Wall clock time and date at job start Tue Mar 31 2020 21:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 113.99672 * 2 1 4 4 C 1.53004 * 109.46850 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47140 * 65.00469 * 4 3 2 6 6 C 1.36934 * 119.99397 * 269.99887 * 5 4 3 7 7 H 1.08004 * 120.00242 * 141.78964 * 6 5 4 8 8 C 1.38811 * 120.00249 * 321.78891 * 6 5 4 9 9 N 1.31622 * 120.00057 * 339.29372 * 8 6 5 10 10 Si 1.86803 * 120.00195 * 159.29976 * 8 6 5 11 11 H 1.48500 * 109.47065 * 59.99885 * 10 8 6 12 12 H 1.48496 * 109.46983 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.46905 * 299.99939 * 10 8 6 14 14 C 1.46493 * 120.00403 * 89.99402 * 5 4 3 15 15 C 1.53074 * 109.43984 * 124.57162 * 14 5 4 16 16 C 1.53197 * 109.29237 * 181.23742 * 15 14 5 17 17 N 1.46920 * 108.89292 * 305.57960 * 16 15 14 18 18 C 1.34780 * 120.62898 * 233.55558 * 17 16 15 19 19 O 1.21275 * 119.99975 * 0.02562 * 18 17 16 20 20 C 1.50698 * 119.99990 * 179.97438 * 18 17 16 21 21 C 1.52999 * 109.47461 * 180.02562 * 20 18 17 22 22 C 1.52997 * 109.47518 * 180.02562 * 21 20 18 23 23 C 1.53001 * 115.54748 * 34.33237 * 22 21 20 24 24 C 1.53002 * 117.50010 * 248.62222 * 22 21 20 25 25 C 1.52998 * 117.49920 * 179.97438 * 22 21 20 26 26 C 1.46921 * 118.74359 * 53.54006 * 17 16 15 27 27 C 1.53039 * 109.46352 * 244.77759 * 14 5 4 28 28 H 1.09010 * 109.47183 * 299.99702 * 1 2 3 29 29 H 1.09003 * 109.47419 * 59.99763 * 1 2 3 30 30 H 1.09004 * 109.46968 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47137 * 60.00499 * 3 2 1 32 32 H 1.08998 * 109.47374 * 300.00345 * 3 2 1 33 33 H 1.08991 * 109.46992 * 305.00047 * 4 3 2 34 34 H 1.09009 * 109.46581 * 184.99803 * 4 3 2 35 35 H 0.96992 * 120.00121 * 180.02562 * 9 8 6 36 36 H 1.09004 * 109.46005 * 4.75260 * 14 5 4 37 37 H 1.08998 * 109.39168 * 61.36686 * 15 14 5 38 38 H 1.08996 * 109.62629 * 301.25623 * 15 14 5 39 39 H 1.09003 * 109.58076 * 185.71960 * 16 15 14 40 40 H 1.09003 * 109.58650 * 65.44375 * 16 15 14 41 41 H 1.09001 * 109.47627 * 300.00836 * 20 18 17 42 42 H 1.09003 * 109.46961 * 60.00586 * 20 18 17 43 43 H 1.09001 * 109.47072 * 300.00796 * 21 20 18 44 44 H 1.09003 * 109.46864 * 60.00147 * 21 20 18 45 45 H 1.08998 * 109.47265 * 85.58254 * 23 22 21 46 46 H 1.09000 * 109.46931 * 205.57941 * 23 22 21 47 47 H 1.09000 * 109.47181 * 325.58145 * 23 22 21 48 48 H 1.08996 * 117.49670 * 0.02562 * 24 22 21 49 49 H 1.08996 * 117.49403 * 145.02100 * 24 22 21 50 50 H 1.08999 * 117.50219 * 214.98069 * 25 22 21 51 51 H 1.09002 * 117.50104 * 0.02562 * 25 22 21 52 52 H 1.09006 * 109.58618 * 66.17029 * 26 17 16 53 53 H 1.08997 * 109.59393 * 186.45780 * 26 17 16 54 54 H 1.09004 * 109.49703 * 58.68044 * 27 14 5 55 55 H 1.08995 * 109.52513 * 298.59599 * 27 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5646 -1.2528 6 6 4.0967 -0.7968 -1.3369 7 1 3.8117 -1.3093 -2.2439 8 6 4.5858 -1.5182 -0.2566 9 7 5.3007 -0.9141 0.6688 10 14 4.2295 -3.3466 -0.1160 11 1 4.7850 -4.0515 -1.2992 12 1 4.8594 -3.8801 1.1183 13 1 2.7614 -3.5616 -0.0559 14 6 4.2862 1.4008 -2.4148 15 6 5.7086 1.0997 -2.8936 16 6 6.0409 1.9978 -4.0894 17 7 5.0057 1.8236 -5.1173 18 6 5.3417 1.5051 -6.3831 19 8 6.5078 1.3590 -6.6826 20 6 4.2682 1.3293 -7.4261 21 6 4.9132 0.9726 -8.7669 22 6 3.8234 0.7948 -9.8259 23 6 2.6057 1.7094 -9.6796 24 6 3.5863 -0.6172 -10.3654 25 6 4.2689 0.4335 -11.2443 26 6 3.5974 2.0029 -4.7392 27 6 3.2908 1.1025 -3.5384 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6885 1.8465 -0.8899 33 1 3.8514 0.5683 0.8409 34 1 3.9784 2.1767 0.0889 35 1 5.6427 -1.4182 1.4235 36 1 4.2141 2.4520 -2.1355 37 1 5.7756 0.0542 -3.1942 38 1 6.4151 1.2926 -2.0863 39 1 7.0121 1.7180 -4.4977 40 1 6.0658 3.0392 -3.7685 41 1 3.5946 0.5278 -7.1227 42 1 3.7058 2.2573 -7.5286 43 1 5.5871 1.7738 -9.0704 44 1 5.4754 0.0445 -8.6641 45 1 2.8062 2.6624 -10.1692 46 1 1.7393 1.2379 -10.1435 47 1 2.4040 1.8796 -8.6221 48 1 4.2064 -1.4194 -9.9655 49 1 2.5625 -0.8947 -10.6161 50 1 3.6941 0.8468 -12.0730 51 1 5.3384 0.3221 -11.4229 52 1 3.4212 3.0443 -4.4694 53 1 2.9563 1.7291 -5.5771 54 1 2.2772 1.2966 -3.1875 55 1 3.3792 0.0575 -3.8354 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277412677.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:55 Heat of formation + Delta-G solvation = -58.639635 kcal Electronic energy + Delta-G solvation = -31152.243932 eV Core-core repulsion = 27189.883441 eV Total energy + Delta-G solvation = -3962.360491 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.24274 -39.44778 -38.92265 -38.21291 -36.48951 -33.93459 -33.37054 -32.16737 -31.76810 -29.76878 -29.03538 -27.13209 -26.78329 -25.73760 -24.57635 -23.73974 -23.25436 -22.31568 -21.44058 -19.96699 -19.59723 -18.42932 -17.89320 -17.26434 -16.85363 -16.71853 -16.62109 -16.50312 -16.09268 -15.66819 -15.46024 -15.31363 -15.16805 -15.10495 -14.64372 -14.42287 -14.00841 -13.82692 -13.58674 -13.43137 -13.31729 -13.17020 -13.04524 -12.94880 -12.80233 -12.70646 -12.53701 -12.37168 -12.31957 -12.21899 -12.08204 -12.02820 -11.88638 -11.78756 -11.54257 -11.44450 -11.06895 -10.96879 -10.71501 -10.44694 -10.37017 -10.26411 -9.57336 -8.40282 -7.69726 -5.28346 1.45014 1.48373 1.54222 1.67343 2.10198 2.58765 2.87508 3.26082 3.40919 3.51623 3.64920 3.77527 3.92586 4.01217 4.04899 4.17235 4.26243 4.27142 4.30533 4.43542 4.45826 4.46731 4.50317 4.56533 4.64009 4.67195 4.69655 4.76639 4.81218 4.84952 4.86648 4.88514 4.92322 4.94461 4.96202 5.00086 5.04611 5.05761 5.15225 5.16282 5.21262 5.26659 5.28552 5.30069 5.51450 5.51991 5.64594 5.71523 5.78160 5.89493 6.51723 6.54804 6.73252 7.22822 7.32361 8.01965 8.50547 9.26142 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012341 B = 0.002847 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.295787 B = 9833.181802 C = 9989.025556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.398 6.398 3 C 0.057 3.943 4 C 0.140 3.860 5 N -0.583 5.583 6 C -0.217 4.217 7 H 0.040 0.960 8 C -0.028 4.028 9 N -0.920 5.920 10 Si 0.936 3.064 11 H -0.285 1.285 12 H -0.298 1.298 13 H -0.283 1.283 14 C 0.173 3.827 15 C -0.118 4.118 16 C 0.121 3.879 17 N -0.607 5.607 18 C 0.504 3.496 19 O -0.595 6.595 20 C -0.128 4.128 21 C -0.062 4.062 22 C -0.130 4.130 23 C -0.122 4.122 24 C -0.181 4.181 25 C -0.176 4.176 26 C 0.114 3.886 27 C -0.130 4.130 28 H 0.044 0.956 29 H 0.047 0.953 30 H 0.077 0.923 31 H 0.043 0.957 32 H 0.046 0.954 33 H 0.062 0.938 34 H 0.053 0.947 35 H 0.244 0.756 36 H 0.067 0.933 37 H 0.030 0.970 38 H 0.048 0.952 39 H 0.065 0.935 40 H 0.084 0.916 41 H 0.106 0.894 42 H 0.127 0.873 43 H 0.061 0.939 44 H 0.047 0.953 45 H 0.065 0.935 46 H 0.064 0.936 47 H 0.076 0.924 48 H 0.083 0.917 49 H 0.105 0.895 50 H 0.106 0.894 51 H 0.086 0.914 52 H 0.093 0.907 53 H 0.110 0.890 54 H 0.075 0.925 55 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.499 10.200 -16.471 22.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.317 6.317 3 C -0.022 4.022 4 C 0.013 3.987 5 N -0.303 5.303 6 C -0.348 4.348 7 H 0.058 0.942 8 C -0.225 4.225 9 N -0.565 5.565 10 Si 0.767 3.233 11 H -0.212 1.212 12 H -0.224 1.224 13 H -0.210 1.210 14 C 0.066 3.934 15 C -0.158 4.158 16 C -0.002 4.002 17 N -0.339 5.339 18 C 0.295 3.705 19 O -0.477 6.477 20 C -0.167 4.167 21 C -0.100 4.100 22 C -0.130 4.130 23 C -0.178 4.178 24 C -0.217 4.217 25 C -0.213 4.213 26 C -0.009 4.009 27 C -0.170 4.170 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.095 0.905 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.054 0.946 36 H 0.085 0.915 37 H 0.049 0.951 38 H 0.066 0.934 39 H 0.083 0.917 40 H 0.102 0.898 41 H 0.124 0.876 42 H 0.145 0.855 43 H 0.079 0.921 44 H 0.066 0.934 45 H 0.084 0.916 46 H 0.083 0.917 47 H 0.095 0.905 48 H 0.101 0.899 49 H 0.123 0.877 50 H 0.125 0.875 51 H 0.105 0.895 52 H 0.111 0.889 53 H 0.128 0.872 54 H 0.094 0.906 55 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -9.709 9.901 -16.457 21.520 hybrid contribution 0.242 -1.432 0.780 1.648 sum -9.467 8.469 -15.677 20.177 Atomic orbital electron populations 1.22796 0.81737 1.02338 1.00109 1.88158 1.19442 1.28894 1.95183 1.23243 0.96555 0.83871 0.98490 1.20973 0.89875 0.96199 0.91616 1.43882 1.75668 1.02054 1.08695 1.18642 1.33450 0.83374 0.99367 0.94216 1.25489 0.97444 0.99823 0.99716 1.70054 1.36348 1.36220 1.13923 0.85835 0.77790 0.83440 0.76262 1.21192 1.22447 1.20963 1.20546 0.91403 0.93802 0.87623 1.22060 0.99306 0.98373 0.96074 1.21496 0.91428 0.99781 0.87517 1.48285 1.08637 1.68482 1.08540 1.21455 0.90497 0.74941 0.83617 1.90644 1.22525 1.53339 1.81192 1.21807 0.96749 1.05695 0.92447 1.20760 0.95936 1.01295 0.91974 1.21536 0.98591 0.98090 0.94776 1.21514 0.94528 0.98434 1.03356 1.23230 1.02250 0.92042 1.04223 1.23091 1.00928 1.03563 0.93754 1.21988 0.79965 1.00743 0.98157 1.22217 1.00041 0.99087 0.95661 0.93720 0.93485 0.90481 0.93859 0.93624 0.92015 0.92892 0.94631 0.91513 0.95072 0.93370 0.91651 0.89787 0.87605 0.85530 0.92068 0.93423 0.91614 0.91706 0.90503 0.89866 0.87706 0.87522 0.89508 0.88885 0.87190 0.90644 0.94365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 11.01 113.37 1.25 2.04 16 2 O -0.40 -16.45 10.18 -148.98 -1.52 -17.97 16 3 C 0.06 2.08 6.28 71.98 0.45 2.53 16 4 C 0.14 6.13 5.70 86.38 0.49 6.62 16 5 N -0.58 -26.69 2.34 -677.82 -1.58 -28.27 16 6 C -0.22 -11.56 7.60 84.03 0.64 -10.92 16 7 H 0.04 2.21 7.09 -2.91 -0.02 2.19 16 8 C -0.03 -1.60 4.97 84.86 0.42 -1.18 16 9 N -0.92 -53.90 11.47 21.65 0.25 -53.66 16 10 Si 0.94 46.71 29.60 68.60 2.03 48.74 16 11 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 12 H -0.30 -14.94 7.11 99.48 0.71 -14.24 16 13 H -0.28 -14.03 7.11 99.48 0.71 -13.32 16 14 C 0.17 6.33 2.59 45.03 0.12 6.44 16 15 C -0.12 -4.61 5.25 30.69 0.16 -4.45 16 16 C 0.12 3.84 6.43 86.37 0.56 4.40 16 17 N -0.61 -16.83 2.97 -818.91 -2.44 -19.27 16 18 C 0.50 14.62 7.70 87.66 0.67 15.29 16 19 O -0.60 -22.46 15.39 -3.02 -0.05 -22.51 16 20 C -0.13 -2.48 3.05 29.85 0.09 -2.39 16 21 C -0.06 -1.30 4.69 30.59 0.14 -1.16 16 22 C -0.13 -2.10 2.46 -52.18 -0.13 -2.22 16 23 C -0.12 -1.42 9.49 71.98 0.68 -0.74 16 24 C -0.18 -2.91 9.83 30.61 0.30 -2.61 16 25 C -0.18 -2.71 9.97 30.61 0.31 -2.41 16 26 C 0.11 2.42 6.34 86.36 0.55 2.97 16 27 C -0.13 -3.93 5.38 30.67 0.17 -3.77 16 28 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 29 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 31 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.06 3.28 5.54 -2.39 -0.01 3.27 16 34 H 0.05 2.10 7.88 -2.38 -0.02 2.08 16 35 H 0.24 14.18 8.31 -92.71 -0.77 13.40 16 36 H 0.07 2.18 7.77 -2.39 -0.02 2.16 16 37 H 0.03 1.43 7.61 -2.39 -0.02 1.41 16 38 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.06 2.32 7.01 -2.39 -0.02 2.31 16 40 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 41 H 0.11 1.88 7.70 -2.39 -0.02 1.86 16 42 H 0.13 1.68 6.24 -2.39 -0.01 1.66 16 43 H 0.06 1.41 8.10 -2.39 -0.02 1.39 16 44 H 0.05 1.22 7.86 -2.39 -0.02 1.20 16 45 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.06 0.67 7.90 -2.39 -0.02 0.65 16 47 H 0.08 0.76 5.59 -2.39 -0.01 0.74 16 48 H 0.08 1.51 8.05 -2.39 -0.02 1.49 16 49 H 0.10 1.41 8.05 -2.39 -0.02 1.40 16 50 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 51 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 52 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 53 H 0.11 1.67 5.93 -2.39 -0.01 1.66 16 54 H 0.08 2.16 8.14 -2.39 -0.02 2.15 16 55 H 0.04 1.39 7.24 -2.39 -0.02 1.37 16 Total: -1.00 -70.87 423.58 4.40 -66.46 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: 0.84 Total: 18.01 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: 6.87 Total: 8.46 kcal Atomic # 7 Polarization: -97.42 SS G_CDS: -3.77 Total: -101.20 kcal Atomic # 8 Polarization: -38.91 SS G_CDS: -1.56 Total: -40.47 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.74 kcal Total: -70.87 4.40 -66.46 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277412677.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.824 kcal (2) G-P(sol) polarization free energy of solvation -70.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds