Wall clock time and date at job start Tue Mar 31 2020 22:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 114.00204 * 2 1 4 4 H 1.09002 * 109.46880 * 329.99601 * 3 2 1 5 5 C 1.52997 * 109.47503 * 89.99725 * 3 2 1 6 6 C 1.53000 * 109.47060 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.47233 * 299.99657 * 6 5 3 8 8 C 1.52997 * 109.46817 * 60.00194 * 7 6 5 9 9 H 1.09002 * 109.47153 * 60.00231 * 8 7 6 10 10 C 1.53002 * 109.47143 * 180.02562 * 8 7 6 11 11 C 1.50696 * 109.47039 * 295.00134 * 10 8 7 12 12 O 1.21284 * 120.00000 * 0.02562 * 11 10 8 13 13 N 1.34782 * 120.00377 * 180.02562 * 11 10 8 14 14 C 1.46924 * 120.62463 * 359.72093 * 13 11 10 15 15 C 1.53622 * 108.54511 * 126.37279 * 14 13 11 16 16 C 1.53038 * 109.24343 * 54.84815 * 15 14 13 17 17 C 1.53002 * 109.44794 * 178.49959 * 16 15 14 18 18 N 1.46502 * 109.45630 * 58.53862 * 16 15 14 19 19 C 1.36934 * 120.00392 * 59.92879 * 18 16 15 20 20 H 1.08004 * 119.99631 * 0.02562 * 19 18 16 21 21 C 1.38811 * 120.00182 * 179.97438 * 19 18 16 22 22 N 1.31617 * 119.99694 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00182 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.46770 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47283 * 119.99720 * 23 21 19 26 26 H 1.48499 * 109.46605 * 240.00094 * 23 21 19 27 27 C 1.53039 * 109.54175 * 298.51580 * 16 15 14 28 28 C 1.46918 * 120.63517 * 179.97438 * 13 11 10 29 29 C 1.52999 * 109.47162 * 210.00222 * 3 2 1 30 30 H 1.08996 * 109.47054 * 300.00226 * 1 2 3 31 31 H 1.08997 * 109.46428 * 60.00355 * 1 2 3 32 32 H 1.09001 * 109.47118 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47153 * 60.00043 * 5 3 2 34 34 H 1.09001 * 109.46832 * 300.00234 * 5 3 2 35 35 H 1.08992 * 109.47399 * 59.99823 * 6 5 3 36 36 H 1.09004 * 109.46724 * 180.02562 * 6 5 3 37 37 H 1.08993 * 109.47662 * 180.02562 * 7 6 5 38 38 H 1.09002 * 109.47075 * 300.00932 * 7 6 5 39 39 H 1.08997 * 109.47011 * 55.00129 * 10 8 7 40 40 H 1.08999 * 109.47369 * 175.00236 * 10 8 7 41 41 H 1.09002 * 109.58632 * 246.20239 * 14 13 11 42 42 H 1.09000 * 109.58901 * 6.62073 * 14 13 11 43 43 H 1.09006 * 109.62949 * 294.86061 * 15 14 13 44 44 H 1.09003 * 109.46225 * 174.73960 * 15 14 13 45 45 H 1.09004 * 109.47029 * 180.02562 * 17 16 15 46 46 H 1.08996 * 109.47505 * 300.06754 * 17 16 15 47 47 H 1.09000 * 109.47014 * 60.06373 * 17 16 15 48 48 H 0.96999 * 119.99562 * 239.92794 * 18 16 15 49 49 H 0.97009 * 119.99689 * 180.02562 * 22 21 19 50 50 H 1.09002 * 109.49427 * 301.41353 * 27 16 15 51 51 H 1.08991 * 109.50080 * 181.31472 * 27 16 15 52 52 H 1.09005 * 109.58713 * 353.37339 * 28 13 11 53 53 H 1.09000 * 109.59202 * 113.79515 * 28 13 11 54 54 H 1.09000 * 109.47486 * 59.99398 * 29 3 2 55 55 H 1.09002 * 109.46716 * 299.99480 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 -0.5139 5 6 2.2177 1.7714 1.4424 6 6 2.8395 3.1694 1.4423 7 6 4.1881 3.1277 0.7210 8 6 3.9807 2.6617 -0.7215 9 1 3.3152 3.3553 -1.2353 10 6 5.3294 2.6193 -1.4427 11 6 5.8852 4.0159 -1.5509 12 8 5.2640 4.9527 -1.0955 13 7 7.0726 4.2239 -2.1537 14 6 7.8396 3.0983 -2.7047 15 6 8.1663 3.4027 -4.1746 16 6 8.8808 4.7532 -4.2633 17 6 9.2417 5.0437 -5.7215 18 7 10.1031 4.7124 -3.4568 19 6 11.0823 3.7991 -3.7432 20 1 10.9537 3.1090 -4.5640 21 6 12.2407 3.7608 -2.9794 22 7 12.3981 4.6029 -1.9801 23 14 13.5769 2.5154 -3.3705 24 1 13.1596 1.6905 -4.5328 25 1 14.8381 3.2283 -3.6962 26 1 13.7945 1.6369 -2.1932 27 6 7.9590 5.8556 -3.7368 28 6 7.6272 5.5796 -2.2674 29 6 3.3589 1.2632 -0.7213 30 1 -0.3633 0.5138 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 2.8829 1.0775 1.9563 34 1 1.2568 1.8015 1.9562 35 1 2.1740 3.8630 0.9286 36 1 2.9876 3.5011 2.4700 37 1 4.6313 4.1234 0.7212 38 1 4.8537 2.4339 1.2347 39 1 6.0230 1.9948 -0.8797 40 1 5.1946 2.2036 -2.4412 41 1 8.7638 2.9748 -2.1402 42 1 7.2462 2.1862 -2.6420 43 1 7.2440 3.4403 -4.7545 44 1 8.8142 2.6214 -4.5720 45 1 9.7510 6.0054 -5.7850 46 1 9.8982 4.2587 -6.0967 47 1 8.3323 5.0745 -6.3217 48 1 10.2188 5.3325 -2.7199 49 1 13.2078 4.5764 -1.4465 50 1 7.0388 5.8700 -4.3208 51 1 8.4597 6.8199 -3.8219 52 1 6.8935 6.3052 -1.9161 53 1 8.5344 5.6548 -1.6679 54 1 3.2112 0.9312 -1.7489 55 1 4.0242 0.5693 -0.2074 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281500283.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:12 Heat of formation + Delta-G solvation = -110.401288 kcal Electronic energy + Delta-G solvation = -31164.801649 eV Core-core repulsion = 27200.196604 eV Total energy + Delta-G solvation = -3964.605045 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.45131 -40.21971 -39.16436 -37.41648 -35.94390 -34.20692 -33.48985 -32.01819 -31.02640 -30.82892 -29.34723 -27.87548 -27.27866 -25.83189 -24.20967 -24.10177 -23.34950 -22.42641 -20.92182 -20.58601 -19.40807 -18.94631 -18.03596 -17.39282 -16.88853 -16.64378 -16.48578 -16.31225 -16.00045 -15.66855 -15.53284 -15.40245 -15.06527 -14.86277 -14.55306 -14.38159 -14.20236 -14.03604 -13.85500 -13.50730 -13.21107 -13.18802 -12.95521 -12.87187 -12.73481 -12.66373 -12.57175 -12.52150 -12.39706 -12.08605 -12.03632 -11.94110 -11.92227 -11.79117 -11.52001 -11.40374 -11.34427 -11.27199 -11.04615 -10.85198 -10.51512 -10.35980 -9.51550 -8.87091 -7.84397 -5.09753 1.49352 1.51288 1.59045 1.72636 2.12221 2.62169 2.81715 3.50172 3.61151 3.67905 3.76036 3.86735 4.00047 4.03889 4.11147 4.11658 4.22321 4.24547 4.31949 4.33784 4.48131 4.50535 4.51399 4.53049 4.55598 4.66405 4.67883 4.70773 4.75182 4.78354 4.83083 4.84892 4.89393 4.91914 5.04468 5.05333 5.07502 5.08356 5.13951 5.20952 5.23798 5.26719 5.33886 5.39392 5.41221 5.48061 5.54823 5.60571 5.68227 5.74850 6.31908 6.37730 6.59371 7.27504 7.44821 8.21792 8.44668 9.39581 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016316 B = 0.002470 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.745268 B =11335.534956 C =11741.915853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.407 6.407 3 C 0.090 3.910 4 H 0.065 0.935 5 C -0.135 4.135 6 C -0.110 4.110 7 C -0.123 4.123 8 C -0.057 4.057 9 H 0.069 0.931 10 C -0.131 4.131 11 C 0.509 3.491 12 O -0.580 6.580 13 N -0.602 5.602 14 C 0.120 3.880 15 C -0.128 4.128 16 C 0.186 3.814 17 C -0.144 4.144 18 N -0.724 5.724 19 C -0.205 4.205 20 H 0.079 0.921 21 C -0.079 4.079 22 N -0.972 5.972 23 Si 0.957 3.043 24 H -0.264 1.264 25 H -0.304 1.304 26 H -0.301 1.301 27 C -0.118 4.118 28 C 0.120 3.880 29 C -0.106 4.106 30 H 0.046 0.954 31 H 0.048 0.952 32 H 0.095 0.905 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.103 0.897 40 H 0.116 0.884 41 H 0.051 0.949 42 H 0.105 0.895 43 H 0.077 0.923 44 H 0.066 0.934 45 H 0.038 0.962 46 H 0.042 0.958 47 H 0.067 0.933 48 H 0.370 0.630 49 H 0.244 0.756 50 H 0.082 0.918 51 H 0.070 0.930 52 H 0.080 0.920 53 H 0.046 0.954 54 H 0.077 0.923 55 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.675 -6.972 0.631 24.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.326 6.326 3 C 0.032 3.968 4 H 0.083 0.917 5 C -0.172 4.172 6 C -0.147 4.147 7 C -0.160 4.160 8 C -0.076 4.076 9 H 0.087 0.913 10 C -0.170 4.170 11 C 0.299 3.701 12 O -0.461 6.461 13 N -0.334 5.334 14 C -0.002 4.002 15 C -0.168 4.168 16 C 0.096 3.904 17 C -0.203 4.203 18 N -0.364 5.364 19 C -0.337 4.337 20 H 0.097 0.903 21 C -0.271 4.271 22 N -0.624 5.624 23 Si 0.788 3.212 24 H -0.189 1.189 25 H -0.232 1.232 26 H -0.229 1.229 27 C -0.157 4.157 28 C -0.003 4.003 29 C -0.143 4.143 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.114 0.886 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.121 0.879 40 H 0.134 0.866 41 H 0.070 0.930 42 H 0.123 0.877 43 H 0.095 0.905 44 H 0.085 0.915 45 H 0.057 0.943 46 H 0.061 0.939 47 H 0.086 0.914 48 H 0.203 0.797 49 H 0.053 0.947 50 H 0.101 0.899 51 H 0.088 0.912 52 H 0.099 0.901 53 H 0.065 0.935 54 H 0.096 0.904 55 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -23.802 -6.801 0.753 24.766 hybrid contribution 1.461 0.172 0.382 1.520 sum -22.341 -6.630 1.135 23.332 Atomic orbital electron populations 1.22943 0.79978 1.03627 1.00601 1.87873 1.21031 1.28495 1.95207 1.22143 0.94925 0.84068 0.95650 0.91736 1.21989 1.01352 0.96876 0.97017 1.21408 0.96291 0.96388 1.00650 1.21705 0.97632 1.01614 0.95053 1.20746 0.94729 0.96290 0.95867 0.91264 1.21786 0.98149 0.92770 1.04322 1.21205 0.79970 0.92422 0.76468 1.90606 1.59993 1.45963 1.49562 1.48190 1.19862 1.08401 1.56936 1.21758 0.95560 0.88315 0.94590 1.22296 1.00106 0.98851 0.95594 1.19876 0.85987 0.93553 0.90943 1.22140 1.00657 1.00590 0.96943 1.42696 1.16491 1.40810 1.36410 1.19461 0.95362 1.09080 1.09832 0.90349 1.25353 1.00789 1.01689 0.99243 1.69815 1.28000 1.41410 1.23172 0.85294 0.79788 0.78918 0.77162 1.18878 1.23239 1.22878 1.21981 0.99650 0.98809 0.95234 1.21346 0.97735 0.84111 0.97108 1.21590 0.95184 0.96230 1.01331 0.93491 0.93336 0.88637 0.91686 0.91307 0.92044 0.91479 0.92281 0.92381 0.87884 0.86559 0.93038 0.87719 0.90482 0.91527 0.94315 0.93913 0.91422 0.79728 0.94678 0.89898 0.91166 0.90135 0.93545 0.90387 0.91027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.82 113.37 1.23 1.53 16 2 O -0.41 -7.52 10.35 -148.98 -1.54 -9.06 16 3 C 0.09 1.52 2.61 30.59 0.08 1.60 16 4 H 0.06 1.02 7.79 -2.39 -0.02 1.00 16 5 C -0.13 -2.24 5.54 30.59 0.17 -2.07 16 6 C -0.11 -2.03 5.92 30.60 0.18 -1.85 16 7 C -0.12 -2.71 4.94 30.59 0.15 -2.56 16 8 C -0.06 -1.14 1.84 -10.78 -0.02 -1.16 16 9 H 0.07 1.52 7.96 -2.39 -0.02 1.50 16 10 C -0.13 -2.69 3.52 29.85 0.11 -2.58 16 11 C 0.51 14.71 7.42 87.65 0.65 15.36 16 12 O -0.58 -20.08 13.38 -3.04 -0.04 -20.12 16 13 N -0.60 -18.34 2.97 -818.16 -2.43 -20.77 16 14 C 0.12 3.54 6.11 86.51 0.53 4.07 16 15 C -0.13 -3.81 4.72 30.82 0.15 -3.67 16 16 C 0.19 6.39 0.74 3.63 0.00 6.40 16 17 C -0.14 -4.67 8.44 71.98 0.61 -4.06 16 18 N -0.72 -32.53 4.13 -303.22 -1.25 -33.78 16 19 C -0.21 -10.27 8.68 84.03 0.73 -9.54 16 20 H 0.08 3.77 6.70 -2.91 -0.02 3.75 16 21 C -0.08 -4.32 5.50 84.86 0.47 -3.85 16 22 N -0.97 -57.68 13.06 21.65 0.28 -57.40 16 23 Si 0.96 44.75 29.55 68.60 2.03 46.78 16 24 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 25 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 26 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 27 C -0.12 -3.64 4.96 30.66 0.15 -3.49 16 28 C 0.12 4.00 6.15 86.35 0.53 4.53 16 29 C -0.11 -1.80 4.86 30.61 0.15 -1.65 16 30 H 0.05 0.50 7.87 -2.39 -0.02 0.48 16 31 H 0.05 0.51 8.08 -2.39 -0.02 0.49 16 32 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.07 1.01 7.87 -2.39 -0.02 0.99 16 35 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.06 1.66 5.95 -2.39 -0.01 1.65 16 38 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.10 1.97 7.93 -2.39 -0.02 1.95 16 40 H 0.12 1.87 7.70 -2.39 -0.02 1.85 16 41 H 0.05 1.94 7.74 -2.39 -0.02 1.92 16 42 H 0.10 2.32 5.93 -2.39 -0.01 2.30 16 43 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 44 H 0.07 2.11 7.31 -2.39 -0.02 2.09 16 45 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 46 H 0.04 1.48 7.27 -2.39 -0.02 1.46 16 47 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 48 H 0.37 18.66 6.46 -92.71 -0.60 18.06 16 49 H 0.24 14.35 8.31 -92.70 -0.77 13.58 16 50 H 0.08 2.22 8.14 -2.39 -0.02 2.21 16 51 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 52 H 0.08 2.69 7.01 -2.38 -0.02 2.67 16 53 H 0.05 1.81 6.94 -2.39 -0.02 1.79 16 54 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 55 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -64.01 410.05 3.16 -60.85 By element: Atomic # 1 Polarization: 36.23 SS G_CDS: 0.25 Total: 36.48 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: 5.86 Total: -2.98 kcal Atomic # 7 Polarization: -108.55 SS G_CDS: -3.40 Total: -111.95 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: -1.58 Total: -29.19 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -64.01 3.16 -60.85 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281500283.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.547 kcal (2) G-P(sol) polarization free energy of solvation -64.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds