Wall clock time and date at job start Tue Mar 31 2020 22:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 110.45584 * 2 1 4 4 C 1.54474 * 110.51255 * 237.24540 * 2 1 3 5 5 O 1.44426 * 104.80394 * 265.33561 * 4 2 1 6 6 C 1.44425 * 105.27405 * 319.48507 * 5 4 2 7 7 H 1.08999 * 110.46656 * 281.63800 * 6 5 4 8 8 C 1.53001 * 110.36757 * 159.34451 * 6 5 4 9 9 C 1.50697 * 109.47252 * 69.62612 * 8 6 5 10 10 O 1.21286 * 120.00106 * 359.97438 * 9 8 6 11 11 N 1.34780 * 120.00113 * 179.97438 * 9 8 6 12 12 C 1.46917 * 120.62833 * 5.37452 * 11 9 8 13 13 C 1.53193 * 108.77621 * 233.60863 * 12 11 9 14 14 C 1.53035 * 109.31410 * 305.36815 * 13 12 11 15 15 C 1.53045 * 109.53864 * 61.36382 * 14 13 12 16 16 C 1.46918 * 120.62965 * 185.37522 * 11 9 8 17 17 H 1.08996 * 109.70621 * 246.24617 * 16 11 9 18 18 C 1.53005 * 109.59125 * 6.60300 * 16 11 9 19 19 C 1.52999 * 109.47293 * 177.87949 * 18 16 11 20 20 N 1.46501 * 109.46863 * 174.92477 * 19 18 16 21 21 C 1.36934 * 120.00079 * 179.97438 * 20 19 18 22 22 H 1.08004 * 119.99815 * 359.72487 * 21 20 19 23 23 C 1.38814 * 120.00560 * 179.97438 * 21 20 19 24 24 N 1.31613 * 120.00169 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 119.99428 * 0.02562 * 23 21 20 26 26 H 1.48504 * 109.47235 * 90.00001 * 25 23 21 27 27 H 1.48505 * 109.47065 * 209.99752 * 25 23 21 28 28 H 1.48494 * 109.47320 * 329.99950 * 25 23 21 29 29 C 1.54475 * 104.80138 * 40.51476 * 6 5 4 30 30 H 1.09003 * 109.47211 * 297.39294 * 1 2 3 31 31 H 1.09000 * 109.47506 * 57.40056 * 1 2 3 32 32 H 1.09007 * 109.46897 * 177.39442 * 1 2 3 33 33 H 1.08996 * 109.46950 * 182.60430 * 3 2 1 34 34 H 1.09001 * 109.47286 * 302.60662 * 3 2 1 35 35 H 1.09004 * 109.47348 * 62.60091 * 3 2 1 36 36 H 1.09008 * 110.37286 * 24.16203 * 4 2 1 37 37 H 1.08996 * 110.37257 * 146.49911 * 4 2 1 38 38 H 1.08996 * 109.47595 * 309.61841 * 8 6 5 39 39 H 1.09006 * 109.46270 * 189.61793 * 8 6 5 40 40 H 1.08999 * 109.58991 * 113.82681 * 12 11 9 41 41 H 1.09001 * 109.59411 * 353.39459 * 12 11 9 42 42 H 1.09001 * 109.50056 * 185.41028 * 13 12 11 43 43 H 1.09005 * 109.49389 * 65.31879 * 13 12 11 44 44 H 1.09000 * 109.46140 * 301.34404 * 14 13 12 45 45 H 1.08997 * 109.46389 * 181.38472 * 14 13 12 46 46 H 1.08996 * 109.49752 * 178.68852 * 15 14 13 47 47 H 1.08994 * 109.50158 * 58.58573 * 15 14 13 48 48 H 1.08997 * 109.46766 * 57.87758 * 18 16 11 49 49 H 1.09003 * 109.46822 * 297.88052 * 18 16 11 50 50 H 1.08995 * 109.46959 * 54.92342 * 19 18 16 51 51 H 1.09005 * 109.47020 * 294.92107 * 19 18 16 52 52 H 0.96994 * 120.00175 * 359.97438 * 20 19 18 53 53 H 0.97002 * 119.99708 * 180.02562 * 24 23 21 54 54 H 1.09000 * 110.51073 * 94.66582 * 29 6 5 55 55 H 1.09000 * 110.51308 * 217.37138 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0647 1.4335 0.0000 4 6 2.0713 -0.7828 -1.2168 5 8 2.3070 -2.1187 -0.7210 6 6 2.8757 -1.9414 0.5947 7 1 3.9305 -1.6763 0.5214 8 6 2.7041 -3.2150 1.4250 9 6 3.5913 -4.2996 0.8705 10 8 4.2916 -4.0761 -0.0942 11 7 3.6066 -5.5180 1.4466 12 6 2.6801 -5.8405 2.5402 13 6 3.4876 -6.3637 3.7323 14 6 4.3571 -7.5383 3.2782 15 6 5.3366 -7.0640 2.2022 16 6 4.5500 -6.5487 0.9927 17 1 4.0022 -7.3725 0.5352 18 6 5.5165 -5.9457 -0.0286 19 6 6.5306 -7.0071 -0.4598 20 7 7.3792 -6.4675 -1.5250 21 6 8.3670 -7.2421 -2.0722 22 1 8.5233 -8.2494 -1.7153 23 6 9.1708 -6.7310 -3.0819 24 7 10.1199 -7.4758 -3.6081 25 14 8.9054 -4.9862 -3.6938 26 1 9.7386 -4.0500 -2.8970 27 1 9.2936 -4.8990 -5.1246 28 1 7.4733 -4.6223 -3.5464 29 6 2.0714 -0.7798 1.2191 30 1 -0.3634 0.4728 0.9125 31 1 -0.3634 0.5537 -0.8657 32 1 -0.3633 -1.0267 -0.0467 33 1 3.1535 1.4151 -0.0467 34 1 1.6729 1.9675 -0.8657 35 1 1.7486 1.9392 0.9124 36 1 1.3310 -0.8001 -2.0167 37 1 3.0023 -0.3392 -1.5697 38 1 1.6643 -3.5390 1.3827 39 1 2.9802 -3.0136 2.4601 40 1 1.9778 -6.6060 2.2105 41 1 2.1348 -4.9435 2.8339 42 1 2.8062 -6.6968 4.5152 43 1 4.1243 -5.5675 4.1180 44 1 3.7216 -8.3241 2.8698 45 1 4.9143 -7.9283 4.1299 46 1 5.9712 -7.8956 1.8959 47 1 5.9559 -6.2613 2.6022 48 1 6.0416 -5.1032 0.4215 49 1 4.9575 -5.6023 -0.8991 50 1 6.0019 -7.8867 -0.8268 51 1 7.1503 -7.2851 0.3928 52 1 7.2415 -5.5615 -1.8428 53 1 10.6818 -7.1184 -4.3134 54 1 1.2491 -1.1653 1.8218 55 1 2.7219 -0.1447 1.8205 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271551237.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:00 Heat of formation + Delta-G solvation = -95.932912 kcal Electronic energy + Delta-G solvation = -31145.473456 eV Core-core repulsion = 27181.495807 eV Total energy + Delta-G solvation = -3963.977649 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -41.71204 -40.69191 -38.40442 -37.17032 -35.51507 -34.78676 -33.86626 -33.19825 -32.52738 -29.52320 -28.55627 -28.20406 -26.84837 -26.12581 -25.26294 -23.99214 -22.75507 -22.13290 -21.55505 -20.45021 -19.78400 -19.70276 -17.93864 -17.30853 -16.93595 -16.68705 -16.53284 -16.27908 -16.05875 -15.76500 -15.45587 -15.28687 -14.88946 -14.85819 -14.76846 -14.61113 -14.32184 -14.21028 -14.06320 -13.86004 -13.71187 -13.46846 -13.10013 -12.92014 -12.85626 -12.75456 -12.67344 -12.43612 -12.29688 -12.22695 -12.15299 -11.90634 -11.89656 -11.82867 -11.65743 -11.57827 -11.56262 -11.45751 -11.38370 -11.01857 -10.60905 -9.96035 -9.49707 -9.34262 -8.09239 -5.41479 1.31640 1.32934 1.42738 1.73859 2.01622 2.42032 2.96304 3.21781 3.38775 3.47550 3.66449 3.80737 3.87203 3.89419 3.90562 3.98319 4.04549 4.13822 4.20478 4.26060 4.36231 4.38907 4.42037 4.46748 4.53624 4.56506 4.63355 4.69465 4.72163 4.74535 4.78966 4.79990 4.81785 4.86504 4.91784 4.99534 5.00788 5.05172 5.12685 5.13559 5.17554 5.23910 5.24839 5.31100 5.34936 5.41454 5.42425 5.50647 5.68480 5.73404 5.95423 6.16341 6.53944 7.01022 7.33761 7.79162 7.98507 9.12420 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.008586 B = 0.003477 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3260.424198 B = 8050.138931 C =10950.455294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.096 4.096 3 C -0.137 4.137 4 C 0.042 3.958 5 O -0.390 6.390 6 C 0.084 3.916 7 H 0.046 0.954 8 C -0.125 4.125 9 C 0.498 3.502 10 O -0.567 6.567 11 N -0.611 5.611 12 C 0.101 3.899 13 C -0.129 4.129 14 C -0.117 4.117 15 C -0.129 4.129 16 C 0.156 3.844 17 H 0.073 0.927 18 C -0.096 4.096 19 C 0.150 3.850 20 N -0.762 5.762 21 C -0.236 4.236 22 H 0.062 0.938 23 C -0.059 4.059 24 N -0.980 5.980 25 Si 0.951 3.049 26 H -0.276 1.276 27 H -0.286 1.286 28 H -0.269 1.269 29 C -0.133 4.133 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.046 0.954 38 H 0.121 0.879 39 H 0.138 0.862 40 H 0.079 0.921 41 H 0.113 0.887 42 H 0.103 0.897 43 H 0.064 0.936 44 H 0.070 0.930 45 H 0.075 0.925 46 H 0.069 0.931 47 H 0.055 0.945 48 H 0.048 0.952 49 H 0.065 0.935 50 H 0.021 0.979 51 H 0.030 0.970 52 H 0.361 0.639 53 H 0.260 0.740 54 H 0.099 0.901 55 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.402 15.090 21.370 37.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.097 4.097 3 C -0.194 4.194 4 C -0.035 4.035 5 O -0.310 6.310 6 C 0.025 3.975 7 H 0.064 0.936 8 C -0.164 4.164 9 C 0.288 3.712 10 O -0.446 6.446 11 N -0.345 5.345 12 C -0.021 4.021 13 C -0.167 4.167 14 C -0.155 4.155 15 C -0.168 4.168 16 C 0.053 3.947 17 H 0.091 0.909 18 C -0.135 4.135 19 C 0.024 3.976 20 N -0.407 5.407 21 C -0.366 4.366 22 H 0.080 0.920 23 C -0.251 4.251 24 N -0.630 5.630 25 Si 0.779 3.221 26 H -0.202 1.202 27 H -0.212 1.212 28 H -0.194 1.194 29 C -0.170 4.170 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.110 0.890 37 H 0.064 0.936 38 H 0.139 0.861 39 H 0.156 0.844 40 H 0.097 0.903 41 H 0.131 0.869 42 H 0.121 0.879 43 H 0.083 0.917 44 H 0.089 0.911 45 H 0.093 0.907 46 H 0.087 0.913 47 H 0.074 0.926 48 H 0.067 0.933 49 H 0.083 0.917 50 H 0.039 0.961 51 H 0.048 0.952 52 H 0.194 0.806 53 H 0.069 0.931 54 H 0.118 0.882 55 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -26.977 14.804 20.753 37.116 hybrid contribution 0.891 0.727 -1.184 1.650 sum -26.086 15.531 19.569 36.120 Atomic orbital electron populations 1.21812 0.92246 1.02011 1.02807 1.21942 0.97494 0.96152 0.94067 1.21841 1.00493 0.94050 1.03049 1.23679 0.99682 0.82680 0.97415 1.89199 1.82801 1.26860 1.32114 1.22784 0.96778 0.94883 0.83005 0.93581 1.21892 1.01461 0.91712 1.01359 1.21342 0.83014 0.83876 0.82967 1.90824 1.44067 1.81697 1.28051 1.48302 1.37283 1.11941 1.36944 1.22094 0.91237 1.02979 0.85747 1.21921 0.99286 0.97996 0.97527 1.21531 0.97637 0.98435 0.97866 1.21998 0.98378 1.00912 0.95472 1.21057 0.89577 0.89888 0.94224 0.90949 1.21974 0.95986 0.96042 0.99452 1.20977 0.91504 0.95502 0.89665 1.42826 1.39121 1.14553 1.44224 1.19105 1.07050 0.96728 1.13757 0.92016 1.25410 0.98087 1.02090 0.99478 1.69857 1.23988 1.38288 1.30914 0.85466 0.78165 0.80942 0.77575 1.20214 1.21200 1.19415 1.23137 1.00590 0.95702 0.97618 0.90822 0.92182 0.92809 0.93209 0.91968 0.90688 0.88957 0.93589 0.86105 0.84379 0.90251 0.86923 0.87857 0.91740 0.91115 0.90667 0.91264 0.92609 0.93331 0.91692 0.96122 0.95235 0.80612 0.93125 0.88200 0.89071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.37 8.29 71.98 0.60 -0.78 16 2 C -0.10 -1.30 1.05 -51.17 -0.05 -1.35 16 3 C -0.14 -1.54 8.31 71.98 0.60 -0.94 16 4 C 0.04 0.88 6.74 72.48 0.49 1.37 16 5 O -0.39 -10.68 10.92 -142.69 -1.56 -12.24 16 6 C 0.08 1.73 2.74 31.10 0.09 1.82 16 7 H 0.05 1.21 7.91 -2.39 -0.02 1.19 16 8 C -0.12 -2.04 3.68 29.85 0.11 -1.93 16 9 C 0.50 13.32 7.46 87.66 0.65 13.98 16 10 O -0.57 -21.77 11.16 3.24 0.04 -21.73 16 11 N -0.61 -13.66 2.97 -795.04 -2.36 -16.02 16 12 C 0.10 1.17 6.35 86.36 0.55 1.72 16 13 C -0.13 -1.33 6.08 30.67 0.19 -1.14 16 14 C -0.12 -1.75 5.88 30.62 0.18 -1.57 16 15 C -0.13 -3.03 4.81 30.68 0.15 -2.88 16 16 C 0.16 4.35 3.04 44.98 0.14 4.49 16 17 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 18 C -0.10 -3.72 3.29 30.60 0.10 -3.62 16 19 C 0.15 6.68 5.72 86.38 0.49 7.18 16 20 N -0.76 -41.83 5.41 -343.45 -1.86 -43.68 16 21 C -0.24 -14.85 10.47 84.03 0.88 -13.97 16 22 H 0.06 4.14 8.06 -2.91 -0.02 4.12 16 23 C -0.06 -3.77 5.50 84.86 0.47 -3.30 16 24 N -0.98 -66.30 13.97 21.65 0.30 -66.00 16 25 Si 0.95 50.89 27.74 68.60 1.90 52.79 16 26 H -0.28 -14.31 7.11 99.48 0.71 -13.60 16 27 H -0.29 -14.95 7.11 99.48 0.71 -14.24 16 28 H -0.27 -14.02 6.52 99.48 0.65 -13.37 16 29 C -0.13 -1.64 5.92 31.61 0.19 -1.46 16 30 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 33 H 0.05 0.65 8.09 -2.39 -0.02 0.63 16 34 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.09 1.76 7.87 -2.38 -0.02 1.74 16 37 H 0.05 1.04 7.83 -2.39 -0.02 1.02 16 38 H 0.12 1.44 7.72 -2.39 -0.02 1.43 16 39 H 0.14 1.24 7.91 -2.38 -0.02 1.22 16 40 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.11 0.65 5.93 -2.39 -0.01 0.64 16 42 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 44 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.07 1.00 8.14 -2.39 -0.02 0.99 16 46 H 0.07 1.78 6.86 -2.39 -0.02 1.77 16 47 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 48 H 0.05 2.02 7.21 -2.39 -0.02 2.00 16 49 H 0.06 2.90 6.27 -2.39 -0.01 2.89 16 50 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 51 H 0.03 1.29 6.83 -2.38 -0.02 1.27 16 52 H 0.36 19.85 5.53 -92.71 -0.51 19.34 16 53 H 0.26 16.63 8.31 -92.71 -0.77 15.86 16 54 H 0.10 0.81 7.46 -2.39 -0.02 0.79 16 55 H 0.09 0.91 7.73 -2.39 -0.02 0.90 16 Total: -1.00 -85.06 411.61 2.54 -82.51 By element: Atomic # 1 Polarization: 26.48 SS G_CDS: 0.27 Total: 26.76 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: 5.81 Total: -2.38 kcal Atomic # 7 Polarization: -121.79 SS G_CDS: -3.92 Total: -125.71 kcal Atomic # 8 Polarization: -32.45 SS G_CDS: -1.52 Total: -33.97 kcal Atomic # 14 Polarization: 50.89 SS G_CDS: 1.90 Total: 52.79 kcal Total: -85.06 2.54 -82.51 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271551237.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.418 kcal (2) G-P(sol) polarization free energy of solvation -85.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds