Wall clock time and date at job start Tue Mar 31 2020 21:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 110.05455 * 2 1 4 4 C 1.53873 * 110.03393 * 238.58153 * 2 1 3 5 5 C 1.54262 * 106.60112 * 240.71234 * 4 2 1 6 6 C 1.54893 * 104.19569 * 336.39047 * 5 4 2 7 7 C 1.54263 * 110.03372 * 121.41200 * 2 1 3 8 8 H 1.09004 * 110.59827 * 24.16346 * 7 2 1 9 9 C 1.50696 * 110.48885 * 261.57656 * 7 2 1 10 10 O 1.21287 * 119.99790 * 272.03979 * 9 7 2 11 11 N 1.34775 * 120.00240 * 92.04211 * 9 7 2 12 12 C 1.46928 * 120.63078 * 5.61473 * 11 9 7 13 13 C 1.53190 * 108.77680 * 233.63727 * 12 11 9 14 14 C 1.53039 * 109.33817 * 305.37874 * 13 12 11 15 15 C 1.53037 * 109.53901 * 61.31565 * 14 13 12 16 16 H 1.09004 * 109.49827 * 58.65360 * 15 14 13 17 17 N 1.46503 * 109.49890 * 178.71503 * 15 14 13 18 18 C 1.36938 * 119.99710 * 59.94113 * 17 15 14 19 19 H 1.07998 * 120.00220 * 36.93169 * 18 17 15 20 20 C 1.38811 * 119.99856 * 216.93885 * 18 17 15 21 21 N 1.31620 * 119.99917 * 213.29791 * 20 18 17 22 22 Si 1.86799 * 120.00258 * 33.29289 * 20 18 17 23 23 H 1.48501 * 109.47007 * 90.70907 * 22 20 18 24 24 H 1.48506 * 109.46865 * 330.71077 * 22 20 18 25 25 H 1.48498 * 109.47526 * 210.71215 * 22 20 18 26 26 C 1.46496 * 120.00408 * 239.93748 * 17 15 14 27 27 C 1.53006 * 109.47255 * 274.67355 * 26 17 15 28 28 O 1.42895 * 109.47389 * 67.47250 * 27 26 17 29 29 C 1.46924 * 120.63061 * 185.64274 * 11 9 7 30 30 H 1.08999 * 109.47109 * 298.58498 * 1 2 3 31 31 H 1.08998 * 109.47283 * 58.58754 * 1 2 3 32 32 H 1.09005 * 109.46926 * 178.58366 * 1 2 3 33 33 H 1.08997 * 109.47116 * 180.31984 * 3 2 1 34 34 H 1.09004 * 109.46942 * 300.31186 * 3 2 1 35 35 H 1.08995 * 109.47493 * 60.31144 * 3 2 1 36 36 H 1.09004 * 110.03252 * 121.42524 * 4 2 1 37 37 H 1.09001 * 110.03214 * 0.02562 * 4 2 1 38 38 H 1.08999 * 110.49046 * 217.71188 * 5 4 2 39 39 H 1.09000 * 110.59917 * 95.11978 * 5 4 2 40 40 H 1.08998 * 110.75596 * 279.62803 * 6 5 4 41 41 H 1.08996 * 110.75626 * 156.25320 * 6 5 4 42 42 H 1.09007 * 109.58303 * 353.42062 * 12 11 9 43 43 H 1.09000 * 109.58579 * 113.84174 * 12 11 9 44 44 H 1.09000 * 109.50078 * 65.31340 * 13 12 11 45 45 H 1.08998 * 109.49865 * 185.38387 * 13 12 11 46 46 H 1.09007 * 109.43598 * 301.31395 * 14 13 12 47 47 H 1.08993 * 109.48715 * 181.35591 * 14 13 12 48 48 H 0.97001 * 119.99742 * 180.02562 * 21 20 18 49 49 H 1.09004 * 109.46990 * 34.66568 * 26 17 15 50 50 H 1.09001 * 109.47454 * 154.67146 * 26 17 15 51 51 H 1.08993 * 109.47095 * 187.48121 * 27 26 17 52 52 H 1.08997 * 109.46616 * 307.47512 * 27 26 17 53 53 H 0.96693 * 114.00544 * 179.97438 * 28 27 26 54 54 H 1.08994 * 109.58975 * 6.57683 * 29 11 9 55 55 H 1.09000 * 109.58554 * 246.15356 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0546 1.4373 0.0000 4 6 2.0571 -0.7536 -1.2337 5 6 2.8875 -1.9406 -0.7035 6 6 3.3137 -1.5006 0.7192 7 6 2.0584 -0.7553 1.2369 8 1 1.3152 -1.4658 1.5989 9 6 2.4334 0.2150 2.3271 10 8 3.5497 0.6882 2.3602 11 7 1.5284 0.5571 3.2655 12 6 0.2142 -0.0983 3.3121 13 6 -0.8749 0.9788 3.2927 14 6 -0.6267 1.9710 4.4311 15 6 0.7297 2.6509 4.2309 16 1 0.7416 3.1628 3.2686 17 7 0.9528 3.6227 5.3043 18 6 0.9795 3.2076 6.6090 19 1 1.4212 2.2556 6.8638 20 6 0.4388 4.0103 7.6039 21 7 0.9733 4.0176 8.8067 22 14 -1.0475 5.0804 7.2359 23 1 -2.2891 4.3238 7.5378 24 1 -1.0381 5.4642 5.8013 25 1 -0.9968 6.3039 8.0759 26 6 1.1474 5.0385 4.9820 27 6 2.6213 5.2898 4.6573 28 8 2.9604 4.6264 3.4380 29 6 1.8370 1.5928 4.2608 30 1 -0.3633 0.4917 0.9024 31 1 -0.3634 0.5356 -0.8770 32 1 -0.3633 -1.0274 -0.0254 33 1 3.1445 1.4262 -0.0057 34 1 1.6920 1.9564 -0.8872 35 1 1.7012 1.9531 0.8927 36 1 2.6866 -0.0953 -1.8325 37 1 1.2229 -1.1189 -1.8327 38 1 3.7638 -2.1037 -1.3309 39 1 2.2792 -2.8439 -0.6572 40 1 4.1710 -0.8289 0.6752 41 1 3.5326 -2.3677 1.3423 42 1 0.0997 -0.7494 2.4454 43 1 0.1311 -0.6857 4.2265 44 1 -0.8483 1.5060 2.3390 45 1 -1.8510 0.5117 3.4231 46 1 -0.6293 1.4393 5.3827 47 1 -1.4138 2.7249 4.4345 48 1 0.5952 4.5784 9.5021 49 1 0.5354 5.3022 4.1194 50 1 0.8542 5.6492 5.8359 51 1 2.7918 6.3607 4.5480 52 1 3.2423 4.9038 5.4657 53 1 3.8820 4.7429 3.1698 54 1 2.7931 2.0575 4.0202 55 1 1.8862 1.1433 5.2526 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316743482.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:35:05 Heat of formation + Delta-G solvation = -93.362369 kcal Electronic energy + Delta-G solvation = -33161.111226 eV Core-core repulsion = 29197.245044 eV Total energy + Delta-G solvation = -3963.866182 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.84368 -39.69676 -38.49623 -37.74310 -36.39784 -33.97454 -33.12371 -33.09242 -31.79276 -30.21157 -29.09280 -28.17781 -26.53691 -25.97894 -25.21005 -23.77177 -22.86826 -22.14097 -21.14082 -20.47008 -18.94690 -18.54167 -18.26831 -18.17503 -16.89302 -16.82617 -16.63901 -16.44262 -15.79805 -15.58218 -15.26027 -15.18852 -14.92711 -14.75844 -14.51502 -14.35418 -14.20082 -14.16752 -13.91107 -13.86236 -13.63815 -13.44857 -13.24947 -12.78968 -12.77363 -12.66293 -12.36381 -12.22381 -12.13361 -12.05197 -11.93529 -11.86780 -11.71494 -11.61798 -11.56105 -11.35638 -11.29150 -11.26556 -11.15474 -10.79745 -10.61381 -10.48198 -9.61668 -8.67819 -8.22900 -5.47348 1.35608 1.45392 1.53081 1.72800 2.09720 2.46200 2.96765 3.37229 3.45664 3.55136 3.61931 3.69890 3.94477 4.07400 4.11190 4.18395 4.29607 4.35357 4.41222 4.41817 4.44320 4.47004 4.49519 4.51147 4.53811 4.59673 4.67073 4.76523 4.79820 4.81544 4.91880 4.94672 4.97441 5.01325 5.01880 5.04493 5.11247 5.12428 5.16497 5.19834 5.22651 5.26724 5.37925 5.41056 5.49208 5.50613 5.56871 5.60959 5.64349 5.96124 6.23574 6.60594 6.92764 7.02140 7.31964 7.67723 8.14433 8.97340 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018025 B = 0.003732 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.067136 B = 7501.291343 C = 7882.792932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.047 4.047 3 C -0.136 4.136 4 C -0.111 4.111 5 C -0.114 4.114 6 C -0.113 4.113 7 C -0.105 4.105 8 H 0.117 0.883 9 C 0.520 3.480 10 O -0.587 6.587 11 N -0.607 5.607 12 C 0.099 3.901 13 C -0.123 4.123 14 C -0.126 4.126 15 C 0.183 3.817 16 H 0.056 0.944 17 N -0.599 5.599 18 C -0.253 4.253 19 H 0.037 0.963 20 C -0.003 4.003 21 N -0.931 5.931 22 Si 0.910 3.090 23 H -0.293 1.293 24 H -0.242 1.242 25 H -0.300 1.300 26 C 0.145 3.855 27 C 0.065 3.935 28 O -0.575 6.575 29 C 0.126 3.874 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.039 0.961 34 H 0.067 0.933 35 H 0.031 0.969 36 H 0.061 0.939 37 H 0.089 0.911 38 H 0.072 0.928 39 H 0.086 0.914 40 H 0.054 0.946 41 H 0.071 0.929 42 H 0.118 0.882 43 H 0.068 0.932 44 H 0.073 0.927 45 H 0.101 0.899 46 H 0.049 0.951 47 H 0.050 0.950 48 H 0.262 0.738 49 H 0.054 0.946 50 H 0.056 0.944 51 H 0.057 0.943 52 H 0.023 0.977 53 H 0.381 0.619 54 H 0.059 0.941 55 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.337 -10.208 -21.814 24.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.048 4.048 3 C -0.194 4.194 4 C -0.148 4.148 5 C -0.152 4.152 6 C -0.151 4.151 7 C -0.126 4.126 8 H 0.135 0.865 9 C 0.310 3.690 10 O -0.467 6.467 11 N -0.339 5.339 12 C -0.023 4.023 13 C -0.161 4.161 14 C -0.165 4.165 15 C 0.076 3.924 16 H 0.074 0.926 17 N -0.320 5.320 18 C -0.383 4.383 19 H 0.055 0.945 20 C -0.201 4.201 21 N -0.573 5.573 22 Si 0.736 3.264 23 H -0.221 1.221 24 H -0.165 1.165 25 H -0.227 1.227 26 C 0.020 3.980 27 C -0.015 4.015 28 O -0.381 6.381 29 C 0.001 3.999 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.058 0.942 34 H 0.086 0.914 35 H 0.050 0.950 36 H 0.080 0.920 37 H 0.107 0.893 38 H 0.091 0.909 39 H 0.104 0.896 40 H 0.073 0.927 41 H 0.089 0.911 42 H 0.136 0.864 43 H 0.086 0.914 44 H 0.092 0.908 45 H 0.119 0.881 46 H 0.067 0.933 47 H 0.069 0.931 48 H 0.071 0.929 49 H 0.072 0.928 50 H 0.074 0.926 51 H 0.075 0.925 52 H 0.041 0.959 53 H 0.229 0.771 54 H 0.078 0.922 55 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -3.393 -10.056 -21.595 24.062 hybrid contribution 0.402 1.245 1.305 1.848 sum -2.991 -8.811 -20.289 22.321 Atomic orbital electron populations 1.22171 0.92398 1.03382 1.02822 1.21047 0.96710 0.94017 0.93027 1.21919 1.00258 0.96227 1.00964 1.22278 1.00095 0.96579 0.95895 1.22322 1.00138 0.98455 0.94256 1.22445 0.95976 0.99064 0.97591 1.22458 1.00515 0.96461 0.93170 0.86505 1.21092 0.83793 0.82078 0.82014 1.90632 1.22823 1.57220 1.76065 1.48274 1.16422 1.38645 1.30556 1.22125 0.80876 0.95408 1.03878 1.21950 0.99324 0.96458 0.98386 1.21910 0.97263 0.98512 0.98861 1.20551 0.92402 0.89153 0.90245 0.92558 1.44092 1.82956 1.03039 1.01962 1.18352 1.32201 1.05201 0.82498 0.94538 1.25908 0.99972 0.99697 0.94557 1.70163 1.39681 1.41995 1.05481 0.86400 0.82756 0.77850 0.79367 1.22119 1.16543 1.22692 1.21358 0.93125 0.85607 0.97954 1.22785 0.98349 0.94904 0.85464 1.86476 1.33350 1.76996 1.41305 1.21649 0.99619 0.88900 0.89746 0.92351 0.91460 0.90102 0.94171 0.91435 0.95012 0.92004 0.89254 0.90894 0.89572 0.92708 0.91058 0.86440 0.91357 0.90819 0.88108 0.93258 0.93122 0.92869 0.92814 0.92595 0.92462 0.95875 0.77141 0.92210 0.94687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 7.45 71.98 0.54 -1.55 16 2 C -0.05 -0.87 0.86 -51.46 -0.04 -0.91 16 3 C -0.14 -3.36 7.12 71.98 0.51 -2.85 16 4 C -0.11 -1.58 6.11 31.32 0.19 -1.38 16 5 C -0.11 -1.59 6.83 31.67 0.22 -1.37 16 6 C -0.11 -2.34 6.19 31.89 0.20 -2.14 16 7 C -0.11 -2.26 2.12 -10.47 -0.02 -2.29 16 8 H 0.12 1.93 5.81 -2.38 -0.01 1.92 16 9 C 0.52 16.56 4.80 87.66 0.42 16.98 16 10 O -0.59 -23.89 14.45 -3.05 -0.04 -23.94 16 11 N -0.61 -19.42 2.97 -818.90 -2.43 -21.86 16 12 C 0.10 2.31 5.70 86.36 0.49 2.80 16 13 C -0.12 -2.92 5.64 30.67 0.17 -2.75 16 14 C -0.13 -4.41 5.12 30.62 0.16 -4.25 16 15 C 0.18 7.39 2.25 45.07 0.10 7.49 16 16 H 0.06 2.30 7.67 -2.39 -0.02 2.28 16 17 N -0.60 -27.97 2.00 -677.58 -1.35 -29.32 16 18 C -0.25 -13.91 8.56 84.03 0.72 -13.20 16 19 H 0.04 2.27 6.89 -2.91 -0.02 2.25 16 20 C 0.00 -0.19 5.02 84.86 0.43 0.24 16 21 N -0.93 -56.70 13.97 21.65 0.30 -56.39 16 22 Si 0.91 43.59 26.39 68.60 1.81 45.40 16 23 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 24 H -0.24 -10.67 5.73 99.48 0.57 -10.10 16 25 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 26 C 0.15 6.26 4.25 86.38 0.37 6.62 16 27 C 0.06 2.51 7.38 71.98 0.53 3.04 16 28 O -0.58 -21.21 12.58 -148.98 -1.87 -23.08 16 29 C 0.13 5.17 5.75 86.36 0.50 5.67 16 30 H 0.06 0.93 4.38 -2.39 -0.01 0.92 16 31 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.04 1.16 7.63 -2.39 -0.02 1.14 16 34 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 35 H 0.03 0.95 7.05 -2.39 -0.02 0.94 16 36 H 0.06 0.95 7.67 -2.39 -0.02 0.93 16 37 H 0.09 0.90 7.67 -2.39 -0.02 0.88 16 38 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.05 1.47 7.26 -2.39 -0.02 1.45 16 41 H 0.07 1.37 8.14 -2.39 -0.02 1.36 16 42 H 0.12 1.92 4.02 -2.38 -0.01 1.91 16 43 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.07 1.66 6.45 -2.39 -0.02 1.65 16 45 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.05 1.94 7.70 -2.38 -0.02 1.92 16 47 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 48 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 49 H 0.05 2.16 8.02 -2.38 -0.02 2.14 16 50 H 0.06 2.54 4.49 -2.39 -0.01 2.53 16 51 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 52 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 53 H 0.38 10.94 9.12 -74.06 -0.68 10.26 16 54 H 0.06 2.82 6.70 -2.39 -0.02 2.80 16 55 H 0.03 1.63 6.80 -2.39 -0.02 1.61 16 Total: -1.00 -72.30 396.64 1.95 -70.35 By element: Atomic # 1 Polarization: 28.63 SS G_CDS: 0.07 Total: 28.70 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: 5.47 Total: 10.14 kcal Atomic # 7 Polarization: -104.09 SS G_CDS: -3.48 Total: -107.57 kcal Atomic # 8 Polarization: -45.10 SS G_CDS: -1.92 Total: -47.02 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 1.81 Total: 45.40 kcal Total: -72.30 1.95 -70.35 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316743482.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.008 kcal (2) G-P(sol) polarization free energy of solvation -72.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds