Wall clock time and date at job start Tue Mar 31 2020 22:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 114.00321 * 2 1 4 4 C 1.52998 * 109.47577 * 180.02562 * 3 2 1 5 5 C 1.50710 * 110.43080 * 300.69863 * 4 3 2 6 6 O 1.21274 * 119.99681 * 239.30038 * 5 4 3 7 7 N 1.34769 * 119.99861 * 59.30129 * 5 4 3 8 8 C 1.46497 * 119.99911 * 179.97438 * 7 5 4 9 9 C 1.53007 * 109.47147 * 179.97438 * 8 7 5 10 10 C 1.52994 * 109.46224 * 300.00069 * 9 8 7 11 11 C 1.53045 * 109.44781 * 59.96689 * 9 8 7 12 12 C 1.53188 * 109.31365 * 181.37651 * 11 9 8 13 13 N 1.46925 * 108.77765 * 305.36461 * 12 11 9 14 14 C 1.36935 * 120.63439 * 233.63046 * 13 12 11 15 15 H 1.08000 * 120.00051 * 152.60478 * 14 13 12 16 16 C 1.38811 * 119.99390 * 332.60886 * 14 13 12 17 17 N 1.31624 * 119.99604 * 159.37154 * 16 14 13 18 18 Si 1.86803 * 120.00503 * 339.36502 * 16 14 13 19 19 H 1.48506 * 109.46769 * 92.93028 * 18 16 14 20 20 H 1.48496 * 109.47553 * 212.93015 * 18 16 14 21 21 H 1.48500 * 109.46818 * 332.93400 * 18 16 14 22 22 C 1.46929 * 118.73515 * 53.60534 * 13 12 11 23 23 C 1.53036 * 109.45958 * 180.02562 * 9 8 7 24 24 C 1.54882 * 110.48944 * 63.24078 * 4 3 2 25 25 C 1.55236 * 102.59026 * 156.67952 * 24 4 3 26 26 C 1.54266 * 104.23021 * 322.08181 * 25 24 4 27 27 C 1.53881 * 106.59673 * 23.61559 * 26 25 24 28 28 H 1.09005 * 109.46546 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46740 * 299.99849 * 1 2 3 30 30 H 1.09006 * 109.46690 * 60.00297 * 1 2 3 31 31 H 1.08999 * 109.47141 * 59.99965 * 3 2 1 32 32 H 1.09005 * 109.47293 * 300.00141 * 3 2 1 33 33 H 0.97005 * 120.00081 * 359.97438 * 7 5 4 34 34 H 1.09001 * 109.47190 * 59.99954 * 8 7 5 35 35 H 1.08997 * 109.47182 * 299.99745 * 8 7 5 36 36 H 1.08998 * 109.47211 * 300.02788 * 10 9 8 37 37 H 1.09006 * 109.47032 * 60.02550 * 10 9 8 38 38 H 1.08998 * 109.47579 * 180.02562 * 10 9 8 39 39 H 1.09003 * 109.49322 * 301.33134 * 11 9 8 40 40 H 1.09002 * 109.49842 * 61.42124 * 11 9 8 41 41 H 1.09003 * 109.58858 * 185.57446 * 12 11 9 42 42 H 1.08999 * 109.58309 * 65.15096 * 12 11 9 43 43 H 0.97006 * 119.99594 * 179.97438 * 17 16 14 44 44 H 1.08998 * 109.58454 * 186.60182 * 22 13 12 45 45 H 1.09003 * 109.70384 * 66.25107 * 22 13 12 46 46 H 1.08992 * 109.50192 * 298.58107 * 23 9 8 47 47 H 1.09006 * 109.49534 * 58.67999 * 23 9 8 48 48 H 1.09010 * 110.75879 * 275.07144 * 24 4 3 49 49 H 1.08999 * 110.75663 * 38.43651 * 24 4 3 50 50 H 1.08999 * 110.46783 * 203.39480 * 25 24 4 51 51 H 1.08994 * 110.46985 * 80.77513 * 25 24 4 52 52 H 1.08997 * 110.03816 * 264.32475 * 26 25 24 53 53 H 1.09008 * 110.02911 * 142.89137 * 26 25 24 54 54 H 1.08999 * 110.02744 * 240.71231 * 27 26 25 55 55 H 1.08999 * 110.03459 * 119.28346 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.0035 0.4241 1.2134 6 8 4.7617 0.9478 2.0018 7 7 3.5795 -0.8379 1.4228 8 6 4.0349 -1.5773 2.6026 9 6 3.4100 -2.9740 2.6018 10 6 1.8854 -2.8503 2.6344 11 6 3.8339 -3.7212 1.3352 12 6 3.1791 -5.1060 1.3207 13 7 3.5137 -5.8004 2.5715 14 6 4.0787 -7.0476 2.5475 15 1 4.7104 -7.3700 3.3620 16 6 3.8396 -7.8972 1.4762 17 7 4.6616 -8.8959 1.2321 18 14 2.3513 -7.6235 0.3809 19 1 2.7378 -6.7779 -0.7771 20 1 1.8490 -8.9326 -0.1081 21 1 1.2842 -6.9423 1.1570 22 6 3.2311 -5.1311 3.8485 23 6 3.8854 -3.7460 3.8347 24 6 4.0239 0.4909 -1.2964 25 6 5.4894 0.9888 -1.4152 26 6 5.4300 2.4574 -0.9465 27 6 4.1877 2.5818 -0.0470 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 1.6887 1.8463 0.8900 32 1 1.6887 1.8464 -0.8900 33 1 2.9728 -1.2566 0.7923 34 1 3.7323 -1.0449 3.5043 35 1 5.1211 -1.6649 2.5796 36 1 1.5833 -2.3171 3.5357 37 1 1.5466 -2.3004 1.7562 38 1 1.4400 -3.8451 2.6342 39 1 3.5155 -3.1588 0.4574 40 1 4.9183 -3.8313 1.3235 41 1 3.5546 -5.6789 0.4728 42 1 2.0974 -4.9978 1.2409 43 1 4.4943 -9.4899 0.4837 44 1 3.6409 -5.7206 4.6686 45 1 2.1540 -5.0251 3.9774 46 1 4.9692 -3.8560 3.7995 47 1 3.6035 -3.2014 4.7359 48 1 3.9890 -0.5935 -1.1908 49 1 3.4346 0.8155 -2.1540 50 1 5.8287 0.9319 -2.4494 51 1 6.1434 0.4072 -0.7656 52 1 5.3363 3.1204 -1.8065 53 1 6.3277 2.7050 -0.3797 54 1 3.4911 3.3052 -0.4706 55 1 4.4824 2.8899 0.9562 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278610867.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:49 Heat of formation + Delta-G solvation = -96.806455 kcal Electronic energy + Delta-G solvation = -32409.964770 eV Core-core repulsion = 28445.949241 eV Total energy + Delta-G solvation = -3964.015528 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 3.75 seconds Orbital eigenvalues (eV) -41.70739 -40.40343 -38.75716 -37.78681 -36.61933 -34.64441 -33.14724 -31.97395 -31.74741 -29.70654 -28.82257 -28.02998 -27.46487 -25.71865 -25.16700 -24.44097 -23.46286 -22.26543 -21.34078 -20.45120 -19.68405 -18.43800 -18.06661 -17.28955 -17.21689 -17.08261 -16.68226 -16.37696 -16.11131 -15.94615 -15.84636 -15.44078 -15.28934 -15.10688 -14.86724 -14.49480 -14.29888 -14.14971 -14.02982 -13.91586 -13.43154 -13.34825 -13.16359 -12.86205 -12.49597 -12.43352 -12.37290 -12.26014 -12.21637 -12.17597 -12.08675 -12.03402 -11.96732 -11.68866 -11.63346 -11.55585 -11.34664 -11.22240 -11.13203 -10.76721 -10.63966 -10.50984 -9.96563 -8.88099 -8.15144 -5.46090 1.30731 1.41695 1.51464 1.66507 2.26455 2.43378 2.74804 3.07034 3.38286 3.51585 3.58340 3.74287 3.75143 3.80909 3.90944 4.01603 4.24655 4.29425 4.30654 4.38290 4.46652 4.49844 4.54819 4.55148 4.59512 4.61826 4.64265 4.70954 4.73562 4.74397 4.75912 4.80104 4.85452 4.90342 4.94332 4.97275 5.03738 5.05417 5.07010 5.11959 5.18843 5.24822 5.25786 5.29082 5.32019 5.36361 5.46458 5.58049 5.62019 5.88888 6.14329 6.18977 6.67670 6.94668 7.33570 7.65445 8.05931 9.05097 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014625 B = 0.003300 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.071602 B = 8484.051382 C = 8589.404627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.408 6.408 3 C 0.079 3.921 4 C -0.082 4.082 5 C 0.523 3.477 6 O -0.587 6.587 7 N -0.705 5.705 8 C 0.139 3.861 9 C -0.054 4.054 10 C -0.138 4.138 11 C -0.113 4.113 12 C 0.124 3.876 13 N -0.619 5.619 14 C -0.248 4.248 15 H 0.048 0.952 16 C -0.038 4.038 17 N -0.960 5.960 18 Si 0.949 3.051 19 H -0.275 1.275 20 H -0.313 1.313 21 H -0.256 1.256 22 C 0.145 3.855 23 C -0.115 4.115 24 C -0.101 4.101 25 C -0.131 4.131 26 C -0.118 4.118 27 C -0.103 4.103 28 H 0.091 0.909 29 H 0.045 0.955 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.089 0.911 33 H 0.414 0.586 34 H 0.066 0.934 35 H 0.047 0.953 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.053 0.947 39 H 0.073 0.927 40 H 0.045 0.955 41 H 0.043 0.957 42 H 0.042 0.958 43 H 0.261 0.739 44 H 0.050 0.950 45 H 0.043 0.957 46 H 0.047 0.953 47 H 0.087 0.913 48 H 0.062 0.938 49 H 0.102 0.898 50 H 0.084 0.916 51 H 0.039 0.961 52 H 0.088 0.912 53 H 0.052 0.948 54 H 0.098 0.902 55 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.635 27.116 -6.014 29.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.328 6.328 3 C 0.003 3.997 4 C -0.085 4.085 5 C 0.310 3.690 6 O -0.468 6.468 7 N -0.359 5.359 8 C 0.014 3.986 9 C -0.054 4.054 10 C -0.195 4.195 11 C -0.152 4.152 12 C 0.000 4.000 13 N -0.343 5.343 14 C -0.378 4.378 15 H 0.066 0.934 16 C -0.232 4.232 17 N -0.607 5.607 18 Si 0.778 3.222 19 H -0.201 1.201 20 H -0.242 1.242 21 H -0.180 1.180 22 C 0.021 3.979 23 C -0.154 4.154 24 C -0.139 4.139 25 C -0.168 4.168 26 C -0.156 4.156 27 C -0.141 4.141 28 H 0.109 0.891 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.107 0.893 33 H 0.254 0.746 34 H 0.085 0.915 35 H 0.065 0.935 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.072 0.928 39 H 0.092 0.908 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.061 0.939 46 H 0.066 0.934 47 H 0.105 0.895 48 H 0.081 0.919 49 H 0.121 0.879 50 H 0.103 0.897 51 H 0.058 0.942 52 H 0.107 0.893 53 H 0.071 0.929 54 H 0.117 0.883 55 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.983 27.172 -5.511 29.144 hybrid contribution -0.386 -0.877 -0.481 1.073 sum -9.369 26.294 -5.993 28.550 Atomic orbital electron populations 1.22884 0.79158 1.03681 1.00933 1.87706 1.21517 1.27984 1.95581 1.22542 0.89697 0.85282 1.02228 1.21760 0.95625 0.97386 0.93738 1.20751 0.79563 0.81801 0.86913 1.90636 1.37783 1.69473 1.48865 1.46124 1.48995 1.14034 1.26709 1.21264 0.97896 0.91002 0.88395 1.20557 0.96902 0.92506 0.95472 1.21895 0.93072 1.01882 1.02620 1.21936 0.99895 0.95756 0.97657 1.21384 0.97377 0.92836 0.88425 1.44452 1.72897 1.15279 1.01716 1.18878 1.21460 0.90919 1.06524 0.93435 1.25934 1.00800 0.96116 1.00395 1.69990 1.37994 1.21075 1.31634 0.85865 0.81900 0.75365 0.79086 1.20136 1.24188 1.18028 1.21100 0.97718 0.92179 0.86920 1.21902 0.99945 0.96122 0.97421 1.22604 0.96142 0.99694 0.95418 1.22470 0.96402 0.96267 1.01701 1.22080 0.97435 0.96613 0.99431 1.22078 0.97430 0.93468 1.01141 0.89097 0.93585 0.92424 0.92871 0.89331 0.74557 0.91531 0.93496 0.91434 0.91517 0.92798 0.90819 0.93661 0.93896 0.94051 0.93056 0.93110 0.93863 0.93387 0.89491 0.91902 0.87914 0.89693 0.94249 0.89316 0.92897 0.88336 0.91895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 113.37 1.25 1.56 16 2 O -0.41 -6.32 8.01 -148.98 -1.19 -7.51 16 3 C 0.08 1.08 4.70 71.98 0.34 1.41 16 4 C -0.08 -1.47 0.60 -51.85 -0.03 -1.50 16 5 C 0.52 13.58 6.30 87.66 0.55 14.13 16 6 O -0.59 -19.62 15.43 -3.01 -0.05 -19.67 16 7 N -0.71 -17.47 4.41 -463.06 -2.04 -19.51 16 8 C 0.14 3.77 4.56 86.38 0.39 4.16 16 9 C -0.05 -1.52 0.53 -52.15 -0.03 -1.55 16 10 C -0.14 -3.35 7.54 71.98 0.54 -2.81 16 11 C -0.11 -3.80 4.75 30.67 0.15 -3.65 16 12 C 0.12 5.15 3.73 86.36 0.32 5.47 16 13 N -0.62 -28.90 2.77 -699.10 -1.94 -30.84 16 14 C -0.25 -14.26 10.04 84.03 0.84 -13.42 16 15 H 0.05 3.01 8.06 -2.91 -0.02 2.99 16 16 C -0.04 -2.25 5.23 84.86 0.44 -1.81 16 17 N -0.96 -61.33 13.97 21.65 0.30 -61.02 16 18 Si 0.95 46.52 24.35 68.60 1.67 48.19 16 19 H -0.27 -12.70 6.62 99.48 0.66 -12.04 16 20 H -0.31 -15.64 7.11 99.48 0.71 -14.94 16 21 H -0.26 -11.78 6.64 99.48 0.66 -11.12 16 22 C 0.15 5.48 6.04 86.36 0.52 6.00 16 23 C -0.11 -3.54 4.91 30.67 0.15 -3.39 16 24 C -0.10 -1.65 5.60 32.00 0.18 -1.47 16 25 C -0.13 -2.29 6.62 31.79 0.21 -2.08 16 26 C -0.12 -1.85 6.80 31.32 0.21 -1.64 16 27 C -0.10 -1.68 5.75 31.32 0.18 -1.50 16 28 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 29 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.06 0.44 8.14 -2.38 -0.02 0.42 16 31 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 33 H 0.41 9.44 3.89 -92.70 -0.36 9.08 16 34 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.07 1.45 6.86 -2.38 -0.02 1.43 16 38 H 0.05 1.50 4.98 -2.39 -0.01 1.49 16 39 H 0.07 2.12 6.82 -2.39 -0.02 2.11 16 40 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.04 2.01 4.49 -2.39 -0.01 2.00 16 42 H 0.04 1.61 5.63 -2.39 -0.01 1.60 16 43 H 0.26 15.79 8.31 -92.70 -0.77 15.02 16 44 H 0.05 1.99 7.93 -2.39 -0.02 1.97 16 45 H 0.04 1.50 6.70 -2.39 -0.02 1.49 16 46 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 47 H 0.09 2.19 8.14 -2.38 -0.02 2.17 16 48 H 0.06 1.20 7.64 -2.38 -0.02 1.18 16 49 H 0.10 1.20 8.06 -2.39 -0.02 1.18 16 50 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 51 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 52 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 53 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 54 H 0.10 1.01 7.83 -2.39 -0.02 0.99 16 55 H 0.06 1.35 6.86 -2.39 -0.02 1.33 16 Total: -1.00 -72.79 400.20 3.39 -69.41 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: 0.40 Total: 23.03 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: 6.23 Total: -2.08 kcal Atomic # 7 Polarization: -107.70 SS G_CDS: -3.68 Total: -111.37 kcal Atomic # 8 Polarization: -25.94 SS G_CDS: -1.24 Total: -27.18 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 1.67 Total: 48.19 kcal Total: -72.79 3.39 -69.41 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278610867.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.399 kcal (2) G-P(sol) polarization free energy of solvation -72.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.75 seconds