Wall clock time and date at job start Tue Mar 31 2020 21:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 115.56175 * 2 1 4 4 C 1.53074 * 117.51969 * 214.29351 * 2 1 3 5 5 C 1.52992 * 117.49904 * 145.03397 * 4 2 1 6 6 C 1.53002 * 117.52513 * 359.97438 * 4 2 1 7 7 C 1.52995 * 59.98616 * 252.52277 * 4 2 1 8 8 C 1.52999 * 117.49870 * 252.49818 * 7 4 2 9 9 C 1.50697 * 117.50175 * 107.49386 * 7 4 2 10 10 O 1.21281 * 120.00283 * 261.41690 * 9 7 4 11 11 N 1.34780 * 119.99735 * 81.41942 * 9 7 4 12 12 C 1.46919 * 120.63007 * 354.39044 * 11 9 7 13 13 C 1.53198 * 108.77634 * 233.58763 * 12 11 9 14 14 C 1.53109 * 109.33222 * 305.36719 * 13 12 11 15 15 C 1.53043 * 109.50292 * 61.33797 * 14 13 12 16 16 C 1.52995 * 109.49613 * 178.68738 * 15 14 13 17 17 O 1.42900 * 109.47289 * 299.93536 * 16 15 14 18 18 N 1.46498 * 109.49622 * 58.62153 * 15 14 13 19 19 C 1.36943 * 119.99899 * 60.06666 * 18 15 14 20 20 H 1.08002 * 120.00007 * 359.71754 * 19 18 15 21 21 C 1.38811 * 119.99647 * 179.97438 * 19 18 15 22 22 N 1.31614 * 120.00342 * 359.71905 * 21 19 18 23 23 Si 1.86803 * 119.99451 * 179.72305 * 21 19 18 24 24 H 1.48494 * 109.46950 * 90.00009 * 23 21 19 25 25 H 1.48499 * 109.46818 * 209.99940 * 23 21 19 26 26 H 1.48500 * 109.47166 * 329.99524 * 23 21 19 27 27 C 1.46930 * 120.63023 * 174.36910 * 11 9 7 28 28 H 1.08993 * 109.47201 * 282.57355 * 1 2 3 29 29 H 1.09002 * 109.47121 * 42.57481 * 1 2 3 30 30 H 1.09000 * 109.46624 * 162.56808 * 1 2 3 31 31 H 1.09005 * 109.47068 * 197.35739 * 3 2 1 32 32 H 1.09006 * 109.46962 * 317.34705 * 3 2 1 33 33 H 1.08996 * 109.47560 * 77.34826 * 3 2 1 34 34 H 1.09001 * 109.47350 * 136.83710 * 5 4 2 35 35 H 1.08998 * 109.47580 * 256.84104 * 5 4 2 36 36 H 1.09000 * 109.47197 * 16.84504 * 5 4 2 37 37 H 1.08992 * 109.47512 * 358.55848 * 6 4 2 38 38 H 1.09001 * 109.46836 * 118.55901 * 6 4 2 39 39 H 1.08997 * 109.47342 * 238.55200 * 6 4 2 40 40 H 1.09007 * 109.46917 * 271.39849 * 8 7 4 41 41 H 1.09000 * 109.47322 * 31.39875 * 8 7 4 42 42 H 1.09001 * 109.47226 * 151.40135 * 8 7 4 43 43 H 1.09000 * 109.58934 * 353.37246 * 12 11 9 44 44 H 1.09001 * 109.59247 * 113.80374 * 12 11 9 45 45 H 1.09002 * 109.49414 * 65.31497 * 13 12 11 46 46 H 1.08998 * 109.50055 * 185.41148 * 13 12 11 47 47 H 1.09000 * 109.44713 * 301.34802 * 14 13 12 48 48 H 1.08990 * 109.50718 * 181.36748 * 14 13 12 49 49 H 1.09002 * 109.47305 * 59.93947 * 16 15 14 50 50 H 1.09000 * 109.47287 * 179.97438 * 16 15 14 51 51 H 0.96693 * 114.00360 * 179.97438 * 17 16 15 52 52 H 0.97005 * 120.00300 * 240.06204 * 18 15 14 53 53 H 0.97004 * 120.00199 * 179.97438 * 22 21 19 54 54 H 1.09004 * 109.58456 * 6.62557 * 27 11 9 55 55 H 1.09000 * 109.58693 * 246.19923 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3803 0.0000 4 6 2.2373 -1.1215 -0.7649 5 6 3.5499 -0.7764 -1.4709 6 6 1.3607 -2.1579 -1.4709 7 6 2.2365 -1.1209 0.7651 8 6 3.5487 -0.7756 1.4720 9 6 1.3720 -2.1404 1.4609 10 8 0.2785 -1.8241 1.8794 11 7 1.8142 -3.4039 1.6184 12 6 3.0808 -3.8348 1.0114 13 6 2.8228 -5.0883 0.1693 14 6 2.1481 -6.1529 1.0386 15 6 0.8036 -5.6237 1.5430 16 6 0.1147 -6.6997 2.3847 17 8 -0.1031 -7.8635 1.5846 18 7 -0.0457 -5.2785 0.4003 19 6 -0.3913 -6.2402 -0.5112 20 1 -0.0339 -7.2522 -0.3903 21 6 -1.1964 -5.9132 -1.5936 22 7 -1.6323 -4.6800 -1.7408 23 14 -1.6614 -7.2234 -2.8413 24 1 -2.9231 -7.8830 -2.4194 25 1 -1.8532 -6.5935 -4.1723 26 1 -0.5775 -8.2350 -2.9240 27 6 1.0388 -4.3763 2.4006 28 1 -0.3633 0.2237 1.0029 29 1 -0.3633 0.7568 -0.6953 30 1 -0.3632 -0.9805 -0.3079 31 1 3.2318 1.2848 -0.3066 32 1 1.6651 2.0342 -0.6963 33 1 2.1439 1.8052 1.0026 34 1 4.2747 -1.5724 -1.2999 35 1 3.3705 -0.6720 -2.5409 36 1 3.9400 0.1611 -1.0747 37 1 0.3105 -1.9325 -1.2855 38 1 1.5548 -2.1280 -2.5431 39 1 1.5922 -3.1515 -1.0874 40 1 4.1327 -1.6843 1.6182 41 1 4.1163 -0.0731 0.8617 42 1 3.3319 -0.3234 2.4398 43 1 3.4697 -3.0404 0.3744 44 1 3.8026 -4.0636 1.7955 45 1 2.1719 -4.8365 -0.6679 46 1 3.7697 -5.4740 -0.2086 47 1 2.7887 -6.3863 1.8891 48 1 1.9852 -7.0548 0.4487 49 1 0.7469 -6.9562 3.2348 50 1 -0.8427 -6.3223 2.7441 51 1 -0.5369 -8.5885 2.0548 52 1 -0.3633 -4.3687 0.2894 53 1 -2.1946 -4.4514 -2.4975 54 1 0.0802 -3.9391 2.6803 55 1 1.5940 -4.6492 3.2981 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273936538.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:40 Heat of formation + Delta-G solvation = -59.499512 kcal Electronic energy + Delta-G solvation = -34064.538472 eV Core-core repulsion = 30102.140694 eV Total energy + Delta-G solvation = -3962.397778 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.14990 -40.20954 -38.59993 -37.12055 -35.52003 -33.76127 -32.68018 -31.92525 -31.59361 -30.53330 -29.68429 -26.97556 -26.83815 -26.72289 -26.10065 -25.49743 -23.13767 -22.28708 -20.01625 -19.18446 -19.07959 -18.70843 -17.88325 -17.40560 -16.82030 -16.72653 -16.22696 -16.02067 -15.79217 -15.46390 -15.22157 -15.13994 -14.78475 -14.68007 -14.41191 -14.18426 -13.97569 -13.74731 -13.50836 -13.43975 -13.27322 -13.19059 -12.99062 -12.96472 -12.85769 -12.73672 -12.63317 -12.59202 -12.55850 -12.48939 -12.42740 -11.97249 -11.74372 -11.59677 -11.44303 -11.29723 -11.25552 -10.81085 -10.66961 -10.53786 -10.34216 -10.01028 -9.43780 -8.80663 -7.72172 -4.96646 1.45859 1.47011 1.54692 1.70820 2.06915 2.66442 2.68969 3.45545 3.51097 3.63264 3.66653 3.71941 3.84176 3.99596 4.06977 4.18136 4.21131 4.22264 4.29706 4.42460 4.49631 4.55273 4.59134 4.64131 4.67333 4.70181 4.79198 4.81478 4.82808 4.86435 4.89752 4.91887 4.95036 4.97928 5.05379 5.06151 5.07310 5.15884 5.16829 5.20845 5.29302 5.35481 5.36767 5.46167 5.50533 5.61905 5.69974 5.73261 5.83235 5.95226 6.47694 6.58697 7.13826 7.35619 7.55366 8.27580 8.51830 9.50336 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012427 B = 0.005115 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.667217 B = 5472.835915 C = 6452.955416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.095 4.095 3 C -0.112 4.112 4 C -0.090 4.090 5 C -0.116 4.116 6 C -0.123 4.123 7 C -0.145 4.145 8 C -0.108 4.108 9 C 0.548 3.452 10 O -0.583 6.583 11 N -0.593 5.593 12 C 0.112 3.888 13 C -0.129 4.129 14 C -0.107 4.107 15 C 0.177 3.823 16 C 0.077 3.923 17 O -0.565 6.565 18 N -0.710 5.710 19 C -0.177 4.177 20 H 0.091 0.909 21 C -0.089 4.089 22 N -0.970 5.970 23 Si 0.953 3.047 24 H -0.301 1.301 25 H -0.308 1.308 26 H -0.275 1.275 27 C 0.118 3.882 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.034 0.966 31 H 0.090 0.910 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.090 0.910 37 H 0.037 0.963 38 H 0.052 0.948 39 H 0.059 0.941 40 H 0.077 0.923 41 H 0.094 0.906 42 H 0.059 0.941 43 H 0.096 0.904 44 H 0.095 0.905 45 H 0.045 0.955 46 H 0.085 0.915 47 H 0.077 0.923 48 H 0.045 0.955 49 H 0.066 0.934 50 H 0.019 0.981 51 H 0.375 0.625 52 H 0.366 0.634 53 H 0.236 0.764 54 H 0.059 0.941 55 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.765 7.068 8.271 20.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.095 4.095 3 C -0.168 4.168 4 C -0.090 4.090 5 C -0.172 4.172 6 C -0.180 4.180 7 C -0.148 4.148 8 C -0.165 4.165 9 C 0.337 3.663 10 O -0.463 6.463 11 N -0.324 5.324 12 C -0.009 4.009 13 C -0.167 4.167 14 C -0.147 4.147 15 C 0.086 3.914 16 C -0.004 4.004 17 O -0.371 6.371 18 N -0.349 5.349 19 C -0.309 4.309 20 H 0.108 0.892 21 C -0.280 4.280 22 N -0.624 5.624 23 Si 0.787 3.213 24 H -0.230 1.230 25 H -0.236 1.236 26 H -0.200 1.200 27 C -0.005 4.005 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.053 0.947 31 H 0.108 0.892 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.081 0.919 36 H 0.108 0.892 37 H 0.056 0.944 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.096 0.904 41 H 0.113 0.887 42 H 0.078 0.922 43 H 0.114 0.886 44 H 0.113 0.887 45 H 0.064 0.936 46 H 0.103 0.897 47 H 0.096 0.904 48 H 0.064 0.936 49 H 0.084 0.916 50 H 0.038 0.962 51 H 0.222 0.778 52 H 0.198 0.802 53 H 0.045 0.955 54 H 0.077 0.923 55 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 17.501 7.420 7.964 20.610 hybrid contribution -2.170 -1.174 -0.617 2.544 sum 15.331 6.246 7.347 18.111 Atomic orbital electron populations 1.21326 0.93996 1.00683 1.00844 1.21844 0.93782 0.92389 1.01522 1.21476 1.01228 0.91671 1.02472 1.21862 0.98890 0.98350 0.89914 1.21554 0.92926 1.02936 0.99810 1.21487 0.98546 0.98421 0.99504 1.21741 0.99470 0.99179 0.94438 1.21445 0.91869 1.03123 1.00030 1.20106 0.85483 0.82746 0.77947 1.90647 1.22993 1.80368 1.52291 1.47875 1.23408 1.09271 1.51854 1.22003 0.84304 0.97289 0.97337 1.21846 1.00534 0.95554 0.98731 1.21735 0.95557 0.98011 0.99347 1.20344 0.91380 0.91762 0.87947 1.22625 0.97865 0.86912 0.92962 1.86728 1.83027 1.25751 1.41582 1.42521 1.57822 1.08994 1.25544 1.19730 1.20094 0.91797 0.99285 0.89153 1.25308 1.03513 0.97461 1.01676 1.69860 1.42116 1.18471 1.31925 0.85394 0.77693 0.79271 0.78987 1.23009 1.23580 1.20004 1.21618 0.96667 0.88402 0.93851 0.93133 0.92240 0.94713 0.89191 0.91607 0.91658 0.90739 0.91909 0.89150 0.94446 0.92903 0.92231 0.90395 0.88721 0.92153 0.88575 0.88701 0.93634 0.89704 0.90445 0.93608 0.91566 0.96230 0.77760 0.80226 0.95498 0.92283 0.87979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.01 7.82 71.98 0.56 -3.45 16 2 C -0.09 -2.65 2.70 -52.15 -0.14 -2.79 16 3 C -0.11 -2.14 8.63 71.98 0.62 -1.52 16 4 C -0.09 -2.46 1.91 -52.16 -0.10 -2.56 16 5 C -0.12 -2.16 8.54 71.98 0.61 -1.54 16 6 C -0.12 -4.69 8.85 71.98 0.64 -4.05 16 7 C -0.15 -3.96 1.35 -52.93 -0.07 -4.03 16 8 C -0.11 -1.95 8.37 71.98 0.60 -1.35 16 9 C 0.55 19.63 5.55 87.66 0.49 20.11 16 10 O -0.58 -26.25 13.59 -3.03 -0.04 -26.29 16 11 N -0.59 -18.91 2.79 -818.89 -2.29 -21.20 16 12 C 0.11 2.81 4.43 86.37 0.38 3.19 16 13 C -0.13 -3.92 5.82 30.70 0.18 -3.75 16 14 C -0.11 -3.48 4.39 30.64 0.13 -3.35 16 15 C 0.18 6.59 0.68 3.68 0.00 6.59 16 16 C 0.08 2.60 6.08 71.98 0.44 3.04 16 17 O -0.57 -20.58 9.97 -148.98 -1.49 -22.07 16 18 N -0.71 -35.18 4.22 -302.99 -1.28 -36.46 16 19 C -0.18 -9.71 8.28 84.03 0.70 -9.01 16 20 H 0.09 4.94 5.31 -2.91 -0.02 4.93 16 21 C -0.09 -5.29 5.50 84.86 0.47 -4.82 16 22 N -0.97 -61.64 13.06 21.65 0.28 -61.36 16 23 Si 0.95 49.16 29.55 68.60 2.03 51.19 16 24 H -0.30 -15.63 7.11 99.48 0.71 -14.92 16 25 H -0.31 -16.25 7.11 99.48 0.71 -15.54 16 26 H -0.27 -13.45 7.11 99.48 0.71 -12.74 16 27 C 0.12 3.96 5.15 86.36 0.45 4.41 16 28 H 0.05 1.92 7.33 -2.39 -0.02 1.91 16 29 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.03 1.55 4.77 -2.39 -0.01 1.53 16 31 H 0.09 1.25 4.45 -2.38 -0.01 1.24 16 32 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 33 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.07 1.20 8.02 -2.39 -0.02 1.18 16 35 H 0.06 1.20 8.03 -2.39 -0.02 1.18 16 36 H 0.09 1.21 4.39 -2.39 -0.01 1.20 16 37 H 0.04 1.73 5.10 -2.39 -0.01 1.72 16 38 H 0.05 1.93 7.94 -2.39 -0.02 1.91 16 39 H 0.06 2.49 4.82 -2.39 -0.01 2.48 16 40 H 0.08 1.19 6.21 -2.38 -0.01 1.18 16 41 H 0.09 1.22 5.26 -2.39 -0.01 1.21 16 42 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.10 2.20 4.71 -2.39 -0.01 2.19 16 44 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.04 1.85 5.57 -2.39 -0.01 1.84 16 46 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 47 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 48 H 0.05 1.76 6.82 -2.39 -0.02 1.74 16 49 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 50 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 51 H 0.37 9.89 9.12 -74.06 -0.68 9.21 16 52 H 0.37 20.91 7.65 -92.70 -0.71 20.20 16 53 H 0.24 15.00 8.31 -92.71 -0.77 14.23 16 54 H 0.06 2.39 7.00 -2.39 -0.02 2.37 16 55 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 Total: -1.00 -77.54 390.77 2.72 -74.82 By element: Atomic # 1 Polarization: 46.70 SS G_CDS: -0.46 Total: 46.24 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: 5.96 Total: -4.88 kcal Atomic # 7 Polarization: -115.74 SS G_CDS: -3.28 Total: -119.02 kcal Atomic # 8 Polarization: -46.83 SS G_CDS: -1.53 Total: -48.35 kcal Atomic # 14 Polarization: 49.16 SS G_CDS: 2.03 Total: 51.19 kcal Total: -77.54 2.72 -74.82 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273936538.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.323 kcal (2) G-P(sol) polarization free energy of solvation -77.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds