Wall clock time and date at job start Tue Mar 31 2020 21:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50702 * 119.99727 * 2 1 4 4 C 1.52999 * 109.46993 * 244.86179 * 3 2 1 5 5 C 1.53004 * 109.47222 * 4.85791 * 3 2 1 6 6 C 1.53000 * 109.46995 * 186.07757 * 5 3 2 7 7 O 1.42901 * 109.46751 * 175.41419 * 6 5 3 8 8 C 1.42905 * 113.99786 * 179.97438 * 7 6 5 9 9 C 1.50701 * 109.47252 * 124.85905 * 3 2 1 10 10 O 1.21281 * 119.99982 * 239.99874 * 9 3 2 11 11 N 1.34776 * 120.00049 * 59.99963 * 9 3 2 12 12 C 1.46491 * 120.00070 * 179.97438 * 11 9 3 13 13 C 1.52996 * 109.47522 * 180.02562 * 12 11 9 14 14 C 1.53006 * 109.49505 * 300.00088 * 13 12 11 15 15 C 1.53040 * 109.50316 * 179.97438 * 13 12 11 16 16 C 1.53046 * 109.53997 * 178.71625 * 15 13 12 17 17 C 1.53185 * 109.34025 * 61.31426 * 16 15 13 18 18 N 1.46931 * 108.77699 * 305.38343 * 17 16 15 19 19 C 1.36942 * 120.62690 * 233.63007 * 18 17 16 20 20 H 1.08000 * 119.99738 * 34.14577 * 19 18 17 21 21 C 1.38812 * 119.99698 * 214.14004 * 19 18 17 22 22 N 1.31613 * 120.00341 * 6.35048 * 21 19 18 23 23 Si 1.86799 * 119.99848 * 186.35271 * 21 19 18 24 24 H 1.48496 * 109.47249 * 59.99728 * 23 21 19 25 25 H 1.48494 * 109.47213 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.47079 * 300.00061 * 23 21 19 27 27 C 1.46920 * 118.73771 * 53.60540 * 18 17 16 28 28 H 1.07998 * 119.99768 * 174.78949 * 1 2 3 29 29 H 1.08002 * 120.00185 * 354.78338 * 1 2 3 30 30 H 1.07998 * 120.00210 * 179.97438 * 2 1 3 31 31 H 1.09003 * 109.47523 * 179.97438 * 4 3 2 32 32 H 1.09004 * 109.46775 * 299.99927 * 4 3 2 33 33 H 1.08996 * 109.47509 * 59.99526 * 4 3 2 34 34 H 1.09001 * 109.46960 * 66.07759 * 5 3 2 35 35 H 1.09000 * 109.47062 * 306.07719 * 5 3 2 36 36 H 1.08998 * 109.47447 * 55.41782 * 6 5 3 37 37 H 1.09002 * 109.47120 * 295.41464 * 6 5 3 38 38 H 1.08998 * 109.46907 * 180.02562 * 8 7 6 39 39 H 1.08995 * 109.47186 * 300.00421 * 8 7 6 40 40 H 1.09003 * 109.46892 * 60.00067 * 8 7 6 41 41 H 0.97005 * 119.99769 * 359.97438 * 11 9 3 42 42 H 1.09004 * 109.47253 * 300.00165 * 12 11 9 43 43 H 1.09000 * 109.47126 * 59.99965 * 12 11 9 44 44 H 1.08998 * 109.46974 * 59.99868 * 14 13 12 45 45 H 1.09003 * 109.47203 * 179.97438 * 14 13 12 46 46 H 1.08991 * 109.47191 * 299.99832 * 14 13 12 47 47 H 1.08997 * 109.45599 * 298.69901 * 15 13 12 48 48 H 1.08994 * 109.46154 * 58.65973 * 15 13 12 49 49 H 1.08998 * 109.46468 * 301.36208 * 16 15 13 50 50 H 1.09000 * 109.49623 * 181.28481 * 16 15 13 51 51 H 1.08992 * 109.58771 * 185.59284 * 17 16 15 52 52 H 1.09003 * 109.70576 * 65.23845 * 17 16 15 53 53 H 0.97001 * 120.00567 * 179.97438 * 22 21 19 54 54 H 1.09007 * 109.58370 * 186.60728 * 27 18 17 55 55 H 1.09002 * 109.70514 * 66.25408 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.8491 1.4404 -1.3059 5 6 1.0736 2.4655 0.1222 6 6 1.8213 3.7917 -0.0298 7 8 0.8839 4.8704 -0.0226 8 6 1.4821 6.1610 -0.1590 9 6 3.0179 1.3342 1.1659 10 8 2.9164 2.1979 2.0112 11 7 3.9842 0.4004 1.2691 12 6 4.9124 0.4290 2.4021 13 6 5.9025 -0.7309 2.2797 14 6 5.1386 -2.0566 2.2800 15 6 6.8729 -0.7013 3.4628 16 6 7.8436 -1.8799 3.3583 17 6 8.6540 -1.7565 2.0642 18 7 7.7237 -1.6388 0.9330 19 6 7.8171 -2.4867 -0.1383 20 1 8.1258 -3.5111 0.0092 21 6 7.5150 -2.0295 -1.4137 22 7 7.2605 -0.7536 -1.6123 23 14 7.4697 -3.2252 -2.8481 24 1 6.4463 -4.2698 -2.5896 25 1 7.1260 -2.4922 -4.0929 26 1 8.8013 -3.8643 -3.0021 27 6 6.6910 -0.5945 0.9734 28 1 -0.5400 -0.9314 -0.0849 29 1 -0.5400 0.9314 0.0850 30 1 1.8500 -0.9353 0.0004 31 1 3.3937 2.3846 -1.3062 32 1 3.5542 0.6138 -1.3929 33 1 2.1588 1.4194 -2.1491 34 1 0.5912 2.4302 1.0990 35 1 0.3183 2.3826 -0.6593 36 1 2.3701 3.7936 -0.9715 37 1 2.5199 3.9119 0.7982 38 1 0.7049 6.9250 -0.1439 39 1 2.1734 6.3301 0.6665 40 1 2.0242 6.2123 -1.1032 41 1 4.0651 -0.2906 0.5931 42 1 5.4574 1.3730 2.4016 43 1 4.3529 0.3330 3.3326 44 1 4.4481 -2.0781 1.4370 45 1 5.8443 -2.8827 2.1924 46 1 4.5792 -2.1534 3.2104 47 1 7.4341 0.2330 3.4487 48 1 6.3120 -0.7737 4.3945 49 1 7.2815 -2.8136 3.3479 50 1 8.5198 -1.8712 4.2132 51 1 9.2749 -2.6430 1.9359 52 1 9.2872 -0.8704 2.1101 53 1 7.0497 -0.4340 -2.5036 54 1 6.0166 -0.7146 0.1254 55 1 7.1603 0.3883 0.9308 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270983941.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:37 Heat of formation + Delta-G solvation = -71.069228 kcal Electronic energy + Delta-G solvation = -32017.153919 eV Core-core repulsion = 28054.254441 eV Total energy + Delta-G solvation = -3962.899479 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.61316 -40.10845 -38.79008 -37.33432 -36.30194 -34.87934 -32.95909 -32.40827 -31.62602 -30.14552 -27.99472 -27.38785 -27.24364 -26.98162 -25.48975 -23.93115 -23.39718 -22.17747 -21.74131 -20.04083 -19.26907 -18.48607 -17.97878 -17.61986 -17.00768 -16.98357 -16.76620 -16.36803 -15.91832 -15.74915 -15.39002 -15.20906 -15.12919 -15.01700 -14.77425 -14.67814 -14.34833 -14.03013 -13.81332 -13.72290 -13.33778 -13.13290 -13.11008 -12.98224 -12.72052 -12.63089 -12.60056 -12.55718 -12.27119 -12.17383 -12.13451 -11.90185 -11.86611 -11.70387 -11.64781 -11.38091 -11.20931 -10.97107 -10.92291 -10.57402 -10.49460 -10.15733 -9.97955 -8.49367 -7.80509 -5.34238 1.23564 1.49742 1.51160 1.56955 1.68647 2.30771 2.53530 2.74676 3.33964 3.59535 3.62828 3.74352 3.86935 3.97495 4.04942 4.06524 4.09187 4.21379 4.31453 4.37670 4.41334 4.49233 4.52527 4.53927 4.56390 4.57996 4.72783 4.75787 4.77233 4.78305 4.80906 4.82630 4.99765 5.01106 5.03467 5.05605 5.11317 5.12934 5.18871 5.25235 5.32083 5.36191 5.42496 5.49535 5.55716 5.66308 5.66835 5.74366 5.77722 5.82644 6.18845 6.48983 6.55166 7.22485 7.23643 7.91059 8.46659 9.23707 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010971 B = 0.003617 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2551.617527 B = 7738.305062 C = 8738.441575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.165 4.165 3 C -0.039 4.039 4 C -0.139 4.139 5 C -0.086 4.086 6 C 0.054 3.946 7 O -0.411 6.411 8 C 0.026 3.974 9 C 0.520 3.480 10 O -0.576 6.576 11 N -0.710 5.710 12 C 0.142 3.858 13 C -0.092 4.092 14 C -0.117 4.117 15 C -0.095 4.095 16 C -0.123 4.123 17 C 0.136 3.864 18 N -0.604 5.604 19 C -0.260 4.260 20 H 0.060 0.940 21 C -0.035 4.035 22 N -0.928 5.928 23 Si 0.958 3.042 24 H -0.275 1.275 25 H -0.295 1.295 26 H -0.284 1.284 27 C 0.202 3.798 28 H 0.120 0.880 29 H 0.111 0.889 30 H 0.118 0.882 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.089 0.911 34 H 0.067 0.933 35 H 0.097 0.903 36 H 0.057 0.943 37 H 0.045 0.955 38 H 0.104 0.896 39 H 0.037 0.963 40 H 0.049 0.951 41 H 0.406 0.594 42 H 0.046 0.954 43 H 0.070 0.930 44 H 0.040 0.960 45 H 0.054 0.946 46 H 0.060 0.940 47 H 0.049 0.951 48 H 0.076 0.924 49 H 0.064 0.936 50 H 0.078 0.922 51 H 0.050 0.950 52 H 0.005 0.995 53 H 0.250 0.750 54 H 0.067 0.933 55 H -0.021 1.021 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.993 3.762 4.417 13.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.183 4.183 3 C -0.043 4.043 4 C -0.197 4.197 5 C -0.124 4.124 6 C -0.022 4.022 7 O -0.330 6.330 8 C -0.070 4.070 9 C 0.308 3.692 10 O -0.456 6.456 11 N -0.361 5.361 12 C 0.018 3.982 13 C -0.094 4.094 14 C -0.174 4.174 15 C -0.133 4.133 16 C -0.162 4.162 17 C 0.011 3.989 18 N -0.327 5.327 19 C -0.391 4.391 20 H 0.077 0.923 21 C -0.232 4.232 22 N -0.574 5.574 23 Si 0.787 3.213 24 H -0.201 1.201 25 H -0.221 1.221 26 H -0.210 1.210 27 C 0.076 3.924 28 H 0.138 0.862 29 H 0.129 0.871 30 H 0.135 0.865 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.108 0.892 34 H 0.086 0.914 35 H 0.116 0.884 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.122 0.878 39 H 0.056 0.944 40 H 0.067 0.933 41 H 0.243 0.757 42 H 0.064 0.936 43 H 0.088 0.912 44 H 0.059 0.941 45 H 0.073 0.927 46 H 0.079 0.921 47 H 0.068 0.932 48 H 0.095 0.905 49 H 0.082 0.918 50 H 0.096 0.904 51 H 0.069 0.931 52 H 0.023 0.977 53 H 0.059 0.941 54 H 0.085 0.915 55 H -0.003 1.003 Dipole moment (debyes) X Y Z Total from point charges -12.246 4.399 4.884 13.898 hybrid contribution 0.968 -0.501 -1.309 1.703 sum -11.278 3.898 3.574 12.457 Atomic orbital electron populations 1.24241 0.95303 1.03653 0.97230 1.22662 0.96635 0.95658 1.03340 1.19797 0.94573 0.96026 0.93868 1.21903 1.00154 1.02436 0.95166 1.21331 0.97274 0.90352 1.03425 1.22787 0.91954 0.87011 1.00449 1.87763 1.34866 1.15524 1.94876 1.22906 0.99684 0.84204 1.00240 1.20843 0.81115 0.80392 0.86894 1.90623 1.73696 1.37696 1.43616 1.46079 1.31450 1.31178 1.27394 1.21260 0.90215 0.97905 0.88828 1.21367 0.95077 0.94636 0.98329 1.21616 0.98944 0.96366 1.00459 1.21370 0.96695 0.98377 0.96853 1.21916 0.98343 0.98478 0.97435 1.21096 0.91778 0.97836 0.88190 1.44134 1.32699 1.37390 1.18481 1.19341 1.42103 0.91728 0.85899 0.92271 1.25813 1.01279 0.96716 0.99349 1.70092 1.52370 1.13740 1.21177 0.85502 0.78006 0.78645 0.79179 1.20091 1.22074 1.20980 1.20505 0.89763 0.88214 0.93870 0.86199 0.87052 0.86450 0.92257 0.92306 0.89230 0.91424 0.88434 0.92543 0.93713 0.87763 0.94395 0.93264 0.75722 0.93558 0.91193 0.94072 0.92651 0.92081 0.93228 0.90538 0.91756 0.90386 0.93126 0.97659 0.94101 0.91514 1.00336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.03 13.71 67.78 0.93 -2.10 16 2 C -0.16 -3.63 8.54 25.65 0.22 -3.41 16 3 C -0.04 -1.01 0.62 -53.67 -0.03 -1.04 16 4 C -0.14 -3.50 7.84 71.98 0.56 -2.94 16 5 C -0.09 -2.14 3.00 30.60 0.09 -2.05 16 6 C 0.05 1.47 5.27 71.98 0.38 1.85 16 7 O -0.41 -10.98 10.70 -148.98 -1.59 -12.57 16 8 C 0.03 0.52 11.01 113.37 1.25 1.77 16 9 C 0.52 16.59 6.21 87.66 0.54 17.14 16 10 O -0.58 -21.59 14.03 -3.03 -0.04 -21.63 16 11 N -0.71 -22.63 4.79 -463.08 -2.22 -24.85 16 12 C 0.14 4.64 4.57 86.38 0.39 5.04 16 13 C -0.09 -3.13 0.53 -52.10 -0.03 -3.15 16 14 C -0.12 -3.71 7.81 71.98 0.56 -3.14 16 15 C -0.09 -2.89 4.71 30.62 0.14 -2.75 16 16 C -0.12 -3.82 5.74 30.67 0.18 -3.64 16 17 C 0.14 5.46 6.52 86.36 0.56 6.02 16 18 N -0.60 -28.47 2.42 -699.11 -1.69 -30.16 16 19 C -0.26 -13.47 9.56 84.03 0.80 -12.67 16 20 H 0.06 3.03 7.84 -2.91 -0.02 3.01 16 21 C -0.04 -1.85 5.13 84.86 0.44 -1.42 16 22 N -0.93 -51.09 11.02 21.65 0.24 -50.85 16 23 Si 0.96 42.45 29.56 68.60 2.03 44.48 16 24 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 25 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 26 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 27 C 0.20 8.98 3.65 86.36 0.32 9.30 16 28 H 0.12 1.73 8.06 -2.91 -0.02 1.70 16 29 H 0.11 1.90 5.70 -2.91 -0.02 1.89 16 30 H 0.12 2.57 7.99 -2.91 -0.02 2.54 16 31 H 0.06 1.56 6.23 -2.39 -0.01 1.54 16 32 H 0.06 1.65 7.57 -2.38 -0.02 1.63 16 33 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.07 1.84 7.74 -2.39 -0.02 1.82 16 35 H 0.10 2.02 6.96 -2.39 -0.02 2.01 16 36 H 0.06 1.42 6.06 -2.39 -0.01 1.41 16 37 H 0.04 1.45 6.14 -2.39 -0.01 1.43 16 38 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.41 13.02 5.46 -92.70 -0.51 12.51 16 42 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 43 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 44 H 0.04 1.31 6.86 -2.39 -0.02 1.30 16 45 H 0.05 1.95 5.97 -2.39 -0.01 1.94 16 46 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 47 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 48 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 49 H 0.06 2.00 6.33 -2.39 -0.02 1.98 16 50 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 51 H 0.05 1.99 7.93 -2.39 -0.02 1.97 16 52 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 53 H 0.25 13.44 8.31 -92.71 -0.77 12.67 16 54 H 0.07 3.24 5.09 -2.38 -0.01 3.23 16 55 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 Total: -1.00 -62.87 412.21 4.38 -58.49 By element: Atomic # 1 Polarization: 33.94 SS G_CDS: 0.35 Total: 34.29 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: 7.31 Total: 2.81 kcal Atomic # 7 Polarization: -102.20 SS G_CDS: -3.67 Total: -105.87 kcal Atomic # 8 Polarization: -32.57 SS G_CDS: -1.64 Total: -34.20 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -62.87 4.38 -58.49 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270983941.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.576 kcal (2) G-P(sol) polarization free energy of solvation -62.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds