Wall clock time and date at job start Tue Mar 31 2020 21:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47033 * 2 1 4 4 C 1.53001 * 109.46921 * 120.00089 * 2 1 3 5 5 C 1.52992 * 109.47412 * 59.99898 * 4 2 1 6 6 C 1.53005 * 109.47245 * 59.99885 * 5 4 2 7 7 C 1.53001 * 109.47010 * 300.00362 * 6 5 4 8 8 C 1.52998 * 109.47071 * 239.99973 * 2 1 3 9 9 H 1.08999 * 109.47429 * 180.02562 * 8 2 1 10 10 C 1.53001 * 109.47153 * 60.00258 * 8 2 1 11 11 C 1.50703 * 109.46852 * 175.00244 * 10 8 2 12 12 O 1.21275 * 120.00127 * 359.97438 * 11 10 8 13 13 N 1.34782 * 119.99687 * 180.02562 * 11 10 8 14 14 C 1.46499 * 120.00097 * 174.77670 * 13 11 10 15 15 C 1.53001 * 112.94623 * 292.58816 * 14 13 11 16 16 C 1.53000 * 109.46752 * 304.58028 * 15 14 13 17 17 O 1.42897 * 109.47199 * 185.00127 * 16 15 14 18 18 C 1.53944 * 113.74299 * 160.84852 * 14 13 11 19 19 N 1.47578 * 86.11634 * 222.05088 * 18 14 13 20 20 C 1.36942 * 134.48978 * 204.64112 * 19 18 14 21 21 H 1.08002 * 119.99813 * 173.98451 * 20 19 18 22 22 C 1.38810 * 120.00248 * 353.98545 * 20 19 18 23 23 N 1.31620 * 119.99498 * 5.04311 * 22 20 19 24 24 Si 1.86793 * 120.00130 * 185.04374 * 22 20 19 25 25 H 1.48496 * 109.47235 * 94.99270 * 24 22 20 26 26 H 1.48500 * 109.47155 * 214.99399 * 24 22 20 27 27 H 1.48498 * 109.47207 * 334.99015 * 24 22 20 28 28 C 1.47577 * 91.01874 * 24.64005 * 19 18 14 29 29 H 1.08998 * 109.46968 * 300.00059 * 1 2 3 30 30 H 1.09000 * 109.47095 * 60.00078 * 1 2 3 31 31 H 1.08994 * 109.47587 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46815 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47116 * 299.99909 * 3 2 1 34 34 H 1.08998 * 109.47291 * 60.00139 * 3 2 1 35 35 H 1.09006 * 109.46978 * 299.99450 * 4 2 1 36 36 H 1.08999 * 109.46734 * 180.02562 * 4 2 1 37 37 H 1.09000 * 109.47188 * 179.97438 * 5 4 2 38 38 H 1.09002 * 109.47220 * 300.00361 * 5 4 2 39 39 H 1.08999 * 109.46912 * 59.99689 * 6 5 4 40 40 H 1.08997 * 109.46952 * 180.02562 * 6 5 4 41 41 H 1.09003 * 109.47271 * 299.99936 * 7 6 5 42 42 H 1.08998 * 109.47179 * 179.97438 * 7 6 5 43 43 H 1.09007 * 109.46950 * 294.99920 * 10 8 2 44 44 H 1.08996 * 109.47141 * 54.99820 * 10 8 2 45 45 H 0.96999 * 120.00045 * 354.77642 * 13 11 10 46 46 H 1.08997 * 109.47445 * 64.57638 * 15 14 13 47 47 H 1.08993 * 109.46900 * 184.58482 * 15 14 13 48 48 H 1.09000 * 109.47320 * 305.00501 * 16 15 14 49 49 H 1.09009 * 109.47258 * 65.00344 * 16 15 14 50 50 H 0.96707 * 114.00146 * 180.02562 * 17 16 15 51 51 H 1.09004 * 113.76818 * 336.34834 * 18 14 13 52 52 H 1.08999 * 113.76577 * 107.74776 * 18 14 13 53 53 H 0.97006 * 119.99635 * 179.97438 * 23 22 20 54 54 H 1.09004 * 113.77155 * 221.05822 * 28 19 18 55 55 H 1.09006 * 113.76641 * 89.65928 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.5300 -2.1637 1.2493 6 6 2.0400 -2.8850 0.0000 7 6 1.5300 -2.1638 -1.2492 8 6 2.0400 -0.7212 -1.2492 9 1 3.1300 -0.7217 -1.2490 10 6 1.5300 0.0000 -2.4985 11 6 2.1309 -0.6354 -3.7258 12 8 2.8924 -1.5725 -3.6124 13 7 1.8228 -0.1615 -4.9494 14 6 2.4930 -0.7024 -6.1345 15 6 3.9824 -0.3561 -6.1877 16 6 4.1567 1.1611 -6.0953 17 8 5.5366 1.4930 -6.2617 18 6 1.7429 -0.4275 -7.4504 19 7 2.0767 -1.8182 -7.8143 20 6 2.2205 -2.4925 -8.9975 21 1 2.5714 -3.5139 -8.9977 22 6 1.9154 -1.8632 -10.1965 23 7 1.5834 -0.5895 -10.2053 24 14 1.9759 -2.8238 -11.7974 25 1 0.6175 -3.3268 -12.1244 26 1 2.4514 -1.9367 -12.8893 27 1 2.9068 -3.9714 -11.6511 28 6 2.1932 -2.1905 -6.3910 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 -0.2074 2.1393 36 1 3.1299 -0.7209 1.2494 37 1 1.8937 -2.6776 2.1391 38 1 0.4399 -2.1637 1.2492 39 1 3.1299 -2.8850 0.0000 40 1 1.6762 -3.9125 -0.0001 41 1 0.4400 -2.1637 -1.2493 42 1 1.8937 -2.6773 -2.1392 43 1 0.4436 -0.0769 -2.5444 44 1 1.8184 1.0503 -2.4548 45 1 1.1573 0.5376 -5.0453 46 1 4.4962 -0.8323 -5.3527 47 1 4.4052 -0.7139 -7.1263 48 1 3.5702 1.6425 -6.8778 49 1 3.8148 1.5074 -5.1199 50 1 5.7216 2.4410 -6.2142 51 1 0.6751 -0.2520 -7.3190 52 1 2.2235 0.3194 -8.0822 53 1 1.3706 -0.1496 -11.0433 54 1 3.0334 -2.8512 -6.1770 55 1 1.2577 -2.5328 -5.9484 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282544991.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:05 Heat of formation + Delta-G solvation = -84.340020 kcal Electronic energy + Delta-G solvation = -31687.055692 eV Core-core repulsion = 27723.580748 eV Total energy + Delta-G solvation = -3963.474943 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.67123 -40.68453 -39.00356 -37.70496 -35.23496 -34.35059 -33.74610 -33.10093 -31.83427 -29.24300 -28.58040 -28.05438 -26.85173 -26.62729 -25.02195 -23.47865 -23.00714 -21.91383 -21.12608 -20.10598 -18.97352 -18.77645 -18.40610 -18.00024 -17.17026 -16.67699 -16.43552 -16.06557 -16.00890 -15.61700 -15.57435 -15.31850 -15.01415 -14.93434 -14.53968 -14.40958 -14.01328 -13.80745 -13.57222 -13.45577 -13.34581 -13.17022 -12.94905 -12.81638 -12.70306 -12.63163 -12.58088 -12.40522 -12.24908 -12.18908 -12.04417 -12.00173 -11.83243 -11.74157 -11.52546 -11.37904 -11.02893 -10.93936 -10.91136 -10.82659 -10.70099 -10.34919 -9.93292 -8.95950 -7.95995 -5.28124 1.44638 1.45730 1.54902 1.84065 2.22711 2.50162 3.15752 3.23742 3.40395 3.60893 3.72111 3.78783 3.84261 4.07265 4.14657 4.22626 4.26972 4.31379 4.32488 4.44209 4.49413 4.50591 4.55182 4.62193 4.69495 4.71149 4.72759 4.78748 4.86159 4.86766 4.91808 4.96294 5.04792 5.07948 5.12927 5.13927 5.17671 5.19046 5.20957 5.26097 5.31745 5.33205 5.35173 5.40729 5.46568 5.50215 5.62545 5.66862 5.76651 5.81242 5.88811 6.76274 6.89188 6.91886 7.48490 7.54860 8.49524 9.21360 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016884 B = 0.002779 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.932570 B =10073.482661 C =10845.125785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.055 4.055 3 C -0.145 4.145 4 C -0.106 4.106 5 C -0.117 4.117 6 C -0.117 4.117 7 C -0.120 4.120 8 C -0.052 4.052 9 H 0.053 0.947 10 C -0.132 4.132 11 C 0.508 3.492 12 O -0.569 6.569 13 N -0.710 5.710 14 C 0.157 3.843 15 C -0.088 4.088 16 C 0.094 3.906 17 O -0.594 6.594 18 C 0.176 3.824 19 N -0.633 5.633 20 C -0.239 4.239 21 H 0.077 0.923 22 C -0.057 4.057 23 N -0.945 5.945 24 Si 0.976 3.024 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.272 1.272 28 C 0.129 3.871 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.047 0.953 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.052 0.948 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.046 0.954 40 H 0.055 0.945 41 H 0.065 0.935 42 H 0.049 0.951 43 H 0.112 0.888 44 H 0.118 0.882 45 H 0.413 0.587 46 H 0.060 0.940 47 H 0.049 0.951 48 H 0.048 0.952 49 H 0.064 0.936 50 H 0.397 0.603 51 H 0.033 0.967 52 H 0.054 0.946 53 H 0.252 0.748 54 H 0.035 0.965 55 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.848 8.290 24.256 25.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.055 4.055 3 C -0.202 4.202 4 C -0.144 4.144 5 C -0.154 4.154 6 C -0.154 4.154 7 C -0.157 4.157 8 C -0.071 4.071 9 H 0.071 0.929 10 C -0.172 4.172 11 C 0.296 3.704 12 O -0.447 6.447 13 N -0.363 5.363 14 C 0.069 3.931 15 C -0.127 4.127 16 C 0.016 3.984 17 O -0.402 6.402 18 C 0.050 3.950 19 N -0.360 5.360 20 C -0.368 4.368 21 H 0.095 0.905 22 C -0.251 4.251 23 N -0.593 5.593 24 Si 0.804 3.196 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.197 1.197 28 C 0.003 3.997 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.084 0.916 42 H 0.068 0.932 43 H 0.130 0.870 44 H 0.136 0.864 45 H 0.250 0.750 46 H 0.078 0.922 47 H 0.067 0.933 48 H 0.066 0.934 49 H 0.082 0.918 50 H 0.247 0.753 51 H 0.051 0.949 52 H 0.072 0.928 53 H 0.061 0.939 54 H 0.054 0.946 55 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -2.241 6.947 23.949 25.037 hybrid contribution -0.260 -0.026 -1.416 1.440 sum -2.501 6.921 22.533 23.704 Atomic orbital electron populations 1.22033 0.93859 1.02114 1.02386 1.20498 0.96254 0.95102 0.93627 1.21954 1.00709 0.94943 1.02609 1.21574 1.00084 0.95281 0.97425 1.21565 1.01196 0.95713 0.96950 1.21479 0.99989 0.98813 0.95158 1.21685 1.00332 0.95786 0.97938 1.20806 0.99377 0.94196 0.92671 0.92858 1.21941 1.02927 1.01850 0.90440 1.21409 0.80888 0.82914 0.85152 1.90663 1.37914 1.29217 1.86928 1.46028 1.43255 1.41994 1.05072 1.22113 0.92135 0.93817 0.85008 1.21172 0.93843 0.96292 1.01361 1.21948 0.82099 0.94272 1.00059 1.86444 1.26195 1.31260 1.96339 1.22351 0.95678 0.87971 0.89021 1.45968 1.81441 1.08361 1.00197 1.19300 1.37657 0.96416 0.83393 0.90514 1.25568 1.01609 0.97321 1.00574 1.69954 1.53151 1.10050 1.26110 0.85097 0.77656 0.77715 0.79095 1.21214 1.21644 1.19725 1.22818 0.97505 0.95353 0.84041 0.91953 0.91797 0.92451 0.93356 0.91498 0.91744 0.90849 0.92923 0.91843 0.91129 0.93493 0.92598 0.91642 0.93235 0.86972 0.86433 0.74975 0.92176 0.93250 0.93420 0.91788 0.75350 0.94891 0.92802 0.93922 0.94646 0.94487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 7.43 71.98 0.53 -1.18 16 2 C -0.05 -0.75 0.54 -52.18 -0.03 -0.78 16 3 C -0.15 -1.69 8.13 71.98 0.59 -1.11 16 4 C -0.11 -1.48 4.73 30.59 0.14 -1.34 16 5 C -0.12 -1.75 5.65 30.59 0.17 -1.58 16 6 C -0.12 -2.32 5.92 30.60 0.18 -2.14 16 7 C -0.12 -2.65 4.67 30.59 0.14 -2.51 16 8 C -0.05 -0.99 1.14 -10.79 -0.01 -1.00 16 9 H 0.05 1.29 7.95 -2.39 -0.02 1.27 16 10 C -0.13 -2.32 4.46 29.85 0.13 -2.19 16 11 C 0.51 13.84 7.21 87.66 0.63 14.47 16 12 O -0.57 -20.39 12.44 -3.01 -0.04 -20.43 16 13 N -0.71 -19.62 4.64 -427.56 -1.98 -21.60 16 14 C 0.16 5.95 0.68 5.36 0.00 5.95 16 15 C -0.09 -3.42 4.86 30.59 0.15 -3.27 16 16 C 0.09 2.89 6.77 71.98 0.49 3.37 16 17 O -0.59 -18.11 13.66 -148.98 -2.03 -20.15 16 18 C 0.18 8.01 6.57 86.48 0.57 8.58 16 19 N -0.63 -33.44 3.54 -716.19 -2.54 -35.97 16 20 C -0.24 -13.87 10.70 84.03 0.90 -12.97 16 21 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 22 C -0.06 -3.25 5.50 84.86 0.47 -2.79 16 23 N -0.94 -55.77 11.49 21.65 0.25 -55.52 16 24 Si 0.98 46.22 29.56 68.60 2.03 48.25 16 25 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 26 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 27 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 28 C 0.13 5.84 7.37 86.48 0.64 6.48 16 29 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.06 0.66 6.54 -2.39 -0.02 0.64 16 31 H 0.06 0.74 4.81 -2.39 -0.01 0.73 16 32 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.07 0.67 6.32 -2.39 -0.02 0.65 16 34 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 36 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.07 0.97 6.43 -2.39 -0.02 0.95 16 39 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.06 1.30 6.43 -2.39 -0.02 1.28 16 42 H 0.05 1.46 5.95 -2.39 -0.01 1.45 16 43 H 0.11 1.57 6.71 -2.38 -0.02 1.55 16 44 H 0.12 1.52 6.17 -2.39 -0.01 1.50 16 45 H 0.41 8.67 8.72 -92.71 -0.81 7.86 16 46 H 0.06 2.45 7.29 -2.39 -0.02 2.44 16 47 H 0.05 2.31 8.02 -2.39 -0.02 2.29 16 48 H 0.05 1.48 7.45 -2.39 -0.02 1.47 16 49 H 0.06 1.61 7.84 -2.38 -0.02 1.60 16 50 H 0.40 7.41 9.12 -74.05 -0.68 6.73 16 51 H 0.03 1.49 8.14 -2.38 -0.02 1.47 16 52 H 0.05 2.71 6.74 -2.39 -0.02 2.69 16 53 H 0.25 14.36 8.31 -92.70 -0.77 13.59 16 54 H 0.04 1.69 8.10 -2.38 -0.02 1.67 16 55 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 Total: -1.00 -73.16 407.14 0.79 -72.38 By element: Atomic # 1 Polarization: 27.63 SS G_CDS: -0.60 Total: 27.03 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: 5.70 Total: 6.01 kcal Atomic # 7 Polarization: -108.82 SS G_CDS: -4.27 Total: -113.09 kcal Atomic # 8 Polarization: -38.50 SS G_CDS: -2.07 Total: -40.58 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -73.16 0.79 -72.38 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282544991.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.962 kcal (2) G-P(sol) polarization free energy of solvation -73.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds