Wall clock time and date at job start Tue Mar 31 2020 22:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 110.43271 * 2 1 4 4 C 1.54100 * 110.48966 * 122.54449 * 2 1 3 5 5 O 1.43739 * 107.29170 * 120.70895 * 4 2 1 6 6 C 1.44380 * 106.97708 * 333.48813 * 5 4 2 7 7 H 1.09006 * 110.61731 * 281.39751 * 6 5 4 8 8 C 1.53006 * 110.61936 * 158.56415 * 6 5 4 9 9 C 1.52999 * 109.46997 * 66.45346 * 8 6 5 10 10 C 1.50706 * 109.46573 * 180.02562 * 9 8 6 11 11 O 1.21274 * 120.00042 * 359.72068 * 10 9 8 12 12 N 1.34777 * 119.99766 * 179.97438 * 10 9 8 13 13 C 1.47023 * 125.64628 * 359.69429 * 12 10 9 14 14 C 1.54317 * 107.27461 * 180.96487 * 13 12 10 15 15 C 1.55152 * 102.86205 * 22.52570 * 14 13 12 16 16 H 1.08999 * 111.00707 * 82.37948 * 15 14 13 17 17 C 1.53007 * 111.00688 * 206.22660 * 15 14 13 18 18 C 1.52991 * 109.47012 * 287.20103 * 17 15 14 19 19 N 1.46503 * 109.46946 * 179.97438 * 18 17 15 20 20 C 1.36936 * 120.00157 * 179.97438 * 19 18 17 21 21 H 1.08007 * 120.00318 * 0.02562 * 20 19 18 22 22 C 1.38815 * 120.00460 * 180.02562 * 20 19 18 23 23 N 1.31623 * 119.99447 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00424 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.47148 * 59.99812 * 24 22 20 26 26 H 1.48502 * 109.47355 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47370 * 299.99928 * 24 22 20 28 28 C 1.47424 * 125.64907 * 179.97438 * 12 10 9 29 29 C 1.54811 * 110.48773 * 237.31518 * 2 1 3 30 30 H 1.09002 * 109.47021 * 298.90614 * 1 2 3 31 31 H 1.08993 * 109.47206 * 58.91059 * 1 2 3 32 32 H 1.09003 * 109.46377 * 178.90582 * 1 2 3 33 33 H 1.09004 * 109.47450 * 181.09112 * 3 2 1 34 34 H 1.09005 * 109.47509 * 301.09380 * 3 2 1 35 35 H 1.09005 * 109.47476 * 61.09221 * 3 2 1 36 36 H 1.09002 * 109.87798 * 1.28497 * 4 2 1 37 37 H 1.09001 * 109.88162 * 240.13099 * 4 2 1 38 38 H 1.09000 * 109.46866 * 306.45134 * 8 6 5 39 39 H 1.09001 * 109.46611 * 186.45251 * 8 6 5 40 40 H 1.09000 * 109.47486 * 60.00167 * 9 8 6 41 41 H 1.09001 * 109.47362 * 299.99445 * 9 8 6 42 42 H 1.08992 * 109.88775 * 300.51005 * 13 12 10 43 43 H 1.09006 * 109.88480 * 61.67788 * 13 12 10 44 44 H 1.09006 * 110.92627 * 264.11398 * 14 13 12 45 45 H 1.08997 * 110.74326 * 140.85521 * 14 13 12 46 46 H 1.09005 * 109.46611 * 47.19484 * 17 15 14 47 47 H 1.09000 * 109.47327 * 167.19287 * 17 15 14 48 48 H 1.09003 * 109.47437 * 299.99293 * 18 17 15 49 49 H 1.09003 * 109.47441 * 59.99878 * 18 17 15 50 50 H 0.97001 * 119.99931 * 359.97438 * 19 18 17 51 51 H 0.97001 * 119.99529 * 180.02562 * 23 22 20 52 52 H 1.08995 * 110.37098 * 274.67570 * 28 12 10 53 53 H 1.08998 * 110.36282 * 37.00756 * 28 12 10 54 54 H 1.09005 * 110.90443 * 144.00570 * 29 2 1 55 55 H 1.08995 * 110.90656 * 20.40068 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0642 1.4337 0.0000 4 6 2.0695 -0.7765 1.2168 5 8 2.8755 -1.8546 0.7126 6 6 2.3782 -2.1722 -0.6051 7 1 1.4716 -2.7737 -0.5385 8 6 3.4467 -2.9003 -1.4232 9 6 3.7189 -4.2714 -0.8012 10 6 4.7718 -4.9882 -1.6067 11 8 5.2529 -4.4570 -2.5850 12 7 5.1750 -6.2217 -1.2428 13 6 4.6784 -6.9784 -0.0842 14 6 5.4406 -8.3198 -0.0520 15 6 6.7293 -8.0041 -0.8564 16 1 7.4728 -7.5152 -0.2270 17 6 7.3020 -9.2715 -1.4942 18 6 7.9337 -10.1471 -0.4103 19 7 8.4816 -11.3609 -1.0209 20 6 9.1007 -12.3005 -0.2405 21 1 9.1847 -12.1470 0.8253 22 6 9.6202 -13.4504 -0.8191 23 7 9.5173 -13.6377 -2.1179 24 14 10.4641 -14.7324 0.2455 25 1 9.5062 -15.2423 1.2593 26 1 10.9271 -15.8568 -0.6069 27 1 11.6294 -14.1177 0.9307 28 6 6.1911 -7.0332 -1.9372 29 6 2.0719 -0.7831 -1.2206 30 1 -0.3633 0.4968 0.8996 31 1 -0.3633 0.5306 -0.8800 32 1 -0.3632 -1.0276 -0.0196 33 1 3.1539 1.4155 -0.0196 34 1 1.6937 1.9595 -0.8800 35 1 1.7255 1.9477 0.8996 36 1 1.2392 -1.1757 1.7995 37 1 2.6774 -0.1179 1.8371 38 1 4.3652 -2.3134 -1.4253 39 1 3.0953 -3.0290 -2.4469 40 1 2.8004 -4.8583 -0.7990 41 1 4.0703 -4.1427 0.2226 42 1 4.8682 -6.4200 0.8324 43 1 3.6098 -7.1640 -0.1930 44 1 4.8648 -9.1066 -0.5394 45 1 5.6846 -8.6007 0.9725 46 1 6.5017 -9.8238 -1.9867 47 1 8.0600 -8.9982 -2.2282 48 1 8.7340 -9.5949 0.0824 49 1 7.1756 -10.4204 0.3237 50 1 8.4057 -11.4990 -1.9780 51 1 9.8801 -14.4414 -2.5221 52 1 5.7366 -7.5910 -2.7559 53 1 6.9944 -6.3976 -2.3098 54 1 2.9798 -0.3205 -1.6077 55 1 1.3141 -0.8615 -2.0000 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280273033.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:18 Heat of formation + Delta-G solvation = -118.401341 kcal Electronic energy + Delta-G solvation = -28919.592226 eV Core-core repulsion = 24954.640273 eV Total energy + Delta-G solvation = -3964.951953 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.27341 -40.77440 -38.95918 -36.82500 -35.74782 -34.64571 -34.35221 -32.62577 -30.58297 -30.46698 -28.75372 -28.23824 -26.91209 -26.11958 -25.05080 -23.75734 -23.03600 -21.95105 -21.26087 -20.35081 -19.97193 -19.12375 -18.16167 -17.50851 -17.26728 -16.69871 -16.58387 -16.38249 -15.90786 -15.82161 -15.42470 -15.26805 -15.14017 -14.77137 -14.54454 -14.41272 -14.33129 -14.04728 -13.84116 -13.74611 -13.62240 -13.25367 -13.08360 -12.97783 -12.84975 -12.72431 -12.66467 -12.40421 -12.34796 -12.24056 -12.19587 -12.08110 -11.94761 -11.62774 -11.60794 -11.56840 -11.53601 -11.49508 -11.39540 -10.89974 -10.87553 -10.53111 -9.67564 -8.98919 -7.94331 -5.23483 1.48195 1.51559 1.57739 1.59799 1.97108 2.57360 2.92616 3.33577 3.39490 3.49157 3.62873 3.68192 3.76534 3.83116 3.88964 3.97135 4.10149 4.18233 4.27815 4.32181 4.35239 4.35699 4.41575 4.47945 4.50775 4.61630 4.62343 4.71507 4.73052 4.77307 4.78728 4.79197 4.81534 4.85980 4.89093 4.95602 4.98764 5.01237 5.06128 5.10742 5.12241 5.22086 5.23129 5.26582 5.31064 5.33624 5.39533 5.41884 5.46565 5.50531 6.01117 6.28107 6.51750 7.11600 7.33957 8.11217 8.33387 9.29230 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.038129 B = 0.001425 C = 0.001400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.181049 B =19644.702072 C =20000.900804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.099 4.099 3 C -0.137 4.137 4 C 0.049 3.951 5 O -0.395 6.395 6 C 0.080 3.920 7 H 0.086 0.914 8 C -0.093 4.093 9 C -0.122 4.122 10 C 0.520 3.480 11 O -0.591 6.591 12 N -0.621 5.621 13 C 0.101 3.899 14 C -0.124 4.124 15 C -0.085 4.085 16 H 0.086 0.914 17 C -0.102 4.102 18 C 0.154 3.846 19 N -0.750 5.750 20 C -0.249 4.249 21 H 0.077 0.923 22 C -0.077 4.077 23 N -0.971 5.971 24 Si 0.975 3.025 25 H -0.275 1.275 26 H -0.295 1.295 27 H -0.278 1.278 28 C 0.109 3.891 29 C -0.143 4.143 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.050 0.950 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.056 0.944 39 H 0.081 0.919 40 H 0.117 0.883 41 H 0.106 0.894 42 H 0.087 0.913 43 H 0.091 0.909 44 H 0.079 0.921 45 H 0.096 0.904 46 H 0.064 0.936 47 H 0.055 0.945 48 H 0.016 0.984 49 H 0.030 0.970 50 H 0.373 0.627 51 H 0.251 0.749 52 H 0.067 0.933 53 H 0.060 0.940 54 H 0.070 0.930 55 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.128 30.132 6.965 38.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.099 4.099 3 C -0.194 4.194 4 C -0.027 4.027 5 O -0.315 6.315 6 C 0.023 3.977 7 H 0.103 0.897 8 C -0.131 4.131 9 C -0.161 4.161 10 C 0.311 3.689 11 O -0.473 6.473 12 N -0.354 5.354 13 C -0.021 4.021 14 C -0.162 4.162 15 C -0.105 4.105 16 H 0.104 0.896 17 C -0.140 4.140 18 C 0.028 3.972 19 N -0.393 5.393 20 C -0.380 4.380 21 H 0.095 0.905 22 C -0.269 4.269 23 N -0.622 5.622 24 Si 0.804 3.196 25 H -0.201 1.201 26 H -0.222 1.222 27 H -0.204 1.204 28 C -0.014 4.014 29 C -0.180 4.180 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.102 0.898 38 H 0.075 0.925 39 H 0.100 0.900 40 H 0.135 0.865 41 H 0.124 0.876 42 H 0.105 0.895 43 H 0.109 0.891 44 H 0.098 0.902 45 H 0.114 0.886 46 H 0.083 0.917 47 H 0.074 0.926 48 H 0.034 0.966 49 H 0.048 0.952 50 H 0.204 0.796 51 H 0.060 0.940 52 H 0.085 0.915 53 H 0.079 0.921 54 H 0.089 0.911 55 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -22.690 30.327 6.727 38.469 hybrid contribution 0.819 -0.911 -0.333 1.269 sum -21.872 29.417 6.394 37.210 Atomic orbital electron populations 1.21867 0.92365 1.02364 1.02791 1.21947 0.97182 0.96443 0.94353 1.21845 1.00577 0.94297 1.02710 1.23446 0.95017 0.88360 0.95908 1.88859 1.57404 1.53361 1.31850 1.23200 0.96227 0.95946 0.82372 0.89650 1.21328 0.98775 0.94171 0.98839 1.21607 0.97953 0.96386 1.00202 1.21087 0.83372 0.79722 0.84757 1.90677 1.59472 1.66930 1.30183 1.48694 1.40806 1.15986 1.29898 1.22271 0.99591 0.92008 0.88208 1.22752 0.94877 0.96460 1.02131 1.22175 0.97757 0.94277 0.96304 0.89572 1.21494 0.99928 0.94803 0.97787 1.20797 0.95065 0.86412 0.94961 1.42633 1.69061 1.20268 1.07338 1.19642 1.28135 0.98348 0.91909 0.90521 1.25604 1.03248 1.00933 0.97100 1.69821 1.52834 1.28735 1.10775 0.85187 0.78538 0.78352 0.77539 1.20141 1.22160 1.20420 1.22214 0.91008 0.92640 0.95506 1.23303 1.02026 0.94673 0.98036 0.91603 0.91696 0.92217 0.93127 0.91816 0.91514 0.91425 0.89824 0.92548 0.90040 0.86504 0.87578 0.89459 0.89057 0.90206 0.88574 0.91686 0.92607 0.96576 0.95207 0.79589 0.94020 0.91519 0.92098 0.91144 0.88903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.85 8.25 71.98 0.59 -0.26 16 2 C -0.10 -0.90 0.99 -51.19 -0.05 -0.95 16 3 C -0.14 -1.13 8.27 71.98 0.60 -0.54 16 4 C 0.05 0.56 7.04 72.35 0.51 1.07 16 5 O -0.39 -6.49 10.89 -148.98 -1.62 -8.11 16 6 C 0.08 1.03 3.33 31.28 0.10 1.14 16 7 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 8 C -0.09 -1.55 4.28 30.60 0.13 -1.42 16 9 C -0.12 -1.95 4.81 29.85 0.14 -1.80 16 10 C 0.52 12.58 7.85 87.66 0.69 13.27 16 11 O -0.59 -19.47 16.24 -3.01 -0.05 -19.52 16 12 N -0.62 -13.69 3.33 -811.78 -2.70 -16.39 16 13 C 0.10 1.54 6.48 86.73 0.56 2.10 16 14 C -0.12 -2.30 5.91 31.78 0.19 -2.11 16 15 C -0.09 -2.03 3.00 -9.39 -0.03 -2.06 16 16 H 0.09 2.05 8.14 -2.39 -0.02 2.04 16 17 C -0.10 -3.13 4.84 30.59 0.15 -2.99 16 18 C 0.15 5.97 6.16 86.38 0.53 6.50 16 19 N -0.75 -38.62 5.60 -343.45 -1.92 -40.54 16 20 C -0.25 -14.03 9.99 84.03 0.84 -13.19 16 21 H 0.08 4.12 7.83 -2.91 -0.02 4.09 16 22 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 23 N -0.97 -60.11 13.06 21.65 0.28 -59.82 16 24 Si 0.98 46.22 29.55 68.60 2.03 48.25 16 25 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 26 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 27 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 28 C 0.11 2.73 6.38 86.86 0.55 3.28 16 29 C -0.14 -1.57 5.70 31.89 0.18 -1.38 16 30 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.06 0.36 8.14 -2.39 -0.02 0.35 16 33 H 0.05 0.52 8.13 -2.38 -0.02 0.50 16 34 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 35 H 0.07 0.43 8.14 -2.38 -0.02 0.41 16 36 H 0.07 0.64 7.69 -2.39 -0.02 0.62 16 37 H 0.08 0.91 7.69 -2.39 -0.02 0.89 16 38 H 0.06 1.19 8.10 -2.39 -0.02 1.17 16 39 H 0.08 1.38 8.10 -2.39 -0.02 1.36 16 40 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.11 1.59 7.92 -2.39 -0.02 1.57 16 42 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 44 H 0.08 1.53 7.91 -2.38 -0.02 1.51 16 45 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.06 2.01 7.97 -2.38 -0.02 2.00 16 47 H 0.06 1.82 8.14 -2.39 -0.02 1.81 16 48 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 49 H 0.03 1.11 7.75 -2.39 -0.02 1.09 16 50 H 0.37 20.44 7.67 -92.71 -0.71 19.73 16 51 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 52 H 0.07 1.70 8.04 -2.39 -0.02 1.68 16 53 H 0.06 1.71 8.04 -2.39 -0.02 1.69 16 54 H 0.07 0.92 7.79 -2.38 -0.02 0.90 16 55 H 0.09 0.78 7.86 -2.39 -0.02 0.77 16 Total: -1.00 -72.92 431.41 2.29 -70.63 By element: Atomic # 1 Polarization: 28.69 SS G_CDS: 0.12 Total: 28.80 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: 6.16 Total: -3.30 kcal Atomic # 7 Polarization: -112.41 SS G_CDS: -4.34 Total: -116.76 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: -1.67 Total: -27.63 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -72.92 2.29 -70.63 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280273033.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.769 kcal (2) G-P(sol) polarization free energy of solvation -72.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds