299.99956 * 23 21 19 27 27 C 1.46931 * 118.73766 * 53.60679 * 18 17 16 28 28 H 1.07998 * 119.99997 * 180.02562 * 1 2 3 29 29 H 1.08004 * 120.00036 * 0.02562 * 1 2 3 30 30 H 1.07996 * 119.99962 * 179.97438 * 2 1 3 31 31 H 1.08994 * 109.47308 * 179.97438 * 4 3 2 32 32 H 1.09001 * 109.47200 * 300.00083 * 4 3 2 33 33 H 1.09002 * 109.47603 * 59.99722 * 4 3 2 34 34 H 1.09005 * 109.47241 * 179.97438 * 5 3 2 35 35 H 1.08995 * 109.47359 * 300.00179 * 5 3 2 36 36 H 1.09004 * 109.47009 * 299.99311 * 6 5 3 37 37 H 1.09002 * 109.47460 * 59.99684 * 6 5 3 38 38 H 1.09006 * 109.47568 * 179.97438 * 8 7 6 39 39 H 1.09000 * 109.47336 * 299.99864 * 8 7 6 40 40 H 1.09004 * 109.47195 * 60.00071 * 8 7 6 41 41 H 0.96998 * 120.00473 * 0.02562 * 11 9 3 42 42 H 1.09008 * 109.47267 * 59.99622 * 12 11 9 43 43 H 1.09002 * 109.47163 * 300.00071 * 12 11 9 44 44 H 1.09004 * 109.47497 * 180.02562 * 14 13 12 45 45 H 1.09002 * 109.47750 * 60.05936 * 14 13 12 46 46 H 1.09001 * 109.46937 * 300.06171 * 14 13 12 47 47 H 1.09007 * 109.46349 * 298.68400 * 15 13 12 48 48 H 1.08998 * 109.46501 * 58.64398 * 15 13 12 49 49 H 1.08997 * 109.49263 * 301.40974 * 16 15 13 50 50 H 1.08998 * 109.49588 * 181.31517 * 16 15 13 51 51 H 1.09006 * 109.58777 * 185.57322 * 17 16 15 52 52 H 1.09005 * 109.70266 * 65.22714 * 17 16 15 53 53 H 0.97000 * 120.00370 * 180.02562 * 22 21 19 54 54 H 1.08995 * 109.58365 * 186.60734 * 27 18 17 55 55 H 1.08996 * 109.58664 * 66.18371 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9432 1.3861 -1.2492 5 6 2.9430 1.3862 1.2493 6 6 3.9373 0.2233 1.2494 7 8 4.7584 0.2987 2.4165 8 6 5.7266 -0.7477 2.5146 9 6 1.0842 2.4506 -0.0006 10 8 1.0890 3.2529 0.9088 11 7 0.2031 2.5832 -1.0118 12 6 -0.7485 3.6971 -1.0127 13 6 -1.6273 3.6161 -2.2625 14 6 -0.7475 3.6964 -3.5115 15 6 -2.6224 4.7788 -2.2643 16 6 -3.4795 4.7170 -3.5307 17 6 -4.2693 3.4045 -3.5444 18 7 -3.3292 2.2852 -3.3968 19 6 -3.3222 1.2561 -4.3003 20 1 -2.4121 0.7043 -4.4832 21 6 -4.4850 0.9224 -4.9811 22 7 -5.6505 1.3463 -4.5403 23 14 -4.3957 -0.1286 -6.5228 24 1 -3.7841 -1.4408 -6.1926 25 1 -5.7650 -0.3415 -7.0567 26 1 -3.5672 0.5607 -7.5444 27 6 -2.3963 2.2911 -2.2617 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 3.4878 2.3302 -1.2495 32 1 3.6515 0.5576 -1.2491 33 1 2.3166 1.3283 -2.1392 34 1 3.4884 2.3301 1.2491 35 1 2.3164 1.3285 2.1392 36 1 3.3923 -0.7207 1.2495 37 1 4.5640 0.2810 0.3594 38 1 6.3095 -0.6191 3.4267 39 1 5.2184 -1.7117 2.5407 40 1 6.3908 -0.7103 1.6511 41 1 0.1990 1.9413 -1.7390 42 1 -0.2032 4.6410 -1.0130 43 1 -1.3755 3.6400 -0.1229 44 1 -1.3740 3.6391 -4.4017 45 1 -0.0401 2.8671 -3.5118 46 1 -0.2013 4.6397 -3.5111 47 1 -3.2654 4.7079 -1.3869 48 1 -2.0780 5.7228 -2.2399 49 1 -2.8351 4.7630 -4.4086 50 1 -4.1720 5.5586 -3.5427 51 1 -4.8047 3.3100 -4.4892 52 1 -4.9810 3.3953 -2.7188 53 1 -6.4631 1.1128 -5.0158 54 1 -1.6957 1.4620 -2.3603 55 1 -2.9535 2.1925 -1.3302 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270983939.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:27 Heat of formation + Delta-G solvation = -67.448341 kcal Electronic energy + Delta-G solvation = -31507.045460 eV Core-core repulsion = 27544.302995 eV Total energy + Delta-G solvation = -3962.742465 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -41.74803 -40.11037 -38.90856 -37.12721 -36.49587 -34.80911 -32.82385 -32.32655 -32.14303 -30.06059 -27.99295 -27.33564 -27.21105 -26.98225 -25.57289 -23.87938 -22.93165 -22.62407 -21.85652 -20.21669 -19.18611 -18.55497 -17.81157 -17.61179 -17.08120 -16.82889 -16.80834 -16.51668 -15.98397 -15.71121 -15.59482 -15.31731 -15.10050 -14.80464 -14.73748 -14.59260 -14.28129 -14.13161 -13.79284 -13.71409 -13.48830 -13.23055 -13.01087 -12.94246 -12.78051 -12.71589 -12.58372 -12.52732 -12.29891 -12.20788 -12.17136 -11.94721 -11.91078 -11.75637 -11.61608 -11.44445 -11.21085 -10.98176 -10.71164 -10.53638 -10.47303 -10.39411 -9.98375 -8.61917 -7.82702 -5.27688 1.27300 1.48802 1.51119 1.57183 1.59237 2.12496 2.53747 2.89641 3.32199 3.50720 3.60517 3.67688 3.91864 3.94252 3.96678 3.98323 4.16583 4.23778 4.27128 4.38025 4.41201 4.47994 4.51233 4.58075 4.59194 4.60350 4.72014 4.75398 4.81448 4.82318 4.85179 4.89286 4.94172 4.96697 5.01341 5.06049 5.11187 5.15814 5.16664 5.22523 5.29858 5.34676 5.39329 5.47750 5.53407 5.60371 5.64595 5.70451 5.70980 5.82626 6.27833 6.42450 6.50714 7.18791 7.18991 7.90495 8.43227 9.23380 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015171 B = 0.002827 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.198397 B = 9900.466518 C =11068.419799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.144 4.144 3 C -0.041 4.041 4 C -0.141 4.141 5 C -0.085 4.085 6 C 0.062 3.938 7 O -0.422 6.422 8 C 0.025 3.975 9 C 0.523 3.477 10 O -0.579 6.579 11 N -0.712 5.712 12 C 0.140 3.860 13 C -0.078 4.078 14 C -0.123 4.123 15 C -0.094 4.094 16 C -0.131 4.131 17 C 0.175 3.825 18 N -0.600 5.600 19 C -0.251 4.251 20 H 0.070 0.930 21 C -0.052 4.052 22 N -0.937 5.937 23 Si 0.962 3.038 24 H -0.275 1.275 25 H -0.300 1.300 26 H -0.278 1.278 27 C 0.162 3.838 28 H 0.112 0.888 29 H 0.090 0.910 30 H 0.148 0.852 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.054 0.946 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.050 0.950 40 H 0.054 0.946 41 H 0.410 0.590 42 H 0.071 0.929 43 H 0.053 0.947 44 H 0.051 0.949 45 H 0.053 0.947 46 H 0.062 0.938 47 H 0.050 0.950 48 H 0.077 0.923 49 H 0.061 0.939 50 H 0.064 0.936 51 H 0.051 0.949 52 H -0.011 1.011 53 H 0.247 0.753 54 H 0.056 0.944 55 H 0.000 1.000 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.572 -1.322 7.131 21.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.162 4.162 3 C -0.044 4.044 4 C -0.198 4.198 5 C -0.123 4.123 6 C -0.014 4.014 7 O -0.342 6.342 8 C -0.071 4.071 9 C 0.310 3.690 10 O -0.459 6.459 11 N -0.365 5.365 12 C 0.015 3.985 13 C -0.080 4.080 14 C -0.181 4.181 15 C -0.132 4.132 16 C -0.170 4.170 17 C 0.049 3.951 18 N -0.323 5.323 19 C -0.382 4.382 20 H 0.088 0.912 21 C -0.247 4.247 22 N -0.583 5.583 23 Si 0.791 3.209 24 H -0.201 1.201 25 H -0.227 1.227 26 H -0.204 1.204 27 C 0.036 3.964 28 H 0.130 0.870 29 H 0.108 0.892 30 H 0.166 0.834 31 H 0.084 0.916 32 H 0.114 0.886 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.111 0.889 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.248 0.752 42 H 0.090 0.910 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.072 0.928 46 H 0.081 0.919 47 H 0.069 0.931 48 H 0.096 0.904 49 H 0.079 0.921 50 H 0.083 0.917 51 H 0.070 0.930 52 H 0.007 0.993 53 H 0.056 0.944 54 H 0.074 0.926 55 H 0.018 0.982 Dipole moment (debyes) X Y Z Total from point charges 20.387 -0.646 7.826 21.847 hybrid contribution -0.979 -1.005 -1.051 1.752 sum 19.408 -1.651 6.775 20.623 Atomic orbital electron populations 1.24406 0.96777 1.03126 0.99840 1.22848 0.95314 0.97116 1.00913 1.19862 0.94590 0.91335 0.98607 1.21962 0.99567 1.04078 0.94236 1.21150 0.96246 0.99033 0.95883 1.22701 0.92431 0.98107 0.88131 1.87838 1.50264 1.51482 1.44599 1.22925 0.91273 0.89892 1.02974 1.20803 0.81068 0.86102 0.81035 1.90678 1.72249 1.45776 1.37209 1.46229 1.34920 1.30071 1.25236 1.21281 0.90291 0.89639 0.97243 1.21126 0.95109 0.97181 0.94557 1.21689 0.98278 1.01189 0.96906 1.21363 0.96824 0.97409 0.97562 1.22042 0.98993 0.97769 0.98175 1.20599 0.90313 0.85625 0.98586 1.44172 1.40260 1.21077 1.26751 1.19438 0.93742 1.09773 1.15219 0.91193 1.25760 0.94908 1.00956 1.03123 1.70188 0.97224 1.50706 1.40219 0.85416 0.75986 0.79099 0.80401 1.20057 1.22682 1.20391 1.20965 0.91476 0.95097 0.88842 0.86967 0.89174 0.83405 0.91630 0.88623 0.91173 0.91560 0.92679 0.91705 0.90895 0.88923 0.93107 0.92779 0.75233 0.91030 0.92874 0.92971 0.92826 0.91937 0.93085 0.90423 0.92053 0.91717 0.93028 0.99325 0.94366 0.92569 0.98189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.55 13.17 67.78 0.89 -3.66 16 2 C -0.14 -2.60 8.00 25.64 0.21 -2.40 16 3 C -0.04 -0.80 0.62 -53.68 -0.03 -0.84 16 4 C -0.14 -2.03 8.00 71.98 0.58 -1.45 16 5 C -0.09 -1.80 3.92 30.59 0.12 -1.68 16 6 C 0.06 0.99 5.33 71.98 0.38 1.37 16 7 O -0.42 -8.29 10.70 -148.98 -1.59 -9.88 16 8 C 0.03 0.30 11.01 113.37 1.25 1.55 16 9 C 0.52 13.98 5.34 87.66 0.47 14.45 16 10 O -0.58 -20.03 15.98 -3.04 -0.05 -20.08 16 11 N -0.71 -17.90 3.16 -463.05 -1.47 -19.37 16 12 C 0.14 3.85 4.57 86.38 0.39 4.25 16 13 C -0.08 -2.35 0.53 -52.11 -0.03 -2.37 16 14 C -0.12 -3.48 7.81 71.98 0.56 -2.92 16 15 C -0.09 -2.86 4.71 30.62 0.14 -2.72 16 16 C -0.13 -4.67 5.74 30.67 0.18 -4.49 16 17 C 0.17 8.21 5.30 86.36 0.46 8.67 16 18 N -0.60 -28.35 2.43 -699.11 -1.70 -30.06 16 19 C -0.25 -13.05 9.58 84.03 0.81 -12.25 16 20 H 0.07 3.47 7.88 -2.91 -0.02 3.45 16 21 C -0.05 -2.84 4.92 84.86 0.42 -2.42 16 22 N -0.94 -54.70 11.20 21.65 0.24 -54.46 16 23 Si 0.96 43.58 29.59 68.60 2.03 45.61 16 24 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 25 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 26 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 27 C 0.16 6.22 4.94 86.36 0.43 6.65 16 28 H 0.11 2.32 8.06 -2.91 -0.02 2.29 16 29 H 0.09 2.42 5.18 -2.91 -0.02 2.40 16 30 H 0.15 1.86 7.00 -2.91 -0.02 1.84 16 31 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.10 0.92 6.43 -2.39 -0.02 0.90 16 33 H 0.07 0.98 7.56 -2.39 -0.02 0.96 16 34 H 0.07 1.57 8.10 -2.38 -0.02 1.55 16 35 H 0.05 1.42 8.10 -2.39 -0.02 1.40 16 36 H 0.06 0.86 6.62 -2.39 -0.02 0.84 16 37 H 0.07 0.86 6.43 -2.39 -0.02 0.84 16 38 H 0.09 0.91 8.14 -2.38 -0.02 0.90 16 39 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.41 9.54 4.98 -92.71 -0.46 9.08 16 42 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 43 H 0.05 1.61 8.14 -2.39 -0.02 1.60 16 44 H 0.05 1.77 5.97 -2.38 -0.01 1.76 16 45 H 0.05 1.38 6.87 -2.39 -0.02 1.36 16 46 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 47 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 48 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 49 H 0.06 2.18 6.33 -2.39 -0.02 2.16 16 50 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 51 H 0.05 2.77 6.06 -2.38 -0.01 2.76 16 52 H -0.01 -0.58 8.14 -2.38 -0.02 -0.60 16 53 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 54 H 0.06 2.05 6.84 -2.39 -0.02 2.04 16 55 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 Total: -1.00 -67.75 412.29 5.07 -62.68 By element: Atomic # 1 Polarization: 25.43 SS G_CDS: 0.39 Total: 25.82 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: 7.22 Total: -0.27 kcal Atomic # 7 Polarization: -100.96 SS G_CDS: -2.92 Total: -103.89 kcal Atomic # 8 Polarization: -28.32 SS G_CDS: -1.64 Total: -29.96 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -67.75 5.07 -62.68 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270983939.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.766 kcal (2) G-P(sol) polarization free energy of solvation -67.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds