Wall clock time and date at job start Tue Mar 31 2020 22:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 110.43729 * 2 1 4 4 C 1.54092 * 110.48784 * 122.54940 * 2 1 3 5 5 O 1.43745 * 107.42228 * 120.62983 * 4 2 1 6 6 C 1.44571 * 106.86916 * 333.66763 * 5 4 2 7 7 H 1.08994 * 110.51037 * 281.37932 * 6 5 4 8 8 C 1.53001 * 110.77376 * 158.50855 * 6 5 4 9 9 C 1.50705 * 109.47042 * 70.72189 * 8 6 5 10 10 O 1.21277 * 120.00112 * 0.02562 * 9 8 6 11 11 N 1.34774 * 119.99973 * 179.97438 * 9 8 6 12 12 C 1.46933 * 120.63103 * 354.46901 * 11 9 8 13 13 C 1.53189 * 108.77435 * 126.36853 * 12 11 9 14 14 C 1.53043 * 109.31336 * 54.63480 * 13 12 11 15 15 C 1.53040 * 109.53800 * 298.63429 * 14 13 12 16 16 C 1.46924 * 120.62878 * 174.18974 * 11 9 8 17 17 H 1.09007 * 109.58752 * 113.84832 * 16 11 9 18 18 C 1.53001 * 109.58830 * 353.41718 * 16 11 9 19 19 C 1.52998 * 109.46967 * 181.66278 * 18 16 11 20 20 N 1.46500 * 109.46876 * 185.08135 * 19 18 16 21 21 C 1.36939 * 119.99901 * 180.02562 * 20 19 18 22 22 H 1.08001 * 119.99931 * 359.97438 * 21 20 19 23 23 C 1.38817 * 119.99717 * 179.97438 * 21 20 19 24 24 N 1.31617 * 120.00102 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 119.99746 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46996 * 59.99943 * 25 23 21 27 27 H 1.48497 * 109.47057 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.47038 * 300.00046 * 25 23 21 29 29 C 1.54812 * 110.48795 * 237.31208 * 2 1 3 30 30 H 1.08997 * 109.46889 * 298.91014 * 1 2 3 31 31 H 1.09006 * 109.46697 * 58.90456 * 1 2 3 32 32 H 1.08993 * 109.47150 * 178.90406 * 1 2 3 33 33 H 1.08998 * 109.47346 * 181.09297 * 3 2 1 34 34 H 1.09000 * 109.47028 * 301.09207 * 3 2 1 35 35 H 1.08999 * 109.47118 * 61.09224 * 3 2 1 36 36 H 1.09006 * 109.87947 * 240.12942 * 4 2 1 37 37 H 1.08999 * 109.88042 * 1.12969 * 4 2 1 38 38 H 1.08999 * 109.47061 * 190.72342 * 8 6 5 39 39 H 1.09006 * 109.47326 * 310.72622 * 8 6 5 40 40 H 1.08999 * 109.58340 * 246.15520 * 12 11 9 41 41 H 1.08999 * 109.58497 * 6.58361 * 12 11 9 42 42 H 1.09003 * 109.49791 * 174.58650 * 13 12 11 43 43 H 1.08999 * 109.49613 * 294.68512 * 13 12 11 44 44 H 1.08994 * 109.45810 * 58.65424 * 14 13 12 45 45 H 1.09004 * 109.45843 * 178.62915 * 14 13 12 46 46 H 1.08999 * 109.49554 * 181.31803 * 15 14 13 47 47 H 1.09005 * 109.49876 * 301.38139 * 15 14 13 48 48 H 1.08996 * 109.47138 * 301.66460 * 18 16 11 49 49 H 1.08999 * 109.46559 * 61.66585 * 18 16 11 50 50 H 1.09004 * 109.47161 * 305.07678 * 19 18 16 51 51 H 1.08999 * 109.47271 * 65.08369 * 19 18 16 52 52 H 0.96999 * 120.00474 * 0.02562 * 20 19 18 53 53 H 0.96997 * 119.99630 * 180.02562 * 24 23 21 54 54 H 1.09001 * 110.90678 * 20.40467 * 29 2 1 55 55 H 1.09002 * 110.90723 * 144.00233 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0643 1.4337 0.0000 4 6 2.0694 -0.7766 1.2167 5 8 2.8746 -1.8567 0.7155 6 6 2.3780 -2.1724 -0.6051 7 1 1.4698 -2.7713 -0.5385 8 6 3.4436 -2.9020 -1.4255 9 6 3.6327 -4.2937 -0.8789 10 8 2.9793 -4.6654 0.0728 11 7 4.5274 -5.1255 -1.4482 12 6 5.2378 -4.7355 -2.6738 13 6 6.7443 -4.8824 -2.4383 14 6 7.0459 -6.3055 -1.9628 15 6 6.3225 -6.5671 -0.6398 16 6 4.8152 -6.4370 -0.8517 17 1 4.4738 -7.2261 -1.5218 18 6 4.0977 -6.5569 0.4943 19 6 4.4326 -7.9067 1.1321 20 7 3.6522 -8.0732 2.3607 21 6 3.7865 -9.2128 3.1080 22 1 4.4673 -9.9891 2.7914 23 6 3.0474 -9.3702 4.2725 24 7 2.2181 -8.4240 4.6586 25 14 3.2300 -10.9252 5.2915 26 1 4.6392 -11.0605 5.7399 27 1 2.3392 -10.8475 6.4771 28 1 2.8573 -12.1033 4.4680 29 6 2.0719 -0.7832 -1.2205 30 1 -0.3633 0.4968 0.8996 31 1 -0.3633 0.5308 -0.8801 32 1 -0.3633 -1.0274 -0.0197 33 1 3.1539 1.4154 -0.0196 34 1 1.6938 1.9594 -0.8800 35 1 1.7256 1.9476 0.8996 36 1 2.6773 -0.1180 1.8370 37 1 1.2391 -1.1735 1.8009 38 1 3.1241 -2.9607 -2.4659 39 1 4.3855 -2.3568 -1.3647 40 1 4.9315 -5.3829 -3.4954 41 1 5.0054 -3.6986 -2.9166 42 1 7.2786 -4.6888 -3.3685 43 1 7.0651 -4.1694 -1.6788 44 1 6.7025 -7.0190 -2.7118 45 1 8.1202 -6.4199 -1.8179 46 1 6.5565 -7.5726 -0.2900 47 1 6.6477 -5.8386 0.1029 48 1 4.4247 -5.7526 1.1532 49 1 3.0212 -6.4852 0.3397 50 1 4.1883 -8.7085 0.4352 51 1 5.4958 -7.9428 1.3693 52 1 3.0404 -7.3762 2.6450 53 1 1.7020 -8.5339 5.4725 54 1 1.3140 -0.8616 -2.0000 55 1 2.9797 -0.3206 -1.6077 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271551238.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:08 Heat of formation + Delta-G solvation = -98.932591 kcal Electronic energy + Delta-G solvation = -31078.550150 eV Core-core repulsion = 27114.442425 eV Total energy + Delta-G solvation = -3964.107725 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.69490 -40.69019 -38.40653 -37.00153 -35.53912 -34.77527 -33.83410 -33.06968 -32.24850 -29.28981 -28.52276 -28.22328 -26.84632 -26.19069 -25.31411 -24.18761 -22.74943 -22.04221 -21.53987 -20.43889 -19.76895 -19.21367 -17.78480 -17.50243 -17.00970 -16.64205 -16.49000 -16.34206 -15.81956 -15.56852 -15.42672 -15.22112 -15.00283 -14.89689 -14.66921 -14.50985 -14.45038 -14.23870 -13.99231 -13.85859 -13.50709 -13.34782 -12.99889 -12.83397 -12.77351 -12.74136 -12.62608 -12.45317 -12.31860 -12.25275 -12.16598 -11.91226 -11.89025 -11.76850 -11.65219 -11.59000 -11.51896 -11.45556 -11.36014 -10.94541 -10.55301 -9.93328 -9.48420 -9.04346 -7.96406 -5.28101 1.42294 1.48468 1.54649 1.74818 2.04523 2.53903 2.94556 3.35110 3.42737 3.48694 3.72794 3.83943 3.87042 3.88737 3.97316 4.00811 4.11613 4.15065 4.20711 4.27935 4.35718 4.40761 4.46362 4.49655 4.56318 4.58724 4.64502 4.71992 4.75568 4.75849 4.77701 4.79414 4.82438 4.86238 4.93074 4.99690 5.02037 5.03408 5.12922 5.14070 5.17660 5.21206 5.25200 5.30584 5.37661 5.40128 5.43425 5.49786 5.51373 5.75880 6.02487 6.23908 6.55788 7.27883 7.36944 8.04780 8.29974 9.27711 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.009000 B = 0.003116 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3110.283949 B = 8984.269395 C =11670.117465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.097 4.097 3 C -0.131 4.131 4 C 0.044 3.956 5 O -0.398 6.398 6 C 0.084 3.916 7 H 0.047 0.953 8 C -0.124 4.124 9 C 0.496 3.504 10 O -0.568 6.568 11 N -0.612 5.612 12 C 0.100 3.900 13 C -0.132 4.132 14 C -0.115 4.115 15 C -0.130 4.130 16 C 0.158 3.842 17 H 0.078 0.922 18 C -0.091 4.091 19 C 0.149 3.851 20 N -0.750 5.750 21 C -0.251 4.251 22 H 0.079 0.921 23 C -0.083 4.083 24 N -0.974 5.974 25 Si 0.985 3.015 26 H -0.274 1.274 27 H -0.293 1.293 28 H -0.273 1.273 29 C -0.128 4.128 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.042 0.958 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.059 0.941 36 H 0.086 0.914 37 H 0.039 0.961 38 H 0.144 0.856 39 H 0.118 0.882 40 H 0.087 0.913 41 H 0.112 0.888 42 H 0.106 0.894 43 H 0.056 0.944 44 H 0.075 0.925 45 H 0.074 0.926 46 H 0.071 0.929 47 H 0.046 0.954 48 H 0.033 0.967 49 H 0.062 0.938 50 H 0.019 0.981 51 H 0.022 0.978 52 H 0.368 0.632 53 H 0.252 0.748 54 H 0.101 0.899 55 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.888 21.219 -24.327 32.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.097 4.097 3 C -0.188 4.188 4 C -0.033 4.033 5 O -0.317 6.317 6 C 0.026 3.974 7 H 0.065 0.935 8 C -0.163 4.163 9 C 0.285 3.715 10 O -0.446 6.446 11 N -0.346 5.346 12 C -0.021 4.021 13 C -0.170 4.170 14 C -0.153 4.153 15 C -0.168 4.168 16 C 0.054 3.946 17 H 0.095 0.905 18 C -0.129 4.129 19 C 0.022 3.978 20 N -0.392 5.392 21 C -0.383 4.383 22 H 0.097 0.903 23 C -0.275 4.275 24 N -0.625 5.625 25 Si 0.812 3.188 26 H -0.200 1.200 27 H -0.219 1.219 28 H -0.199 1.199 29 C -0.165 4.165 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.104 0.896 37 H 0.057 0.943 38 H 0.162 0.838 39 H 0.136 0.864 40 H 0.105 0.895 41 H 0.130 0.870 42 H 0.124 0.876 43 H 0.075 0.925 44 H 0.094 0.906 45 H 0.093 0.907 46 H 0.089 0.911 47 H 0.065 0.935 48 H 0.052 0.948 49 H 0.081 0.919 50 H 0.037 0.963 51 H 0.040 0.960 52 H 0.199 0.801 53 H 0.060 0.940 54 H 0.119 0.881 55 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 5.800 20.760 -23.705 32.039 hybrid contribution -0.654 -0.784 1.612 1.908 sum 5.145 19.976 -22.093 30.226 Atomic orbital electron populations 1.21882 0.93075 1.01572 1.03059 1.21939 0.96766 0.97053 0.93954 1.21804 1.00972 0.93117 1.02918 1.23451 0.94619 0.88393 0.96850 1.89000 1.56663 1.53346 1.32739 1.22981 0.95609 0.96278 0.82530 0.93465 1.21863 1.01899 0.90825 1.01729 1.21397 0.79066 0.88135 0.82888 1.90861 1.47809 1.76498 1.29467 1.48323 1.41575 1.16723 1.27999 1.22122 0.91944 1.03038 0.84961 1.21933 0.95500 0.96574 1.02948 1.21526 1.00441 0.97831 0.95458 1.21924 0.93606 1.02020 0.99256 1.20974 0.95413 0.85049 0.93128 0.90456 1.21885 1.00902 0.94711 0.95427 1.20970 0.93821 0.95708 0.87264 1.42660 1.50221 1.20576 1.25708 1.19694 1.19318 0.96297 1.02982 0.90290 1.25776 0.99513 1.02038 1.00126 1.69890 1.31117 1.35813 1.25681 0.85055 0.77470 0.78653 0.77618 1.20008 1.21931 1.19906 1.23286 1.03196 0.92622 0.97444 0.92182 0.90249 0.93858 0.92260 0.90595 0.92231 0.89619 0.94260 0.83795 0.86364 0.89519 0.86959 0.87582 0.92476 0.90584 0.90701 0.91056 0.93504 0.94771 0.91941 0.96263 0.96040 0.80079 0.93978 0.88062 0.88297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 8.25 71.98 0.59 -1.46 16 2 C -0.10 -1.55 0.99 -51.19 -0.05 -1.60 16 3 C -0.13 -1.50 8.27 71.98 0.60 -0.91 16 4 C 0.04 1.07 7.03 72.35 0.51 1.58 16 5 O -0.40 -12.47 10.91 -145.24 -1.58 -14.06 16 6 C 0.08 1.95 2.76 31.28 0.09 2.04 16 7 H 0.05 1.36 7.89 -2.39 -0.02 1.34 16 8 C -0.12 -2.30 3.82 29.85 0.11 -2.18 16 9 C 0.50 14.70 7.47 87.66 0.65 15.35 16 10 O -0.57 -24.14 11.22 0.71 0.01 -24.13 16 11 N -0.61 -15.06 2.98 -795.80 -2.37 -17.43 16 12 C 0.10 1.29 6.35 86.36 0.55 1.84 16 13 C -0.13 -1.60 6.08 30.67 0.19 -1.41 16 14 C -0.12 -1.88 5.89 30.62 0.18 -1.70 16 15 C -0.13 -3.35 4.79 30.53 0.15 -3.20 16 16 C 0.16 4.77 3.02 44.83 0.14 4.90 16 17 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 18 C -0.09 -3.90 3.29 30.59 0.10 -3.80 16 19 C 0.15 7.11 5.72 86.38 0.49 7.61 16 20 N -0.75 -45.06 5.60 -343.44 -1.92 -46.98 16 21 C -0.25 -15.68 9.99 84.03 0.84 -14.84 16 22 H 0.08 4.63 7.83 -2.91 -0.02 4.61 16 23 C -0.08 -5.23 5.50 84.86 0.47 -4.76 16 24 N -0.97 -65.95 13.06 21.65 0.28 -65.67 16 25 Si 0.98 49.57 29.55 68.60 2.03 51.60 16 26 H -0.27 -13.14 7.11 99.48 0.71 -12.43 16 27 H -0.29 -14.72 7.11 99.48 0.71 -14.01 16 28 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 29 C -0.13 -1.79 5.70 31.89 0.18 -1.60 16 30 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 32 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.06 0.69 8.13 -2.39 -0.02 0.67 16 34 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.09 1.91 7.69 -2.38 -0.02 1.89 16 37 H 0.04 1.07 7.69 -2.39 -0.02 1.05 16 38 H 0.14 1.40 7.72 -2.39 -0.02 1.38 16 39 H 0.12 1.76 7.92 -2.38 -0.02 1.74 16 40 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.11 0.78 5.93 -2.39 -0.01 0.77 16 42 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.07 1.95 6.85 -2.39 -0.02 1.93 16 47 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 48 H 0.03 1.65 7.26 -2.39 -0.02 1.63 16 49 H 0.06 3.07 6.22 -2.39 -0.01 3.05 16 50 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 51 H 0.02 1.00 6.83 -2.39 -0.02 0.98 16 52 H 0.37 24.24 7.67 -92.71 -0.71 23.53 16 53 H 0.25 16.32 8.31 -92.71 -0.77 15.55 16 54 H 0.10 1.02 7.86 -2.39 -0.02 1.00 16 55 H 0.10 1.01 7.79 -2.39 -0.02 0.99 16 Total: -1.00 -87.31 415.00 2.36 -84.96 By element: Atomic # 1 Polarization: 35.73 SS G_CDS: 0.14 Total: 35.87 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: 5.78 Total: -4.14 kcal Atomic # 7 Polarization: -126.07 SS G_CDS: -4.01 Total: -130.08 kcal Atomic # 8 Polarization: -36.62 SS G_CDS: -1.58 Total: -38.19 kcal Atomic # 14 Polarization: 49.57 SS G_CDS: 2.03 Total: 51.60 kcal Total: -87.31 2.36 -84.96 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271551238.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.976 kcal (2) G-P(sol) polarization free energy of solvation -87.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds