Wall clock time and date at job start Tue Mar 31 2020 22:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00135 * 2 1 4 4 H 1.09000 * 109.46795 * 29.99265 * 3 2 1 5 5 C 1.53005 * 109.46704 * 269.99800 * 3 2 1 6 6 C 1.53004 * 109.46690 * 179.97438 * 5 3 2 7 7 C 1.52993 * 109.47484 * 60.00032 * 6 5 3 8 8 C 1.53002 * 109.46911 * 299.99993 * 7 6 5 9 9 H 1.08996 * 109.47098 * 299.99469 * 8 7 6 10 10 C 1.53002 * 109.47083 * 179.97438 * 8 7 6 11 11 C 1.50701 * 109.46933 * 64.99999 * 10 8 7 12 12 O 1.21284 * 120.00261 * 359.97438 * 11 10 8 13 13 N 1.34777 * 120.00161 * 180.02562 * 11 10 8 14 14 C 1.46929 * 120.63258 * 180.02562 * 13 11 10 15 15 C 1.53190 * 108.77569 * 126.37089 * 14 13 11 16 16 C 1.53044 * 109.31414 * 54.63486 * 15 14 13 17 17 C 1.52995 * 109.46000 * 178.63035 * 16 15 14 18 18 N 1.46499 * 109.45999 * 58.65611 * 16 15 14 19 19 C 1.36939 * 119.99933 * 180.27593 * 18 16 15 20 20 H 1.08001 * 119.99700 * 359.72658 * 19 18 16 21 21 C 1.38810 * 120.00095 * 179.71972 * 19 18 16 22 22 N 1.31624 * 119.99740 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00044 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47201 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47080 * 120.00466 * 23 21 19 26 26 H 1.48506 * 109.47018 * 240.00565 * 23 21 19 27 27 C 1.53049 * 109.53695 * 298.63464 * 16 15 14 28 28 C 1.46926 * 120.62884 * 359.97438 * 13 11 10 29 29 C 1.52996 * 109.47201 * 60.00179 * 8 7 6 30 30 H 1.08997 * 109.46799 * 60.00763 * 1 2 3 31 31 H 1.08997 * 109.46713 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47223 * 300.00301 * 1 2 3 33 33 H 1.08996 * 109.47229 * 300.00028 * 5 3 2 34 34 H 1.09003 * 109.47417 * 60.00039 * 5 3 2 35 35 H 1.09005 * 109.47096 * 180.02562 * 6 5 3 36 36 H 1.09000 * 109.46888 * 299.99513 * 6 5 3 37 37 H 1.08991 * 109.47502 * 179.97438 * 7 6 5 38 38 H 1.09004 * 109.47031 * 59.99694 * 7 6 5 39 39 H 1.09000 * 109.47336 * 304.99974 * 10 8 7 40 40 H 1.09002 * 109.47115 * 184.99863 * 10 8 7 41 41 H 1.08996 * 109.58503 * 6.58419 * 14 13 11 42 42 H 1.09000 * 109.69731 * 246.22561 * 14 13 11 43 43 H 1.09003 * 109.49343 * 294.68486 * 15 14 13 44 44 H 1.08993 * 109.49956 * 174.58486 * 15 14 13 45 45 H 1.08998 * 109.46943 * 300.02528 * 17 16 15 46 46 H 1.09001 * 109.47567 * 60.02482 * 17 16 15 47 47 H 1.08998 * 109.47349 * 180.02562 * 17 16 15 48 48 H 0.97001 * 119.99790 * 359.97438 * 18 16 15 49 49 H 0.96998 * 119.99409 * 179.97438 * 22 21 19 50 50 H 1.08999 * 109.49573 * 181.31426 * 27 16 15 51 51 H 1.08998 * 109.49595 * 301.41125 * 27 16 15 52 52 H 1.08997 * 109.58722 * 353.41772 * 28 13 11 53 53 H 1.08996 * 109.59024 * 113.69714 * 28 13 11 54 54 H 1.08996 * 109.47675 * 59.99642 * 29 8 7 55 55 H 1.09007 * 109.47214 * 180.02562 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3449 1.9994 0.5137 5 6 2.2177 1.7713 -1.4426 6 6 2.8395 3.1693 -1.4426 7 6 4.1880 3.1277 -0.7212 8 6 3.9805 2.6619 0.7214 9 1 3.3150 3.3556 1.2350 10 6 5.3292 2.6197 1.4427 11 6 5.8849 4.0164 1.5508 12 8 5.2636 4.9532 1.0953 13 7 7.0727 4.2244 2.1527 14 6 7.6272 5.5803 2.2662 15 6 7.9588 5.8558 3.7362 16 6 8.8810 4.7536 4.2623 17 6 9.2419 5.0438 5.7205 18 7 10.1032 4.7135 3.4557 19 6 11.0803 3.7966 3.7382 20 1 10.9517 3.1059 4.5585 21 6 12.2359 3.7547 2.9703 22 7 12.3926 4.5967 1.9708 23 14 13.5690 2.5044 3.3562 24 1 13.1530 1.6804 4.5194 25 1 13.7796 1.6258 2.1777 26 1 14.8339 3.2129 3.6779 27 6 8.1667 3.4029 4.1733 28 6 7.8372 3.0996 2.7088 29 6 3.3589 1.2639 0.7214 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 2.8829 1.0773 -1.9564 34 1 1.2569 1.8013 -1.9565 35 1 2.9869 3.5014 -2.4703 36 1 2.1738 3.8629 -0.9290 37 1 4.6311 4.1235 -0.7215 38 1 4.8537 2.4340 -1.2348 39 1 6.0229 1.9952 0.8798 40 1 5.1943 2.2041 2.4413 41 1 6.8934 6.3057 1.9150 42 1 8.5339 5.6578 1.6663 43 1 7.0386 5.8699 4.3203 44 1 8.4592 6.8203 3.8216 45 1 9.7511 6.0054 5.7842 46 1 8.3326 5.0737 6.3209 47 1 9.8991 4.2591 6.0953 48 1 10.2185 5.3335 2.7187 49 1 13.2003 4.5677 1.4344 50 1 8.8152 2.6216 4.5697 51 1 7.2446 3.4401 4.7533 52 1 7.2420 2.1884 2.6495 53 1 8.7603 2.9704 2.1439 54 1 4.0244 0.5702 0.2078 55 1 3.2106 0.9322 1.7491 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281500286.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:26 Heat of formation + Delta-G solvation = -110.457406 kcal Electronic energy + Delta-G solvation = -31167.940268 eV Core-core repulsion = 27203.332789 eV Total energy + Delta-G solvation = -3964.607478 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.45609 -40.22342 -39.16830 -37.41785 -35.94467 -34.20630 -33.49173 -32.03568 -31.02801 -30.83488 -29.35793 -27.87610 -27.27903 -25.83276 -24.20262 -24.10044 -23.34991 -22.42928 -20.92411 -20.58991 -19.40696 -18.94646 -18.03781 -17.39371 -16.88903 -16.64547 -16.48554 -16.31312 -16.00052 -15.66983 -15.53412 -15.40425 -15.06891 -14.86487 -14.55493 -14.38298 -14.20343 -14.04006 -13.85616 -13.50845 -13.21340 -13.18794 -12.95679 -12.87214 -12.73573 -12.66258 -12.57328 -12.52522 -12.39705 -12.08607 -12.03146 -11.94023 -11.92292 -11.79267 -11.52003 -11.40272 -11.34458 -11.27218 -11.04508 -10.85107 -10.51642 -10.35995 -9.51771 -8.87109 -7.84410 -5.09788 1.49340 1.51298 1.59047 1.72578 2.12004 2.62170 2.81649 3.50136 3.61047 3.67815 3.75938 3.86628 3.99763 4.03898 4.11109 4.11684 4.22227 4.24459 4.32126 4.34100 4.48093 4.50545 4.51430 4.53010 4.55611 4.66405 4.67847 4.70656 4.75180 4.78308 4.83200 4.84942 4.89395 4.92030 5.04470 5.05341 5.07747 5.08364 5.13903 5.20852 5.23784 5.26689 5.33822 5.39262 5.41276 5.48039 5.54792 5.60643 5.68227 5.74918 6.31871 6.37771 6.59268 7.27412 7.44816 8.21780 8.44630 9.39586 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016276 B = 0.002473 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.859976 B =11320.596428 C =11730.357594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.407 6.407 3 C 0.090 3.910 4 H 0.065 0.935 5 C -0.135 4.135 6 C -0.110 4.110 7 C -0.123 4.123 8 C -0.057 4.057 9 H 0.069 0.931 10 C -0.131 4.131 11 C 0.509 3.491 12 O -0.580 6.580 13 N -0.602 5.602 14 C 0.120 3.880 15 C -0.118 4.118 16 C 0.186 3.814 17 C -0.144 4.144 18 N -0.724 5.724 19 C -0.205 4.205 20 H 0.079 0.921 21 C -0.079 4.079 22 N -0.972 5.972 23 Si 0.957 3.043 24 H -0.264 1.264 25 H -0.301 1.301 26 H -0.304 1.304 27 C -0.129 4.129 28 C 0.120 3.880 29 C -0.106 4.106 30 H 0.046 0.954 31 H 0.095 0.905 32 H 0.048 0.952 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.103 0.897 40 H 0.116 0.884 41 H 0.080 0.920 42 H 0.046 0.954 43 H 0.083 0.917 44 H 0.070 0.930 45 H 0.038 0.962 46 H 0.067 0.933 47 H 0.042 0.958 48 H 0.370 0.630 49 H 0.244 0.756 50 H 0.067 0.933 51 H 0.077 0.923 52 H 0.104 0.896 53 H 0.051 0.949 54 H 0.071 0.929 55 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.666 -6.953 -0.588 24.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.326 6.326 3 C 0.032 3.968 4 H 0.083 0.917 5 C -0.172 4.172 6 C -0.147 4.147 7 C -0.160 4.160 8 C -0.076 4.076 9 H 0.087 0.913 10 C -0.170 4.170 11 C 0.299 3.701 12 O -0.461 6.461 13 N -0.334 5.334 14 C -0.003 4.003 15 C -0.157 4.157 16 C 0.096 3.904 17 C -0.203 4.203 18 N -0.364 5.364 19 C -0.337 4.337 20 H 0.097 0.903 21 C -0.271 4.271 22 N -0.624 5.624 23 Si 0.788 3.212 24 H -0.189 1.189 25 H -0.229 1.229 26 H -0.232 1.232 27 C -0.169 4.169 28 C -0.002 4.002 29 C -0.143 4.143 30 H 0.065 0.935 31 H 0.114 0.886 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.121 0.879 40 H 0.134 0.866 41 H 0.099 0.901 42 H 0.065 0.935 43 H 0.101 0.899 44 H 0.088 0.912 45 H 0.057 0.943 46 H 0.086 0.914 47 H 0.061 0.939 48 H 0.203 0.797 49 H 0.053 0.947 50 H 0.085 0.915 51 H 0.095 0.905 52 H 0.123 0.877 53 H 0.069 0.931 54 H 0.090 0.910 55 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -23.792 -6.782 -0.711 24.750 hybrid contribution 1.455 0.164 -0.391 1.516 sum -22.337 -6.618 -1.103 23.322 Atomic orbital electron populations 1.22943 0.79976 1.03627 1.00602 1.87874 1.21031 1.28493 1.95207 1.22145 0.94928 0.84066 0.95647 0.91733 1.21991 1.01352 0.96875 0.97018 1.21408 0.96293 0.96387 1.00652 1.21703 0.97630 1.01614 0.95051 1.20735 0.94730 0.96298 0.95866 0.91261 1.21788 0.98149 0.92766 1.04321 1.21203 0.79942 0.92422 0.76488 1.90606 1.59975 1.45966 1.49572 1.48185 1.19902 1.08425 1.56859 1.21349 0.97754 0.84101 0.97106 1.21990 0.99651 0.98820 0.95217 1.19876 0.85974 0.93537 0.90965 1.22137 1.00656 1.00599 0.96926 1.42697 1.16604 1.40614 1.36498 1.19462 0.95564 1.08940 1.09767 0.90342 1.25354 1.00830 1.01689 0.99205 1.69816 1.28160 1.41394 1.23029 0.85293 0.79766 0.78938 0.77157 1.18873 1.22881 1.23241 1.22216 1.00121 0.98904 0.95643 1.21653 0.95625 0.88335 0.94599 1.21581 0.95186 0.96237 1.01332 0.93492 0.88638 0.93332 0.91688 0.91306 0.91480 0.92048 0.92283 0.92384 0.87889 0.86557 0.90149 0.93543 0.89892 0.91156 0.94306 0.91411 0.93918 0.79726 0.94679 0.91477 0.90493 0.87749 0.93081 0.91029 0.90384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.82 113.37 1.23 1.53 16 2 O -0.41 -7.53 10.35 -148.98 -1.54 -9.07 16 3 C 0.09 1.52 2.61 30.60 0.08 1.60 16 4 H 0.06 1.02 7.79 -2.39 -0.02 1.00 16 5 C -0.13 -2.24 5.54 30.60 0.17 -2.07 16 6 C -0.11 -2.03 5.92 30.59 0.18 -1.85 16 7 C -0.12 -2.71 4.94 30.59 0.15 -2.56 16 8 C -0.06 -1.14 1.84 -10.79 -0.02 -1.16 16 9 H 0.07 1.52 7.96 -2.39 -0.02 1.50 16 10 C -0.13 -2.69 3.52 29.85 0.11 -2.58 16 11 C 0.51 14.73 7.42 87.66 0.65 15.38 16 12 O -0.58 -20.09 13.38 -3.04 -0.04 -20.13 16 13 N -0.60 -18.35 2.97 -819.01 -2.43 -20.79 16 14 C 0.12 4.00 6.16 86.36 0.53 4.53 16 15 C -0.12 -3.64 4.96 30.67 0.15 -3.49 16 16 C 0.19 6.40 0.74 3.63 0.00 6.40 16 17 C -0.14 -4.66 8.44 71.98 0.61 -4.05 16 18 N -0.72 -32.54 4.14 -303.21 -1.26 -33.79 16 19 C -0.21 -10.27 8.68 84.03 0.73 -9.54 16 20 H 0.08 3.77 6.70 -2.91 -0.02 3.75 16 21 C -0.08 -4.32 5.50 84.86 0.47 -3.86 16 22 N -0.97 -57.69 13.06 21.65 0.28 -57.41 16 23 Si 0.96 44.75 29.55 68.60 2.03 46.78 16 24 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 25 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 26 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 27 C -0.13 -3.82 4.70 30.66 0.14 -3.68 16 28 C 0.12 3.54 6.08 86.35 0.52 4.07 16 29 C -0.11 -1.80 4.85 30.59 0.15 -1.65 16 30 H 0.05 0.50 7.87 -2.39 -0.02 0.48 16 31 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.05 0.51 8.08 -2.39 -0.02 0.49 16 33 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.07 1.01 7.87 -2.39 -0.02 0.99 16 35 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 36 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.06 1.66 5.95 -2.39 -0.01 1.65 16 38 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 39 H 0.10 1.97 7.94 -2.39 -0.02 1.95 16 40 H 0.12 1.87 7.69 -2.39 -0.02 1.85 16 41 H 0.08 2.69 7.00 -2.39 -0.02 2.67 16 42 H 0.05 1.81 6.94 -2.39 -0.02 1.79 16 43 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 44 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 45 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.07 1.75 8.14 -2.39 -0.02 1.74 16 47 H 0.04 1.48 7.28 -2.39 -0.02 1.46 16 48 H 0.37 18.66 6.46 -92.71 -0.60 18.07 16 49 H 0.24 14.35 8.31 -92.71 -0.77 13.58 16 50 H 0.07 2.12 7.30 -2.39 -0.02 2.10 16 51 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 52 H 0.10 2.31 5.93 -2.39 -0.01 2.30 16 53 H 0.05 1.92 7.74 -2.39 -0.02 1.91 16 54 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 55 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 Total: -1.00 -64.03 410.03 3.14 -60.89 By element: Atomic # 1 Polarization: 36.25 SS G_CDS: 0.25 Total: 36.50 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: 5.85 Total: -2.98 kcal Atomic # 7 Polarization: -108.58 SS G_CDS: -3.41 Total: -111.99 kcal Atomic # 8 Polarization: -27.62 SS G_CDS: -1.58 Total: -29.20 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -64.03 3.14 -60.89 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281500286.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.571 kcal (2) G-P(sol) polarization free energy of solvation -64.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds