Wall clock time and date at job start Tue Mar 31 2020 21:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50701 * 120.00296 * 2 1 4 4 C 1.53000 * 109.46871 * 240.00086 * 3 2 1 5 5 C 1.53000 * 109.47112 * 120.00036 * 3 2 1 6 6 C 1.53005 * 109.47173 * 59.99940 * 5 3 2 7 7 O 1.42900 * 109.47094 * 179.97438 * 6 5 3 8 8 C 1.42898 * 113.99852 * 180.02562 * 7 6 5 9 9 C 1.50701 * 109.47193 * 0.02562 * 3 2 1 10 10 O 1.21279 * 120.00228 * 119.99632 * 9 3 2 11 11 N 1.34777 * 119.99502 * 300.00485 * 9 3 2 12 12 C 1.46504 * 119.99784 * 180.02562 * 11 9 3 13 13 C 1.53000 * 109.47296 * 179.97438 * 12 11 9 14 14 C 1.52998 * 109.49666 * 60.06277 * 13 12 11 15 15 C 1.53042 * 109.49694 * 180.16011 * 13 12 11 16 16 C 1.53038 * 109.53596 * 181.31763 * 15 13 12 17 17 C 1.53187 * 109.31298 * 298.63231 * 16 15 13 18 18 N 1.46930 * 108.77299 * 54.63701 * 17 16 15 19 19 C 1.36940 * 120.62663 * 126.41357 * 18 17 16 20 20 H 1.07998 * 120.00361 * 331.80043 * 19 18 17 21 21 C 1.38821 * 119.99547 * 151.80363 * 19 18 17 22 22 N 1.31613 * 120.00299 * 343.08036 * 21 19 18 23 23 Si 1.86800 * 119.99709 * 163.08495 * 21 19 18 24 24 H 1.48500 * 109.47394 * 59.99790 * 23 21 19 25 25 H 1.48496 * 109.47046 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47047 * 299.99885 * 23 21 19 27 27 C 1.46920 * 118.73907 * 306.39003 * 18 17 16 28 28 H 1.07998 * 120.00628 * 180.02562 * 1 2 3 29 29 H 1.08007 * 119.99627 * 359.97438 * 1 2 3 30 30 H 1.08007 * 119.99996 * 179.97438 * 2 1 3 31 31 H 1.09004 * 109.46825 * 180.02562 * 4 3 2 32 32 H 1.09001 * 109.47087 * 299.99360 * 4 3 2 33 33 H 1.09000 * 109.47484 * 60.00271 * 4 3 2 34 34 H 1.09004 * 109.47245 * 179.97438 * 5 3 2 35 35 H 1.08997 * 109.47417 * 300.00106 * 5 3 2 36 36 H 1.09004 * 109.47064 * 300.00146 * 6 5 3 37 37 H 1.09006 * 109.46717 * 59.99941 * 6 5 3 38 38 H 1.08994 * 109.47237 * 60.00195 * 8 7 6 39 39 H 1.09003 * 109.46943 * 180.02562 * 8 7 6 40 40 H 1.09006 * 109.47196 * 300.00236 * 8 7 6 41 41 H 0.96993 * 120.00681 * 359.97438 * 11 9 3 42 42 H 1.09004 * 109.47083 * 59.99216 * 12 11 9 43 43 H 1.08997 * 109.46670 * 299.99640 * 12 11 9 44 44 H 1.09002 * 109.47238 * 59.99670 * 14 13 12 45 45 H 1.09001 * 109.47114 * 179.97438 * 14 13 12 46 46 H 1.09002 * 109.47128 * 300.00156 * 14 13 12 47 47 H 1.08997 * 109.45753 * 301.33718 * 15 13 12 48 48 H 1.09000 * 109.46058 * 61.29431 * 15 13 12 49 49 H 1.09000 * 109.49511 * 178.68051 * 16 15 13 50 50 H 1.09001 * 109.49564 * 58.58874 * 16 15 13 51 51 H 1.08999 * 109.58813 * 294.85120 * 17 16 15 52 52 H 1.09004 * 109.58932 * 174.42346 * 17 16 15 53 53 H 0.96992 * 120.00467 * 180.02562 * 22 21 19 54 54 H 1.09001 * 109.58591 * 293.82229 * 27 18 17 55 55 H 1.09007 * 109.58428 * 173.39891 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3860 -1.2493 5 6 2.9432 1.3861 1.2492 6 6 3.9374 0.2230 1.2492 7 8 4.7593 0.2991 2.4157 8 6 5.7283 -0.7467 2.5131 9 6 1.0843 2.4506 0.0006 10 8 1.0897 3.2525 0.9104 11 7 0.2024 2.5837 -1.0098 12 6 -0.7492 3.6976 -1.0095 13 6 -1.6290 3.6171 -2.2587 14 6 -2.3960 2.2932 -2.2586 15 6 -2.6207 4.7827 -2.2610 16 6 -3.5230 4.6846 -3.4932 17 6 -2.6645 4.7777 -4.7585 18 7 -1.6159 3.7505 -4.6951 19 6 -1.4494 2.8593 -5.7213 20 1 -2.2915 2.5825 -6.3382 21 6 -0.1980 2.3115 -5.9687 22 7 0.8784 2.8733 -5.4609 23 14 -0.0420 0.7770 -7.0225 24 1 -0.5888 1.0484 -8.3762 25 1 1.3891 0.3969 -7.1343 26 1 -0.8021 -0.3337 -6.3951 27 6 -0.7491 3.6981 -3.5100 28 1 -0.5401 -0.9352 0.0004 29 1 -0.5400 0.9354 0.0004 30 1 1.8500 -0.9354 0.0004 31 1 3.4885 2.3298 -1.2490 32 1 3.6515 0.5575 -1.2492 33 1 2.3165 1.3284 -2.1393 34 1 3.4886 2.3298 1.2490 35 1 2.3166 1.3283 2.1392 36 1 3.3923 -0.7209 1.2492 37 1 4.5640 0.2808 0.3592 38 1 6.3917 -0.7090 1.6492 39 1 6.3111 -0.6182 3.4252 40 1 5.2207 -1.7111 2.5395 41 1 0.1982 1.9425 -1.7376 42 1 -0.2038 4.6414 -1.0098 43 1 -1.3754 3.6401 -0.1193 44 1 -3.0228 2.2365 -1.3686 45 1 -3.0230 2.2365 -3.1484 46 1 -1.6889 1.4637 -2.2583 47 1 -3.2316 4.7414 -1.3593 48 1 -2.0734 5.7251 -2.2857 49 1 -4.2442 5.5018 -3.4819 50 1 -4.0520 3.7317 -3.4817 51 1 -2.2059 5.7648 -4.8171 52 1 -3.2882 4.6095 -5.6365 53 1 1.7527 2.4909 -5.6340 54 1 -0.1343 4.5972 -3.4668 55 1 -0.1089 2.8174 -3.5642 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270983940.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:32 Heat of formation + Delta-G solvation = -66.789785 kcal Electronic energy + Delta-G solvation = -32025.862277 eV Core-core repulsion = 28063.148369 eV Total energy + Delta-G solvation = -3962.713908 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.73776 -40.08325 -38.92040 -37.12755 -36.37881 -34.90090 -33.11346 -32.45428 -31.59659 -30.08434 -27.99786 -27.38647 -27.23104 -26.97866 -25.59725 -23.91853 -22.94269 -22.51233 -21.77485 -20.23560 -19.31891 -18.49090 -17.80458 -17.59021 -17.11078 -16.91292 -16.79101 -16.44294 -15.90437 -15.72252 -15.47709 -15.35731 -15.06283 -14.81269 -14.69590 -14.59761 -14.43025 -14.10420 -13.81536 -13.75728 -13.49252 -13.15563 -13.03281 -13.00233 -12.80867 -12.67691 -12.59142 -12.54363 -12.30310 -12.25768 -12.15369 -11.92652 -11.84064 -11.71800 -11.63739 -11.39708 -11.20489 -10.96147 -10.71203 -10.55524 -10.47784 -10.38939 -9.96647 -8.59076 -7.80513 -5.25638 1.28240 1.50154 1.51634 1.57906 1.58029 2.14893 2.55238 2.87937 3.31723 3.49704 3.63382 3.66643 3.92439 3.96218 4.04085 4.05166 4.14276 4.20857 4.25229 4.35732 4.38750 4.48957 4.53149 4.56390 4.56580 4.58450 4.71828 4.74710 4.76047 4.79914 4.81752 4.87312 4.94536 5.00148 5.02476 5.05619 5.12536 5.14002 5.18375 5.26159 5.30649 5.33990 5.41749 5.48463 5.53467 5.59312 5.65448 5.72498 5.74810 5.79985 6.25508 6.44976 6.50091 7.17202 7.21489 7.91894 8.45189 9.24570 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011990 B = 0.003592 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.661491 B = 7793.020881 C = 9290.828096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.150 4.150 3 C -0.041 4.041 4 C -0.140 4.140 5 C -0.082 4.082 6 C 0.063 3.937 7 O -0.420 6.420 8 C 0.025 3.975 9 C 0.522 3.478 10 O -0.580 6.580 11 N -0.710 5.710 12 C 0.139 3.861 13 C -0.090 4.090 14 C -0.118 4.118 15 C -0.095 4.095 16 C -0.123 4.123 17 C 0.136 3.864 18 N -0.603 5.603 19 C -0.258 4.258 20 H 0.062 0.938 21 C -0.040 4.040 22 N -0.928 5.928 23 Si 0.955 3.045 24 H -0.284 1.284 25 H -0.295 1.295 26 H -0.275 1.275 27 C 0.199 3.801 28 H 0.123 0.877 29 H 0.094 0.906 30 H 0.148 0.852 31 H 0.055 0.945 32 H 0.096 0.904 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.050 0.950 39 H 0.094 0.906 40 H 0.053 0.947 41 H 0.407 0.593 42 H 0.046 0.954 43 H 0.073 0.927 44 H 0.062 0.938 45 H 0.056 0.944 46 H 0.041 0.959 47 H 0.078 0.922 48 H 0.049 0.951 49 H 0.078 0.922 50 H 0.065 0.935 51 H 0.005 0.995 52 H 0.051 0.949 53 H 0.249 0.751 54 H -0.022 1.022 55 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.321 -8.076 12.304 14.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.168 4.168 3 C -0.044 4.044 4 C -0.198 4.198 5 C -0.120 4.120 6 C -0.013 4.013 7 O -0.340 6.340 8 C -0.071 4.071 9 C 0.309 3.691 10 O -0.460 6.460 11 N -0.362 5.362 12 C 0.015 3.985 13 C -0.092 4.092 14 C -0.175 4.175 15 C -0.134 4.134 16 C -0.162 4.162 17 C 0.011 3.989 18 N -0.326 5.326 19 C -0.388 4.388 20 H 0.080 0.920 21 C -0.236 4.236 22 N -0.574 5.574 23 Si 0.784 3.216 24 H -0.210 1.210 25 H -0.221 1.221 26 H -0.201 1.201 27 C 0.073 3.927 28 H 0.141 0.859 29 H 0.112 0.888 30 H 0.165 0.835 31 H 0.074 0.926 32 H 0.115 0.885 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.113 0.887 40 H 0.071 0.929 41 H 0.245 0.755 42 H 0.064 0.936 43 H 0.091 0.909 44 H 0.081 0.919 45 H 0.075 0.925 46 H 0.060 0.940 47 H 0.096 0.904 48 H 0.068 0.932 49 H 0.097 0.903 50 H 0.084 0.916 51 H 0.023 0.977 52 H 0.070 0.930 53 H 0.058 0.942 54 H -0.004 1.004 55 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.442 -7.387 13.012 15.032 hybrid contribution 0.505 -0.660 -1.430 1.654 sum 1.947 -8.047 11.583 14.237 Atomic orbital electron populations 1.24466 0.96459 1.03517 0.99241 1.22832 0.95849 0.96641 1.01455 1.19845 0.94616 0.92007 0.97945 1.21914 0.99643 1.03555 0.94641 1.21125 0.96253 0.98837 0.95817 1.22675 0.92395 0.98219 0.87993 1.87835 1.50145 1.51602 1.44392 1.22934 0.91267 0.89988 1.02905 1.20777 0.80932 0.86216 0.81159 1.90649 1.72148 1.45732 1.37468 1.46274 1.35077 1.29995 1.24854 1.21306 0.90509 0.88756 0.97948 1.21331 0.96246 0.97381 0.94225 1.21640 0.99477 0.94870 1.01531 1.21379 0.96855 0.96451 0.98668 1.21917 0.97556 1.02109 0.94578 1.21097 0.90391 0.90486 0.96959 1.44212 1.37052 1.34191 1.17159 1.19378 0.92830 1.17416 1.09224 0.92035 1.25623 0.95101 1.02226 1.00655 1.70171 0.97263 1.40223 1.49711 0.85533 0.76158 0.80892 0.78997 1.21017 1.22070 1.20122 1.20527 0.90381 0.98196 0.83568 0.85860 0.88813 0.83452 0.92593 0.88510 0.92544 0.92129 0.91868 0.91242 0.91629 0.93131 0.88713 0.92870 0.75497 0.93569 0.90912 0.91873 0.92547 0.94008 0.90390 0.93231 0.90318 0.91629 0.97675 0.93049 0.94157 1.00356 0.91553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.48 13.17 67.78 0.89 -3.59 16 2 C -0.15 -3.20 8.00 25.65 0.21 -3.00 16 3 C -0.04 -1.06 0.62 -53.67 -0.03 -1.09 16 4 C -0.14 -3.50 8.00 71.98 0.58 -2.92 16 5 C -0.08 -2.11 3.92 30.60 0.12 -1.99 16 6 C 0.06 1.26 5.33 71.98 0.38 1.64 16 7 O -0.42 -9.48 10.70 -148.98 -1.59 -11.08 16 8 C 0.02 0.36 11.01 113.37 1.25 1.61 16 9 C 0.52 17.12 5.34 87.66 0.47 17.58 16 10 O -0.58 -22.77 15.98 -3.03 -0.05 -22.81 16 11 N -0.71 -22.93 3.16 -463.05 -1.46 -24.40 16 12 C 0.14 4.57 4.57 86.38 0.39 4.97 16 13 C -0.09 -3.06 0.53 -52.11 -0.03 -3.08 16 14 C -0.12 -3.73 7.82 71.98 0.56 -3.17 16 15 C -0.10 -2.90 4.71 30.62 0.14 -2.76 16 16 C -0.12 -3.80 5.74 30.67 0.18 -3.62 16 17 C 0.14 5.44 6.52 86.36 0.56 6.00 16 18 N -0.60 -28.50 2.43 -699.10 -1.70 -30.20 16 19 C -0.26 -13.41 9.58 84.04 0.81 -12.60 16 20 H 0.06 3.16 7.88 -2.91 -0.02 3.14 16 21 C -0.04 -2.10 4.92 84.87 0.42 -1.69 16 22 N -0.93 -51.43 11.20 21.65 0.24 -51.19 16 23 Si 0.96 42.38 29.59 68.60 2.03 44.41 16 24 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 25 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 26 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 27 C 0.20 8.90 3.72 86.36 0.32 9.22 16 28 H 0.12 2.22 8.06 -2.91 -0.02 2.20 16 29 H 0.09 2.46 5.18 -2.91 -0.02 2.45 16 30 H 0.15 2.31 7.00 -2.91 -0.02 2.28 16 31 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.10 1.82 6.43 -2.39 -0.02 1.81 16 33 H 0.06 1.60 7.57 -2.39 -0.02 1.58 16 34 H 0.06 1.77 8.10 -2.39 -0.02 1.75 16 35 H 0.06 1.79 8.10 -2.39 -0.02 1.77 16 36 H 0.07 1.12 6.62 -2.39 -0.02 1.11 16 37 H 0.07 1.14 6.43 -2.38 -0.02 1.13 16 38 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 41 H 0.41 13.37 4.98 -92.71 -0.46 12.91 16 42 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 44 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.06 1.98 5.97 -2.39 -0.01 1.97 16 46 H 0.04 1.34 6.87 -2.39 -0.02 1.32 16 47 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 48 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 49 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 50 H 0.07 2.02 6.34 -2.39 -0.02 2.01 16 51 H 0.01 0.22 8.14 -2.39 -0.02 0.20 16 52 H 0.05 2.02 7.93 -2.39 -0.02 2.00 16 53 H 0.25 13.49 8.31 -92.71 -0.77 12.72 16 54 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 55 H 0.07 3.24 4.96 -2.38 -0.01 3.23 16 Total: -1.00 -64.92 412.29 5.07 -59.84 By element: Atomic # 1 Polarization: 33.53 SS G_CDS: 0.39 Total: 33.92 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: 7.22 Total: 1.52 kcal Atomic # 7 Polarization: -102.87 SS G_CDS: -2.92 Total: -105.79 kcal Atomic # 8 Polarization: -32.25 SS G_CDS: -1.64 Total: -33.89 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -64.92 5.07 -59.84 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270983940.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.947 kcal (2) G-P(sol) polarization free energy of solvation -64.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds