Wall clock time and date at job start Tue Mar 31 2020 21:23:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50694 * 1
3 3 C 1.29438 * 117.96688 * 2 1
4 4 C 1.50706 * 117.95816 * 0.44353 * 3 2 1
5 5 C 1.50068 * 124.07923 * 180.46684 * 3 2 1
6 6 C 1.53016 * 110.14619 * 342.87231 * 5 3 2
7 7 C 1.53007 * 109.64324 * 169.33284 * 6 5 3
8 8 C 1.50703 * 109.64062 * 289.74820 * 6 5 3
9 9 O 1.21280 * 120.00231 * 353.74034 * 8 6 5
10 10 N 1.34777 * 119.99760 * 173.73658 * 8 6 5
11 11 C 1.46500 * 119.99744 * 179.97438 * 10 8 6
12 12 C 1.53003 * 109.46947 * 179.97438 * 11 10 8
13 13 O 1.42903 * 109.47117 * 65.00464 * 12 11 10
14 14 C 1.42894 * 114.00026 * 179.97438 * 13 12 11
15 15 C 1.52999 * 109.46968 * 179.97438 * 14 13 12
16 16 C 1.53004 * 109.46920 * 180.02562 * 15 14 13
17 17 N 1.46507 * 109.46966 * 180.02562 * 16 15 14
18 18 C 1.36935 * 120.00045 * 179.97438 * 17 16 15
19 19 H 1.08002 * 119.99724 * 0.02562 * 18 17 16
20 20 C 1.38808 * 120.00335 * 179.97438 * 18 17 16
21 21 N 1.31629 * 119.99524 * 0.02562 * 20 18 17
22 22 Si 1.86798 * 120.00412 * 180.02562 * 20 18 17
23 23 H 1.48505 * 109.47059 * 60.00050 * 22 20 18
24 24 H 1.48503 * 109.47029 * 180.02562 * 22 20 18
25 25 H 1.48500 * 109.47034 * 300.00097 * 22 20 18
26 26 C 1.53393 * 108.44107 * 49.43246 * 6 5 3
27 27 C 1.50070 * 117.96011 * 180.02562 * 2 1 3
28 28 H 1.09004 * 109.47218 * 5.02684 * 1 2 3
29 29 H 1.09003 * 109.47232 * 125.01881 * 1 2 3
30 30 H 1.08991 * 109.47604 * 245.02726 * 1 2 3
31 31 H 1.09006 * 109.47115 * 179.49640 * 4 3 2
32 32 H 1.08987 * 109.47326 * 299.49810 * 4 3 2
33 33 H 1.08994 * 109.46909 * 59.50035 * 4 3 2
34 34 H 1.09001 * 109.35975 * 222.66123 * 5 3 2
35 35 H 1.08999 * 109.24667 * 103.00692 * 5 3 2
36 36 H 1.09002 * 109.47009 * 180.42088 * 7 6 5
37 37 H 1.08998 * 109.46887 * 300.41823 * 7 6 5
38 38 H 1.08992 * 109.46841 * 60.41851 * 7 6 5
39 39 H 0.97001 * 120.00618 * 0.02562 * 10 8 6
40 40 H 1.09001 * 109.46991 * 60.00721 * 11 10 8
41 41 H 1.08997 * 109.47225 * 300.00394 * 11 10 8
42 42 H 1.08998 * 109.47377 * 305.00230 * 12 11 10
43 43 H 1.09006 * 109.46904 * 184.99833 * 12 11 10
44 44 H 1.08999 * 109.47745 * 299.99863 * 14 13 12
45 45 H 1.09008 * 109.47161 * 60.00356 * 14 13 12
46 46 H 1.09002 * 109.47133 * 299.99824 * 15 14 13
47 47 H 1.08998 * 109.47143 * 60.00574 * 15 14 13
48 48 H 1.09003 * 109.47198 * 299.99409 * 16 15 14
49 49 H 1.08998 * 109.47574 * 60.00337 * 16 15 14
50 50 H 0.96996 * 119.99920 * 0.02562 * 17 16 15
51 51 H 0.96999 * 119.99430 * 179.97438 * 21 20 18
52 52 H 1.09003 * 109.64201 * 52.25101 * 26 6 5
53 53 H 1.09005 * 109.64469 * 172.87756 * 26 6 5
54 54 H 1.09009 * 109.35577 * 283.07389 * 27 2 1
55 55 H 1.08994 * 109.36231 * 42.79324 * 27 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.1140 1.1432 0.0000
4 6 1.2696 2.3915 0.0103
5 6 3.6061 1.3030 -0.0101
6 6 4.2793 -0.0075 0.4031
7 6 5.7833 0.0804 0.1363
8 6 4.0389 -0.2601 1.8692
9 8 3.4909 0.5825 2.5479
10 7 4.4330 -1.4224 2.4262
11 6 4.1998 -1.6678 3.8516
12 6 4.7376 -3.0505 4.2257
13 8 6.1576 -3.0684 4.0664
14 6 6.7632 -4.3209 4.3922
15 6 8.2761 -4.2250 4.1854
16 6 8.9245 -5.5664 4.5336
17 7 10.3733 -5.4743 4.3361
18 6 11.1689 -6.5602 4.5871
19 1 10.7283 -7.4846 4.9302
20 6 12.5415 -6.4732 4.3996
21 7 13.0784 -5.3466 3.9809
22 14 13.6267 -7.9547 4.7413
23 1 13.2158 -9.0817 3.8659
24 1 15.0434 -7.6045 4.4661
25 1 13.4838 -8.3554 6.1640
26 6 3.6703 -1.1474 -0.4231
27 6 2.2106 -1.3255 -0.0006
28 1 -0.3634 1.0237 -0.0900
29 1 -0.3634 -0.5897 -0.8416
30 1 -0.3634 -0.4338 0.9315
31 1 1.9173 3.2682 0.0181
32 1 0.6409 2.4122 -0.8797
33 1 0.6402 2.3970 0.9001
34 1 3.8898 2.0908 0.6878
35 1 3.9314 1.5754 -1.0141
36 1 6.2589 -0.8570 0.4246
37 1 5.9540 0.2632 -0.9247
38 1 6.2084 0.8977 0.7187
39 1 4.8716 -2.0963 1.8835
40 1 3.1301 -1.6266 4.0571
41 1 4.7124 -0.9067 4.4399
42 1 4.2896 -3.8025 3.5762
43 1 4.4856 -3.2697 5.2633
44 1 6.5533 -4.5663 5.4332
45 1 6.3573 -5.0997 3.7464
46 1 8.4857 -3.9800 3.1441
47 1 8.6824 -3.4463 4.8308
48 1 8.7150 -5.8118 5.5747
49 1 8.5183 -6.3449 3.8878
50 1 10.7690 -4.6439 4.0284
51 1 14.0376 -5.2857 3.8503
52 1 3.7166 -0.8970 -1.4830
53 1 4.2209 -2.0696 -0.2371
54 1 2.1745 -1.7542 1.0010
55 1 1.7135 -1.9982 -0.6995
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001277608816.mol2 55
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:23:18
Heat of formation + Delta-G solvation = -106.669651 kcal
Electronic energy + Delta-G solvation = -29659.136453 eV
Core-core repulsion = 25694.693224 eV
Total energy + Delta-G solvation = -3964.443229 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 338.236 amu
Computer time = 1.24 seconds
Orbital eigenvalues (eV)
-41.83655 -39.44062 -38.77789 -37.03041 -35.90444 -35.49198 -34.09112 -32.83507
-31.73802 -30.26881 -29.62030 -27.80760 -26.80643 -25.63686 -24.63487 -24.21124
-23.63660 -22.92024 -22.29432 -20.53142 -19.14453 -18.51935 -17.81108 -17.55109
-16.97969 -16.73072 -16.62223 -16.16003 -15.86094 -15.73171 -15.58458 -15.33764
-15.22538 -15.07982 -14.92696 -14.58208 -14.38450 -13.89557 -13.72711 -13.43855
-13.35220 -13.22460 -13.15560 -13.11263 -12.92471 -12.82547 -12.74972 -12.61722
-12.57045 -12.43109 -12.39356 -12.20365 -12.09161 -12.01078 -11.93305 -11.74820
-11.33746 -11.01055 -10.93254 -10.69638 -10.50418 -10.07122 -9.31449 -9.02382
-7.95785 -5.25940 1.36593 1.47924 1.51607 1.57839 1.71630 2.23769
2.50786 2.66325 3.37741 3.52827 3.65015 3.71182 3.84673 4.04017
4.08247 4.08789 4.11805 4.19564 4.29649 4.36303 4.37589 4.42059
4.49157 4.51206 4.54220 4.62003 4.62665 4.73329 4.73845 4.76480
4.79547 4.80682 4.82185 4.87312 4.87775 4.90896 4.95360 4.99861
5.11840 5.13687 5.17646 5.22694 5.27920 5.29417 5.32726 5.33967
5.47173 5.48650 5.82132 6.23050 6.23739 6.27612 6.57522 7.29522
7.31955 8.07571 8.30329 9.27762
Molecular weight = 338.24amu
Principal moments of inertia in cm(-1)
A = 0.021707 B = 0.001696 C = 0.001648
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1289.610335 B =16509.888563 C =16990.149156
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.125 4.125
2 C -0.150 4.150
3 C -0.127 4.127
4 C -0.114 4.114
5 C -0.059 4.059
6 C -0.077 4.077
7 C -0.140 4.140
8 C 0.525 3.475
9 O -0.578 6.578
10 N -0.717 5.717
11 C 0.125 3.875
12 C 0.051 3.949
13 O -0.405 6.405
14 C 0.078 3.922
15 C -0.113 4.113
16 C 0.155 3.845
17 N -0.750 5.750
18 C -0.251 4.251
19 H 0.079 0.921
20 C -0.078 4.078
21 N -0.971 5.971
22 Si 0.978 3.022
23 H -0.275 1.275
24 H -0.295 1.295
25 H -0.277 1.277
26 C -0.104 4.104
27 C -0.084 4.084
28 H 0.071 0.929
29 H 0.071 0.929
30 H 0.055 0.945
31 H 0.057 0.943
32 H 0.076 0.924
33 H 0.056 0.944
34 H 0.061 0.939
35 H 0.095 0.905
36 H 0.067 0.933
37 H 0.088 0.912
38 H 0.049 0.951
39 H 0.411 0.589
40 H 0.087 0.913
41 H 0.054 0.946
42 H 0.076 0.924
43 H 0.080 0.920
44 H 0.060 0.940
45 H 0.068 0.932
46 H 0.062 0.938
47 H 0.055 0.945
48 H 0.024 0.976
49 H 0.029 0.971
50 H 0.373 0.627
51 H 0.252 0.748
52 H 0.090 0.910
53 H 0.085 0.915
54 H 0.059 0.941
55 H 0.087 0.913
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -28.661 10.628 -10.691 32.384
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.181 4.181
2 C -0.150 4.150
3 C -0.127 4.127
4 C -0.171 4.171
5 C -0.096 4.096
6 C -0.080 4.080
7 C -0.198 4.198
8 C 0.313 3.687
9 O -0.457 6.457
10 N -0.369 5.369
11 C 0.001 3.999
12 C -0.025 4.025
13 O -0.326 6.326
14 C 0.001 3.999
15 C -0.151 4.151
16 C 0.028 3.972
17 N -0.393 5.393
18 C -0.383 4.383
19 H 0.097 0.903
20 C -0.270 4.270
21 N -0.621 5.621
22 Si 0.807 3.193
23 H -0.201 1.201
24 H -0.221 1.221
25 H -0.203 1.203
26 C -0.141 4.141
27 C -0.121 4.121
28 H 0.090 0.910
29 H 0.090 0.910
30 H 0.074 0.926
31 H 0.076 0.924
32 H 0.095 0.905
33 H 0.075 0.925
34 H 0.079 0.921
35 H 0.113 0.887
36 H 0.086 0.914
37 H 0.107 0.893
38 H 0.068 0.932
39 H 0.247 0.753
40 H 0.105 0.895
41 H 0.072 0.928
42 H 0.094 0.906
43 H 0.098 0.902
44 H 0.079 0.921
45 H 0.086 0.914
46 H 0.081 0.919
47 H 0.074 0.926
48 H 0.042 0.958
49 H 0.047 0.953
50 H 0.205 0.795
51 H 0.061 0.939
52 H 0.109 0.891
53 H 0.103 0.897
54 H 0.078 0.922
55 H 0.106 0.894
Dipole moment (debyes) X Y Z Total
from point charges -28.938 11.195 -10.185 32.657
hybrid contribution 1.131 -0.620 0.327 1.331
sum -27.807 10.576 -9.858 31.341
Atomic orbital electron populations
1.21047 0.92127 1.03178 1.01776 1.20786 0.96367 0.94576 1.03304
1.20738 0.95305 0.95233 1.01379 1.20893 0.99087 0.95353 1.01724
1.20302 0.91851 0.95607 1.01844 1.20921 0.98087 0.98408 0.90585
1.21854 0.91500 1.02675 1.03735 1.20836 0.76637 0.80950 0.90315
1.90659 1.44113 1.46045 1.64929 1.45924 1.61287 1.19087 1.10648
1.21343 1.00608 0.96174 0.81773 1.22840 0.80970 0.96410 1.02301
1.87886 1.20692 1.34642 1.89331 1.22312 0.91777 0.85514 1.00283
1.21473 0.94427 0.97259 1.01967 1.20678 0.83347 0.95407 0.97743
1.42594 1.02501 1.13097 1.81072 1.19650 0.89468 0.92653 1.36489
0.90319 1.25656 0.98302 1.00214 1.02831 1.69830 1.10935 1.27119
1.54241 0.85144 0.77312 0.78689 0.78193 1.20110 1.22145 1.20287
1.21727 0.95013 0.97017 1.00349 1.20404 0.95180 0.94982 1.01544
0.91029 0.90994 0.92591 0.92395 0.90495 0.92526 0.92063 0.88659
0.91418 0.89296 0.93187 0.75270 0.89503 0.92753 0.90567 0.90174
0.92139 0.91422 0.91941 0.92648 0.95789 0.95336 0.79538 0.93937
0.89141 0.89664 0.92216 0.89412
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -1.72 9.65 71.23 0.69 -1.03 16
2 C -0.15 -2.50 5.65 -15.09 -0.09 -2.58 16
3 C -0.13 -2.26 5.11 -15.09 -0.08 -2.33 16
4 C -0.11 -1.76 8.34 71.24 0.59 -1.17 16
5 C -0.06 -1.02 4.11 29.66 0.12 -0.90 16
6 C -0.08 -1.26 0.66 -52.79 -0.03 -1.29 16
7 C -0.14 -2.05 8.46 71.98 0.61 -1.44 16
8 C 0.53 11.55 4.73 87.66 0.41 11.96 16
9 O -0.58 -17.32 15.32 -3.03 -0.05 -17.36 16
10 N -0.72 -13.21 5.26 -463.05 -2.44 -15.64 16
11 C 0.12 2.29 6.06 86.38 0.52 2.82 16
12 C 0.05 0.81 6.07 71.98 0.44 1.24 16
13 O -0.41 -9.32 10.29 -148.98 -1.53 -10.85 16
14 C 0.08 1.81 5.94 71.98 0.43 2.24 16
15 C -0.11 -3.61 5.70 30.60 0.17 -3.44 16
16 C 0.15 6.04 6.26 86.38 0.54 6.58 16
17 N -0.75 -38.78 5.60 -343.43 -1.92 -40.70 16
18 C -0.25 -14.14 9.99 84.03 0.84 -13.30 16
19 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16
20 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16
21 N -0.97 -60.05 13.06 21.65 0.28 -59.76 16
22 Si 0.98 45.99 29.55 68.60 2.03 48.02 16
23 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16
24 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16
25 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16
26 C -0.10 -1.25 4.72 30.73 0.15 -1.10 16
27 C -0.08 -1.17 5.29 29.65 0.16 -1.01 16
28 H 0.07 0.91 5.20 -2.38 -0.01 0.90 16
29 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16
30 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16
31 H 0.06 0.86 7.93 -2.38 -0.02 0.84 16
32 H 0.08 0.93 7.43 -2.39 -0.02 0.91 16
33 H 0.06 0.95 7.61 -2.39 -0.02 0.93 16
34 H 0.06 1.31 7.67 -2.39 -0.02 1.29 16
35 H 0.10 1.27 8.11 -2.39 -0.02 1.25 16
36 H 0.07 0.97 8.01 -2.39 -0.02 0.95 16
37 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16
38 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16
39 H 0.41 6.23 7.63 -92.71 -0.71 5.52 16
40 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16
41 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16
42 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16
43 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16
44 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16
45 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16
46 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16
47 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16
48 H 0.02 0.92 8.14 -2.39 -0.02 0.91 16
49 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16
50 H 0.37 20.63 7.67 -92.71 -0.71 19.92 16
51 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16
52 H 0.09 0.90 8.12 -2.39 -0.02 0.88 16
53 H 0.08 0.81 7.57 -2.38 -0.02 0.79 16
54 H 0.06 0.96 7.34 -2.38 -0.02 0.94 16
55 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16
Total: -1.00 -72.59 431.18 1.75 -70.84
By element:
Atomic # 1 Polarization: 34.84 SS G_CDS: -0.56 Total: 34.28 kcal
Atomic # 6 Polarization: -14.75 SS G_CDS: 5.94 Total: -8.81 kcal
Atomic # 7 Polarization: -112.03 SS G_CDS: -4.08 Total: -116.11 kcal
Atomic # 8 Polarization: -26.64 SS G_CDS: -1.58 Total: -28.21 kcal
Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal
Total: -72.59 1.75 -70.84 kcal
The number of atoms in the molecule is 55
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001277608816.mol2 55
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -35.834 kcal
(2) G-P(sol) polarization free energy of solvation -72.588 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.422 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.752 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.835 kcal
(6) G-S(sol) free energy of system = (1) + (5) -106.670 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.24 seconds