Wall clock time and date at job start Tue Mar 31 2020 21:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.29438 * 117.96688 * 2 1 4 4 C 1.50706 * 117.95816 * 0.44353 * 3 2 1 5 5 C 1.50068 * 124.07923 * 180.46684 * 3 2 1 6 6 C 1.53016 * 110.14619 * 342.87231 * 5 3 2 7 7 C 1.53007 * 109.64324 * 169.33284 * 6 5 3 8 8 C 1.50703 * 109.64062 * 289.74820 * 6 5 3 9 9 O 1.21280 * 120.00231 * 353.74034 * 8 6 5 10 10 N 1.34777 * 119.99760 * 173.73658 * 8 6 5 11 11 C 1.46500 * 119.99744 * 179.97438 * 10 8 6 12 12 C 1.53003 * 109.46947 * 179.97438 * 11 10 8 13 13 O 1.42903 * 109.47117 * 65.00464 * 12 11 10 14 14 C 1.42894 * 114.00026 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.46968 * 179.97438 * 14 13 12 16 16 C 1.53004 * 109.46920 * 180.02562 * 15 14 13 17 17 N 1.46507 * 109.46966 * 180.02562 * 16 15 14 18 18 C 1.36935 * 120.00045 * 179.97438 * 17 16 15 19 19 H 1.08002 * 119.99724 * 0.02562 * 18 17 16 20 20 C 1.38808 * 120.00335 * 179.97438 * 18 17 16 21 21 N 1.31629 * 119.99524 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00412 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47059 * 60.00050 * 22 20 18 24 24 H 1.48503 * 109.47029 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47034 * 300.00097 * 22 20 18 26 26 C 1.53393 * 108.44107 * 49.43246 * 6 5 3 27 27 C 1.50070 * 117.96011 * 180.02562 * 2 1 3 28 28 H 1.09004 * 109.47218 * 5.02684 * 1 2 3 29 29 H 1.09003 * 109.47232 * 125.01881 * 1 2 3 30 30 H 1.08991 * 109.47604 * 245.02726 * 1 2 3 31 31 H 1.09006 * 109.47115 * 179.49640 * 4 3 2 32 32 H 1.08987 * 109.47326 * 299.49810 * 4 3 2 33 33 H 1.08994 * 109.46909 * 59.50035 * 4 3 2 34 34 H 1.09001 * 109.35975 * 222.66123 * 5 3 2 35 35 H 1.08999 * 109.24667 * 103.00692 * 5 3 2 36 36 H 1.09002 * 109.47009 * 180.42088 * 7 6 5 37 37 H 1.08998 * 109.46887 * 300.41823 * 7 6 5 38 38 H 1.08992 * 109.46841 * 60.41851 * 7 6 5 39 39 H 0.97001 * 120.00618 * 0.02562 * 10 8 6 40 40 H 1.09001 * 109.46991 * 60.00721 * 11 10 8 41 41 H 1.08997 * 109.47225 * 300.00394 * 11 10 8 42 42 H 1.08998 * 109.47377 * 305.00230 * 12 11 10 43 43 H 1.09006 * 109.46904 * 184.99833 * 12 11 10 44 44 H 1.08999 * 109.47745 * 299.99863 * 14 13 12 45 45 H 1.09008 * 109.47161 * 60.00356 * 14 13 12 46 46 H 1.09002 * 109.47133 * 299.99824 * 15 14 13 47 47 H 1.08998 * 109.47143 * 60.00574 * 15 14 13 48 48 H 1.09003 * 109.47198 * 299.99409 * 16 15 14 49 49 H 1.08998 * 109.47574 * 60.00337 * 16 15 14 50 50 H 0.96996 * 119.99920 * 0.02562 * 17 16 15 51 51 H 0.96999 * 119.99430 * 179.97438 * 21 20 18 52 52 H 1.09003 * 109.64201 * 52.25101 * 26 6 5 53 53 H 1.09005 * 109.64469 * 172.87756 * 26 6 5 54 54 H 1.09009 * 109.35577 * 283.07389 * 27 2 1 55 55 H 1.08994 * 109.36231 * 42.79324 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1140 1.1432 0.0000 4 6 1.2696 2.3915 0.0103 5 6 3.6061 1.3030 -0.0101 6 6 4.2793 -0.0075 0.4031 7 6 5.7833 0.0804 0.1363 8 6 4.0389 -0.2601 1.8692 9 8 3.4909 0.5825 2.5479 10 7 4.4330 -1.4224 2.4262 11 6 4.1998 -1.6678 3.8516 12 6 4.7376 -3.0505 4.2257 13 8 6.1576 -3.0684 4.0664 14 6 6.7632 -4.3209 4.3922 15 6 8.2761 -4.2250 4.1854 16 6 8.9245 -5.5664 4.5336 17 7 10.3733 -5.4743 4.3361 18 6 11.1689 -6.5602 4.5871 19 1 10.7283 -7.4846 4.9302 20 6 12.5415 -6.4732 4.3996 21 7 13.0784 -5.3466 3.9809 22 14 13.6267 -7.9547 4.7413 23 1 13.2158 -9.0817 3.8659 24 1 15.0434 -7.6045 4.4661 25 1 13.4838 -8.3554 6.1640 26 6 3.6703 -1.1474 -0.4231 27 6 2.2106 -1.3255 -0.0006 28 1 -0.3634 1.0237 -0.0900 29 1 -0.3634 -0.5897 -0.8416 30 1 -0.3634 -0.4338 0.9315 31 1 1.9173 3.2682 0.0181 32 1 0.6409 2.4122 -0.8797 33 1 0.6402 2.3970 0.9001 34 1 3.8898 2.0908 0.6878 35 1 3.9314 1.5754 -1.0141 36 1 6.2589 -0.8570 0.4246 37 1 5.9540 0.2632 -0.9247 38 1 6.2084 0.8977 0.7187 39 1 4.8716 -2.0963 1.8835 40 1 3.1301 -1.6266 4.0571 41 1 4.7124 -0.9067 4.4399 42 1 4.2896 -3.8025 3.5762 43 1 4.4856 -3.2697 5.2633 44 1 6.5533 -4.5663 5.4332 45 1 6.3573 -5.0997 3.7464 46 1 8.4857 -3.9800 3.1441 47 1 8.6824 -3.4463 4.8308 48 1 8.7150 -5.8118 5.5747 49 1 8.5183 -6.3449 3.8878 50 1 10.7690 -4.6439 4.0284 51 1 14.0376 -5.2857 3.8503 52 1 3.7166 -0.8970 -1.4830 53 1 4.2209 -2.0696 -0.2371 54 1 2.1745 -1.7542 1.0010 55 1 1.7135 -1.9982 -0.6995 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277608816.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:18 Heat of formation + Delta-G solvation = -106.669651 kcal Electronic energy + Delta-G solvation = -29659.136453 eV Core-core repulsion = 25694.693224 eV Total energy + Delta-G solvation = -3964.443229 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.83655 -39.44062 -38.77789 -37.03041 -35.90444 -35.49198 -34.09112 -32.83507 -31.73802 -30.26881 -29.62030 -27.80760 -26.80643 -25.63686 -24.63487 -24.21124 -23.63660 -22.92024 -22.29432 -20.53142 -19.14453 -18.51935 -17.81108 -17.55109 -16.97969 -16.73072 -16.62223 -16.16003 -15.86094 -15.73171 -15.58458 -15.33764 -15.22538 -15.07982 -14.92696 -14.58208 -14.38450 -13.89557 -13.72711 -13.43855 -13.35220 -13.22460 -13.15560 -13.11263 -12.92471 -12.82547 -12.74972 -12.61722 -12.57045 -12.43109 -12.39356 -12.20365 -12.09161 -12.01078 -11.93305 -11.74820 -11.33746 -11.01055 -10.93254 -10.69638 -10.50418 -10.07122 -9.31449 -9.02382 -7.95785 -5.25940 1.36593 1.47924 1.51607 1.57839 1.71630 2.23769 2.50786 2.66325 3.37741 3.52827 3.65015 3.71182 3.84673 4.04017 4.08247 4.08789 4.11805 4.19564 4.29649 4.36303 4.37589 4.42059 4.49157 4.51206 4.54220 4.62003 4.62665 4.73329 4.73845 4.76480 4.79547 4.80682 4.82185 4.87312 4.87775 4.90896 4.95360 4.99861 5.11840 5.13687 5.17646 5.22694 5.27920 5.29417 5.32726 5.33967 5.47173 5.48650 5.82132 6.23050 6.23739 6.27612 6.57522 7.29522 7.31955 8.07571 8.30329 9.27762 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.021707 B = 0.001696 C = 0.001648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.610335 B =16509.888563 C =16990.149156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.150 4.150 3 C -0.127 4.127 4 C -0.114 4.114 5 C -0.059 4.059 6 C -0.077 4.077 7 C -0.140 4.140 8 C 0.525 3.475 9 O -0.578 6.578 10 N -0.717 5.717 11 C 0.125 3.875 12 C 0.051 3.949 13 O -0.405 6.405 14 C 0.078 3.922 15 C -0.113 4.113 16 C 0.155 3.845 17 N -0.750 5.750 18 C -0.251 4.251 19 H 0.079 0.921 20 C -0.078 4.078 21 N -0.971 5.971 22 Si 0.978 3.022 23 H -0.275 1.275 24 H -0.295 1.295 25 H -0.277 1.277 26 C -0.104 4.104 27 C -0.084 4.084 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.095 0.905 36 H 0.067 0.933 37 H 0.088 0.912 38 H 0.049 0.951 39 H 0.411 0.589 40 H 0.087 0.913 41 H 0.054 0.946 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.060 0.940 45 H 0.068 0.932 46 H 0.062 0.938 47 H 0.055 0.945 48 H 0.024 0.976 49 H 0.029 0.971 50 H 0.373 0.627 51 H 0.252 0.748 52 H 0.090 0.910 53 H 0.085 0.915 54 H 0.059 0.941 55 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.661 10.628 -10.691 32.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.150 4.150 3 C -0.127 4.127 4 C -0.171 4.171 5 C -0.096 4.096 6 C -0.080 4.080 7 C -0.198 4.198 8 C 0.313 3.687 9 O -0.457 6.457 10 N -0.369 5.369 11 C 0.001 3.999 12 C -0.025 4.025 13 O -0.326 6.326 14 C 0.001 3.999 15 C -0.151 4.151 16 C 0.028 3.972 17 N -0.393 5.393 18 C -0.383 4.383 19 H 0.097 0.903 20 C -0.270 4.270 21 N -0.621 5.621 22 Si 0.807 3.193 23 H -0.201 1.201 24 H -0.221 1.221 25 H -0.203 1.203 26 C -0.141 4.141 27 C -0.121 4.121 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.113 0.887 36 H 0.086 0.914 37 H 0.107 0.893 38 H 0.068 0.932 39 H 0.247 0.753 40 H 0.105 0.895 41 H 0.072 0.928 42 H 0.094 0.906 43 H 0.098 0.902 44 H 0.079 0.921 45 H 0.086 0.914 46 H 0.081 0.919 47 H 0.074 0.926 48 H 0.042 0.958 49 H 0.047 0.953 50 H 0.205 0.795 51 H 0.061 0.939 52 H 0.109 0.891 53 H 0.103 0.897 54 H 0.078 0.922 55 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -28.938 11.195 -10.185 32.657 hybrid contribution 1.131 -0.620 0.327 1.331 sum -27.807 10.576 -9.858 31.341 Atomic orbital electron populations 1.21047 0.92127 1.03178 1.01776 1.20786 0.96367 0.94576 1.03304 1.20738 0.95305 0.95233 1.01379 1.20893 0.99087 0.95353 1.01724 1.20302 0.91851 0.95607 1.01844 1.20921 0.98087 0.98408 0.90585 1.21854 0.91500 1.02675 1.03735 1.20836 0.76637 0.80950 0.90315 1.90659 1.44113 1.46045 1.64929 1.45924 1.61287 1.19087 1.10648 1.21343 1.00608 0.96174 0.81773 1.22840 0.80970 0.96410 1.02301 1.87886 1.20692 1.34642 1.89331 1.22312 0.91777 0.85514 1.00283 1.21473 0.94427 0.97259 1.01967 1.20678 0.83347 0.95407 0.97743 1.42594 1.02501 1.13097 1.81072 1.19650 0.89468 0.92653 1.36489 0.90319 1.25656 0.98302 1.00214 1.02831 1.69830 1.10935 1.27119 1.54241 0.85144 0.77312 0.78689 0.78193 1.20110 1.22145 1.20287 1.21727 0.95013 0.97017 1.00349 1.20404 0.95180 0.94982 1.01544 0.91029 0.90994 0.92591 0.92395 0.90495 0.92526 0.92063 0.88659 0.91418 0.89296 0.93187 0.75270 0.89503 0.92753 0.90567 0.90174 0.92139 0.91422 0.91941 0.92648 0.95789 0.95336 0.79538 0.93937 0.89141 0.89664 0.92216 0.89412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.72 9.65 71.23 0.69 -1.03 16 2 C -0.15 -2.50 5.65 -15.09 -0.09 -2.58 16 3 C -0.13 -2.26 5.11 -15.09 -0.08 -2.33 16 4 C -0.11 -1.76 8.34 71.24 0.59 -1.17 16 5 C -0.06 -1.02 4.11 29.66 0.12 -0.90 16 6 C -0.08 -1.26 0.66 -52.79 -0.03 -1.29 16 7 C -0.14 -2.05 8.46 71.98 0.61 -1.44 16 8 C 0.53 11.55 4.73 87.66 0.41 11.96 16 9 O -0.58 -17.32 15.32 -3.03 -0.05 -17.36 16 10 N -0.72 -13.21 5.26 -463.05 -2.44 -15.64 16 11 C 0.12 2.29 6.06 86.38 0.52 2.82 16 12 C 0.05 0.81 6.07 71.98 0.44 1.24 16 13 O -0.41 -9.32 10.29 -148.98 -1.53 -10.85 16 14 C 0.08 1.81 5.94 71.98 0.43 2.24 16 15 C -0.11 -3.61 5.70 30.60 0.17 -3.44 16 16 C 0.15 6.04 6.26 86.38 0.54 6.58 16 17 N -0.75 -38.78 5.60 -343.43 -1.92 -40.70 16 18 C -0.25 -14.14 9.99 84.03 0.84 -13.30 16 19 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 20 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 21 N -0.97 -60.05 13.06 21.65 0.28 -59.76 16 22 Si 0.98 45.99 29.55 68.60 2.03 48.02 16 23 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 24 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 25 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 26 C -0.10 -1.25 4.72 30.73 0.15 -1.10 16 27 C -0.08 -1.17 5.29 29.65 0.16 -1.01 16 28 H 0.07 0.91 5.20 -2.38 -0.01 0.90 16 29 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 0.86 7.93 -2.38 -0.02 0.84 16 32 H 0.08 0.93 7.43 -2.39 -0.02 0.91 16 33 H 0.06 0.95 7.61 -2.39 -0.02 0.93 16 34 H 0.06 1.31 7.67 -2.39 -0.02 1.29 16 35 H 0.10 1.27 8.11 -2.39 -0.02 1.25 16 36 H 0.07 0.97 8.01 -2.39 -0.02 0.95 16 37 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.41 6.23 7.63 -92.71 -0.71 5.52 16 40 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 44 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 46 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 47 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 48 H 0.02 0.92 8.14 -2.39 -0.02 0.91 16 49 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 50 H 0.37 20.63 7.67 -92.71 -0.71 19.92 16 51 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 52 H 0.09 0.90 8.12 -2.39 -0.02 0.88 16 53 H 0.08 0.81 7.57 -2.38 -0.02 0.79 16 54 H 0.06 0.96 7.34 -2.38 -0.02 0.94 16 55 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -72.59 431.18 1.75 -70.84 By element: Atomic # 1 Polarization: 34.84 SS G_CDS: -0.56 Total: 34.28 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: 5.94 Total: -8.81 kcal Atomic # 7 Polarization: -112.03 SS G_CDS: -4.08 Total: -116.11 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: -1.58 Total: -28.21 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -72.59 1.75 -70.84 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277608816.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.834 kcal (2) G-P(sol) polarization free energy of solvation -72.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds