Wall clock time and date at job start Tue Mar 31 2020 22:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 110.43324 * 2 1 4 4 C 1.54099 * 110.48642 * 122.54377 * 2 1 3 5 5 O 1.43740 * 107.29321 * 120.70924 * 4 2 1 6 6 C 1.44379 * 106.97643 * 333.48413 * 5 4 2 7 7 H 1.08998 * 110.61606 * 281.40687 * 6 5 4 8 8 C 1.53000 * 110.62257 * 158.55899 * 6 5 4 9 9 C 1.52998 * 109.46724 * 68.58192 * 8 6 5 10 10 C 1.50701 * 109.47348 * 180.02562 * 9 8 6 11 11 O 1.21286 * 119.99737 * 359.97438 * 10 9 8 12 12 N 1.34774 * 120.00303 * 180.02562 * 10 9 8 13 13 C 1.46501 * 119.99852 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.46273 * 59.99767 * 13 12 10 15 15 C 1.53042 * 109.45998 * 300.02373 * 13 12 10 16 16 C 1.53167 * 109.32510 * 301.35805 * 15 13 12 17 17 N 1.46923 * 108.77305 * 305.35715 * 16 15 13 18 18 C 1.36934 * 120.63097 * 233.63058 * 17 16 15 19 19 H 1.08009 * 119.99670 * 151.80604 * 18 17 16 20 20 C 1.38803 * 120.00244 * 331.80922 * 18 17 16 21 21 N 1.31618 * 119.99933 * 343.08369 * 20 18 17 22 22 Si 1.86799 * 120.00273 * 163.08118 * 20 18 17 23 23 H 1.48505 * 109.47302 * 90.00096 * 22 20 18 24 24 H 1.48495 * 109.47525 * 209.99859 * 22 20 18 25 25 H 1.48501 * 109.47329 * 330.00236 * 22 20 18 26 26 C 1.46931 * 118.73736 * 53.60581 * 17 16 15 27 27 C 1.53040 * 109.45700 * 179.97438 * 13 12 10 28 28 C 1.54984 * 110.34051 * 237.30464 * 2 1 3 29 29 H 1.09003 * 109.47128 * 298.90814 * 1 2 3 30 30 H 1.09003 * 109.47450 * 58.90962 * 1 2 3 31 31 H 1.09001 * 109.47304 * 178.91279 * 1 2 3 32 32 H 1.08997 * 109.47122 * 181.09547 * 3 2 1 33 33 H 1.09004 * 109.47030 * 301.09209 * 3 2 1 34 34 H 1.09003 * 109.47253 * 61.09144 * 3 2 1 35 35 H 1.08996 * 109.88124 * 1.28133 * 4 2 1 36 36 H 1.09002 * 110.00321 * 240.20150 * 4 2 1 37 37 H 1.08995 * 109.47136 * 308.58606 * 8 6 5 38 38 H 1.08993 * 109.47292 * 188.57876 * 8 6 5 39 39 H 1.09002 * 109.47486 * 300.00119 * 9 8 6 40 40 H 1.09000 * 109.47565 * 59.99925 * 9 8 6 41 41 H 0.96996 * 119.99950 * 359.97438 * 12 10 9 42 42 H 1.09002 * 109.46920 * 59.99714 * 14 13 12 43 43 H 1.09003 * 109.47370 * 179.97438 * 14 13 12 44 44 H 1.09002 * 109.46756 * 299.99740 * 14 13 12 45 45 H 1.08993 * 109.49695 * 61.29664 * 15 13 12 46 46 H 1.08997 * 109.49836 * 181.39892 * 15 13 12 47 47 H 1.09006 * 109.59076 * 185.57124 * 16 15 13 48 48 H 1.09006 * 109.70536 * 65.21410 * 16 15 13 49 49 H 0.97000 * 119.99957 * 180.02562 * 21 20 18 50 50 H 1.08997 * 109.58373 * 186.60514 * 26 17 16 51 51 H 1.08998 * 109.58315 * 66.18509 * 26 17 16 52 52 H 1.09002 * 109.50073 * 178.60569 * 27 13 12 53 53 H 1.09004 * 109.50058 * 298.66749 * 27 13 12 54 54 H 1.09004 * 110.83572 * 143.89914 * 28 2 1 55 55 H 1.08999 * 111.05029 * 20.24227 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0642 1.4338 0.0000 4 6 2.0693 -0.7765 1.2169 5 8 2.8754 -1.8546 0.7127 6 6 2.3781 -2.1723 -0.6049 7 1 1.4714 -2.7736 -0.5383 8 6 3.4466 -2.9003 -1.4231 9 6 3.6807 -4.2922 -0.8324 10 6 4.7335 -5.0091 -1.6378 11 8 5.2458 -4.4610 -2.5907 12 7 5.1050 -6.2598 -1.2998 13 6 6.1281 -6.9569 -2.0831 14 6 7.4332 -6.1594 -2.0417 15 6 5.6575 -7.0895 -3.5333 16 6 4.3332 -7.8584 -3.5681 17 7 4.5122 -9.1400 -2.8724 18 6 4.1882 -10.3194 -3.4883 19 1 4.7036 -11.2292 -3.2179 20 6 3.1976 -10.3456 -4.4602 21 7 2.3487 -9.3449 -4.5619 22 14 3.0692 -11.8010 -5.6241 23 1 2.1721 -12.8278 -5.0356 24 1 2.5155 -11.3472 -6.9251 25 1 4.4178 -12.3853 -5.8368 26 6 5.0459 -9.1323 -1.5035 27 6 6.3622 -8.3490 -1.4919 28 6 2.0687 -0.7850 -1.2229 29 1 -0.3633 0.4968 0.8996 30 1 -0.3634 0.5307 -0.8801 31 1 -0.3634 -1.0275 -0.0195 32 1 3.1538 1.4155 -0.0196 33 1 1.6937 1.9595 -0.8801 34 1 1.7255 1.9477 0.8996 35 1 1.2391 -1.1756 1.7996 36 1 2.6767 -0.1193 1.8393 37 1 4.3763 -2.3322 -1.3939 38 1 3.1112 -2.9957 -2.4557 39 1 4.0160 -4.1969 0.2004 40 1 2.7509 -4.8604 -0.8615 41 1 4.6951 -6.6983 -0.5379 42 1 7.7683 -6.0644 -1.0088 43 1 8.1947 -6.6782 -2.6241 44 1 7.2664 -5.1677 -2.4623 45 1 5.5132 -6.0975 -3.9611 46 1 6.4072 -7.6299 -4.1111 47 1 4.0441 -8.0416 -4.6030 48 1 3.5575 -7.2771 -3.0694 49 1 1.6562 -9.3633 -5.2408 50 1 5.2269 -10.1561 -1.1762 51 1 4.3300 -8.6540 -0.8350 52 1 7.1053 -8.8776 -2.0890 53 1 6.7202 -8.2535 -0.4668 54 1 2.9753 -0.3216 -1.6123 55 1 1.3099 -0.8663 -2.0012 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278087759.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:31 Heat of formation + Delta-G solvation = -102.204143 kcal Electronic energy + Delta-G solvation = -31048.762889 eV Core-core repulsion = 27084.513300 eV Total energy + Delta-G solvation = -3964.249590 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.43963 -40.83060 -38.91380 -36.15376 -35.68748 -34.44894 -33.59561 -32.41197 -31.58490 -30.03792 -29.06298 -28.23532 -26.90113 -25.97631 -25.47094 -23.91955 -22.78602 -22.06244 -21.38878 -20.19832 -20.09500 -18.75774 -18.04752 -17.43174 -16.84997 -16.54659 -16.44751 -16.10688 -15.86640 -15.65110 -15.22385 -15.02263 -14.90990 -14.74540 -14.53138 -14.49383 -14.30105 -14.05649 -13.79026 -13.66829 -13.25425 -13.19256 -12.99543 -12.91079 -12.80515 -12.65471 -12.55097 -12.54538 -12.39276 -12.24747 -12.21238 -12.01861 -11.95941 -11.74895 -11.59383 -11.55387 -11.38708 -11.28339 -11.25775 -10.53309 -10.52304 -10.36813 -9.87209 -8.64693 -7.86251 -5.31298 1.44801 1.47263 1.56250 1.81855 2.36859 2.51397 2.93096 3.28748 3.46402 3.67205 3.72281 3.79160 3.89139 3.97613 3.99728 4.09180 4.13679 4.17009 4.30993 4.36486 4.45603 4.50396 4.56764 4.69168 4.71318 4.73653 4.75022 4.77636 4.79601 4.82045 4.86614 4.88833 4.97305 4.98937 5.01852 5.06350 5.06792 5.13107 5.15698 5.22333 5.24343 5.28349 5.31330 5.35768 5.39601 5.42563 5.51478 5.64380 5.71868 5.82786 6.00887 6.39721 6.76167 7.15731 7.44516 7.88262 8.39864 9.19490 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015239 B = 0.002485 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.891296 B =11266.852610 C =12341.126459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.099 4.099 3 C -0.135 4.135 4 C 0.049 3.951 5 O -0.393 6.393 6 C 0.079 3.921 7 H 0.075 0.925 8 C -0.088 4.088 9 C -0.131 4.131 10 C 0.510 3.490 11 O -0.575 6.575 12 N -0.709 5.709 13 C 0.186 3.814 14 C -0.150 4.150 15 C -0.139 4.139 16 C 0.195 3.805 17 N -0.608 5.608 18 C -0.260 4.260 19 H 0.068 0.932 20 C -0.053 4.053 21 N -0.934 5.934 22 Si 0.964 3.036 23 H -0.283 1.283 24 H -0.296 1.296 25 H -0.271 1.271 26 C 0.140 3.860 27 C -0.124 4.124 28 C -0.142 4.142 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.089 0.911 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.110 0.890 40 H 0.097 0.903 41 H 0.406 0.594 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.055 0.945 45 H 0.058 0.942 46 H 0.051 0.949 47 H 0.040 0.960 48 H -0.005 1.005 49 H 0.247 0.753 50 H 0.058 0.942 51 H 0.024 0.976 52 H 0.071 0.929 53 H 0.095 0.905 54 H 0.074 0.926 55 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.649 18.562 13.378 22.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.099 4.099 3 C -0.192 4.192 4 C -0.027 4.027 5 O -0.313 6.313 6 C 0.022 3.978 7 H 0.093 0.907 8 C -0.126 4.126 9 C -0.171 4.171 10 C 0.298 3.702 11 O -0.456 6.456 12 N -0.361 5.361 13 C 0.100 3.900 14 C -0.208 4.208 15 C -0.179 4.179 16 C 0.069 3.931 17 N -0.331 5.331 18 C -0.390 4.390 19 H 0.086 0.914 20 C -0.248 4.248 21 N -0.580 5.580 22 Si 0.792 3.208 23 H -0.209 1.209 24 H -0.223 1.223 25 H -0.196 1.196 26 C 0.015 3.985 27 C -0.163 4.163 28 C -0.180 4.180 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.107 0.893 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.128 0.872 40 H 0.116 0.884 41 H 0.242 0.758 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.074 0.926 45 H 0.076 0.924 46 H 0.070 0.930 47 H 0.058 0.942 48 H 0.013 0.987 49 H 0.056 0.944 50 H 0.077 0.923 51 H 0.041 0.959 52 H 0.089 0.911 53 H 0.113 0.887 54 H 0.093 0.907 55 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.071 18.829 12.723 22.750 hybrid contribution -0.798 -0.975 -0.830 1.509 sum 0.273 17.854 11.893 21.454 Atomic orbital electron populations 1.21875 0.92600 1.02117 1.02879 1.21982 0.97060 0.96693 0.94186 1.21824 1.00692 0.93876 1.02783 1.23454 0.95049 0.88363 0.95873 1.88850 1.57274 1.53447 1.31685 1.23154 0.96062 0.96025 0.82564 0.90720 1.21247 0.98945 0.93887 0.98502 1.21620 0.98102 0.96495 1.00838 1.21090 0.83055 0.81545 0.84475 1.90594 1.57158 1.67572 1.30254 1.46088 1.41633 1.15258 1.33086 1.20150 0.87694 0.91936 0.90212 1.22101 0.95668 1.00622 1.02378 1.22367 0.99000 0.99579 0.96907 1.20306 0.91850 0.84747 0.96232 1.44283 1.74884 1.02354 1.11626 1.19506 1.13142 0.88601 1.17775 0.91415 1.25792 0.95536 1.00217 1.03294 1.70194 1.17832 1.34332 1.35651 0.85331 0.77871 0.79291 0.78288 1.20922 1.22277 1.19591 1.21072 0.93121 0.98575 0.85733 1.22201 0.98784 0.93553 1.01780 1.23327 1.02075 0.94539 0.98028 0.91290 0.91697 0.92764 0.92870 0.91844 0.91262 0.91740 0.89271 0.91664 0.90917 0.87185 0.88442 0.75780 0.91292 0.91558 0.92625 0.92388 0.93017 0.94200 0.98693 0.94367 0.92306 0.95859 0.91078 0.88696 0.90736 0.89381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 8.25 71.98 0.59 -0.99 16 2 C -0.10 -1.37 0.99 -51.13 -0.05 -1.43 16 3 C -0.13 -1.56 8.28 71.98 0.60 -0.97 16 4 C 0.05 0.79 7.03 72.35 0.51 1.30 16 5 O -0.39 -8.64 10.98 -148.98 -1.64 -10.28 16 6 C 0.08 1.61 3.30 31.28 0.10 1.72 16 7 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 8 C -0.09 -2.15 4.27 30.59 0.13 -2.02 16 9 C -0.13 -3.26 5.63 29.85 0.17 -3.10 16 10 C 0.51 16.36 7.25 87.66 0.64 17.00 16 11 O -0.58 -22.18 12.20 -3.05 -0.04 -22.22 16 12 N -0.71 -21.71 4.10 -422.80 -1.73 -23.44 16 13 C 0.19 6.16 0.66 3.63 0.00 6.16 16 14 C -0.15 -4.39 8.40 71.98 0.60 -3.78 16 15 C -0.14 -5.82 4.67 30.66 0.14 -5.68 16 16 C 0.19 9.79 5.04 86.35 0.44 10.23 16 17 N -0.61 -30.23 2.99 -699.16 -2.09 -32.32 16 18 C -0.26 -14.30 9.58 84.03 0.81 -13.49 16 19 H 0.07 3.60 7.89 -2.91 -0.02 3.58 16 20 C -0.05 -3.01 4.92 84.86 0.42 -2.59 16 21 N -0.93 -56.28 11.20 21.65 0.24 -56.04 16 22 Si 0.96 45.50 29.59 68.60 2.03 47.53 16 23 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 24 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16 25 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 26 C 0.14 5.40 6.24 86.36 0.54 5.94 16 27 C -0.12 -3.82 4.96 30.67 0.15 -3.67 16 28 C -0.14 -2.43 5.71 31.96 0.18 -2.24 16 29 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.06 0.93 7.69 -2.39 -0.02 0.91 16 36 H 0.09 1.26 7.70 -2.39 -0.02 1.25 16 37 H 0.06 1.74 8.10 -2.39 -0.02 1.72 16 38 H 0.07 1.94 8.10 -2.39 -0.02 1.92 16 39 H 0.11 2.40 7.99 -2.39 -0.02 2.38 16 40 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 41 H 0.41 10.80 7.27 -92.71 -0.67 10.12 16 42 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.05 1.87 6.17 -2.39 -0.01 1.85 16 45 H 0.06 2.58 6.20 -2.39 -0.01 2.57 16 46 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 47 H 0.04 2.33 6.06 -2.38 -0.01 2.32 16 48 H 0.00 -0.27 7.74 -2.38 -0.02 -0.29 16 49 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 50 H 0.06 2.21 7.93 -2.39 -0.02 2.19 16 51 H 0.02 0.87 6.94 -2.39 -0.02 0.85 16 52 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 53 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 54 H 0.07 1.35 7.79 -2.38 -0.02 1.33 16 55 H 0.09 1.37 7.86 -2.39 -0.02 1.35 16 Total: -1.00 -69.01 413.14 2.91 -66.10 By element: Atomic # 1 Polarization: 28.11 SS G_CDS: 0.17 Total: 28.28 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: 5.97 Total: 2.39 kcal Atomic # 7 Polarization: -108.22 SS G_CDS: -3.58 Total: -111.81 kcal Atomic # 8 Polarization: -30.82 SS G_CDS: -1.67 Total: -32.49 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -69.01 2.91 -66.10 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278087759.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.100 kcal (2) G-P(sol) polarization free energy of solvation -69.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds