Wall clock time and date at job start Tue Mar 31 2020 21:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 110.05977 * 2 1 4 4 C 1.54086 * 110.15960 * 238.53339 * 2 1 3 5 5 C 1.54270 * 106.62198 * 240.87988 * 4 2 1 6 6 C 1.54887 * 104.19454 * 336.27890 * 5 4 2 7 7 C 1.54269 * 110.03258 * 121.41810 * 2 1 3 8 8 H 1.08991 * 110.48742 * 24.08206 * 7 2 1 9 9 C 1.50702 * 110.48618 * 261.56988 * 7 2 1 10 10 O 1.21285 * 120.00131 * 275.49795 * 9 7 2 11 11 N 1.34772 * 119.99931 * 95.48927 * 9 7 2 12 12 C 1.46929 * 120.62950 * 355.31642 * 11 9 7 13 13 C 1.53201 * 108.77275 * 126.40793 * 12 11 9 14 14 C 1.53037 * 109.31323 * 54.63540 * 13 12 11 15 15 C 1.53034 * 109.53882 * 298.63307 * 14 13 12 16 16 H 1.09005 * 109.50104 * 301.41289 * 15 14 13 17 17 N 1.46500 * 109.52695 * 181.33281 * 15 14 13 18 18 C 1.36937 * 119.99950 * 300.14339 * 17 15 14 19 19 H 1.07996 * 120.00446 * 322.72317 * 18 17 15 20 20 C 1.38821 * 119.99814 * 142.71877 * 18 17 15 21 21 N 1.31618 * 119.99750 * 337.16365 * 20 18 17 22 22 Si 1.86796 * 119.99723 * 157.16517 * 20 18 17 23 23 H 1.48495 * 109.47155 * 89.99914 * 22 20 18 24 24 H 1.48504 * 109.47023 * 210.00085 * 22 20 18 25 25 H 1.48504 * 109.47355 * 329.99945 * 22 20 18 26 26 C 1.46498 * 120.00077 * 120.14281 * 17 15 14 27 27 C 1.53002 * 109.47134 * 86.34399 * 26 17 15 28 28 O 1.42896 * 109.47260 * 65.00177 * 27 26 17 29 29 C 1.46923 * 120.63184 * 175.33256 * 11 9 7 30 30 H 1.09002 * 109.46860 * 298.58046 * 1 2 3 31 31 H 1.08992 * 109.47163 * 58.58050 * 1 2 3 32 32 H 1.09001 * 109.47108 * 178.58266 * 1 2 3 33 33 H 1.08993 * 109.47572 * 175.92721 * 3 2 1 34 34 H 1.08998 * 109.46901 * 295.92991 * 3 2 1 35 35 H 1.09007 * 109.46636 * 55.92086 * 3 2 1 36 36 H 1.09003 * 110.11545 * 121.53806 * 4 2 1 37 37 H 1.09002 * 109.97133 * 0.14282 * 4 2 1 38 38 H 1.09001 * 110.48392 * 217.60257 * 5 4 2 39 39 H 1.09002 * 110.59811 * 95.01394 * 5 4 2 40 40 H 1.09001 * 110.75792 * 279.62439 * 6 5 4 41 41 H 1.09003 * 110.75783 * 156.25635 * 6 5 4 42 42 H 1.08991 * 109.58687 * 6.62312 * 12 11 9 43 43 H 1.08992 * 109.58297 * 246.19392 * 12 11 9 44 44 H 1.09003 * 109.49279 * 174.58318 * 13 12 11 45 45 H 1.08996 * 109.49838 * 294.68070 * 13 12 11 46 46 H 1.09001 * 109.45965 * 58.65297 * 14 13 12 47 47 H 1.09001 * 109.46128 * 178.61204 * 14 13 12 48 48 H 0.97006 * 119.99590 * 180.02562 * 21 20 18 49 49 H 1.08998 * 109.47445 * 206.34084 * 26 17 15 50 50 H 1.09000 * 109.47218 * 326.34471 * 26 17 15 51 51 H 1.09002 * 109.47210 * 184.99848 * 27 26 17 52 52 H 1.09000 * 109.47361 * 304.99712 * 27 26 17 53 53 H 0.96701 * 113.99960 * 180.02562 * 28 27 26 54 54 H 1.09001 * 109.58699 * 353.37343 * 29 11 9 55 55 H 1.08993 * 109.59142 * 113.80225 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0548 1.4372 0.0000 4 6 2.0610 -0.7551 -1.2338 5 6 2.8884 -1.9434 -0.7015 6 6 3.3131 -1.5034 0.7215 7 6 2.0584 -0.7555 1.2369 8 1 1.3134 -1.4643 1.5980 9 6 2.4335 0.2148 2.3272 10 8 3.5287 0.7360 2.3248 11 7 1.5520 0.5036 3.3048 12 6 0.1871 -0.0390 3.2663 13 6 -0.0959 -0.7559 4.5904 14 6 0.1659 0.2051 5.7523 15 6 1.6346 0.6347 5.7401 16 1 2.2720 -0.2459 5.8203 17 7 1.8925 1.5295 6.8711 18 6 1.2026 2.7070 6.9836 19 1 0.9641 3.2799 6.0997 20 6 0.8095 3.1644 8.2340 21 7 0.6809 2.3180 9.2337 22 14 0.4633 4.9809 8.4976 23 1 -0.9693 5.2570 8.2210 24 1 0.7754 5.3455 9.9030 25 1 1.3087 5.7845 7.5784 26 6 2.8883 1.1645 7.8816 27 6 4.2725 1.6299 7.4250 28 8 4.2996 3.0574 7.3659 29 6 1.9374 1.3673 4.4292 30 1 -0.3633 0.4916 0.9025 31 1 -0.3633 0.5357 -0.8769 32 1 -0.3633 -1.0274 -0.0254 33 1 3.1422 1.4270 0.0730 34 1 1.7573 1.9326 -0.9242 35 1 1.6384 1.9760 0.8513 36 1 2.6928 -0.0984 -1.8319 37 1 1.2276 -1.1196 -1.8343 38 1 3.7654 -2.1083 -1.3275 39 1 2.2783 -2.8455 -0.6557 40 1 4.1718 -0.8333 0.6785 41 1 3.5294 -2.3705 1.3456 42 1 0.0982 -0.7461 2.4417 43 1 -0.5257 0.7744 3.1315 44 1 -1.1365 -1.0797 4.6135 45 1 0.5576 -1.6234 4.6813 46 1 -0.4704 1.0838 5.6472 47 1 -0.0584 -0.2948 6.6946 48 1 0.4059 2.6375 10.1074 49 1 2.6380 1.6436 8.8281 50 1 2.8937 0.0824 8.0123 51 1 5.0248 1.2813 8.1326 52 1 4.4857 1.2212 6.4373 53 1 5.1487 3.4233 7.0825 54 1 3.0033 1.5881 4.3718 55 1 1.3673 2.2954 4.3892 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316743489.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:35:10 Heat of formation + Delta-G solvation = -97.154834 kcal Electronic energy + Delta-G solvation = -32587.415162 eV Core-core repulsion = 28623.384526 eV Total energy + Delta-G solvation = -3964.030635 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.84441 -39.67719 -38.42479 -37.69130 -36.28315 -33.82696 -33.10954 -32.90656 -31.54600 -30.17660 -28.97787 -28.23913 -26.56906 -25.96514 -25.23603 -23.69008 -22.61919 -22.00116 -21.30088 -20.49602 -18.99212 -18.36452 -18.27414 -18.09524 -17.01366 -16.66679 -16.52613 -16.16191 -15.82776 -15.53961 -15.37890 -15.23988 -14.85507 -14.56006 -14.49157 -14.33310 -14.24233 -13.98204 -13.86677 -13.67498 -13.54880 -13.16540 -12.90176 -12.87004 -12.73444 -12.64806 -12.55930 -12.37638 -12.24895 -11.98641 -11.93379 -11.76711 -11.71055 -11.61986 -11.58415 -11.44698 -11.30455 -11.28813 -11.22520 -10.75371 -10.57017 -10.41414 -9.60962 -8.48101 -7.78007 -5.32959 1.42348 1.47121 1.57215 1.68491 2.05796 2.56171 3.33197 3.42359 3.53157 3.59044 3.67835 3.74870 3.91796 4.08807 4.10548 4.20695 4.28215 4.32656 4.39299 4.42473 4.43843 4.47785 4.48787 4.49945 4.64330 4.65560 4.73599 4.76363 4.79629 4.85673 4.90252 4.94108 4.97336 4.99710 5.02741 5.04249 5.08927 5.14276 5.18272 5.22875 5.25121 5.35261 5.40029 5.46179 5.48203 5.56637 5.57565 5.63924 5.70346 5.78685 6.51773 6.56314 7.11692 7.23701 7.27086 7.91297 8.43054 9.20574 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016682 B = 0.003371 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.015447 B = 8304.494788 C = 8651.892978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.050 4.050 3 C -0.140 4.140 4 C -0.111 4.111 5 C -0.115 4.115 6 C -0.112 4.112 7 C -0.105 4.105 8 H 0.118 0.882 9 C 0.519 3.481 10 O -0.589 6.589 11 N -0.606 5.606 12 C 0.104 3.896 13 C -0.124 4.124 14 C -0.111 4.111 15 C 0.168 3.832 16 H 0.049 0.951 17 N -0.582 5.582 18 C -0.230 4.230 19 H 0.042 0.958 20 C -0.025 4.025 21 N -0.916 5.916 22 Si 0.943 3.057 23 H -0.284 1.284 24 H -0.295 1.295 25 H -0.284 1.284 26 C 0.143 3.857 27 C 0.068 3.932 28 O -0.573 6.573 29 C 0.124 3.876 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.042 0.958 34 H 0.069 0.931 35 H 0.028 0.972 36 H 0.062 0.938 37 H 0.089 0.911 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.054 0.946 41 H 0.072 0.928 42 H 0.118 0.882 43 H 0.070 0.930 44 H 0.097 0.903 45 H 0.069 0.931 46 H 0.044 0.956 47 H 0.040 0.960 48 H 0.247 0.753 49 H 0.066 0.934 50 H 0.046 0.954 51 H 0.048 0.952 52 H 0.025 0.975 53 H 0.374 0.626 54 H 0.052 0.948 55 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.402 -11.884 -19.972 23.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.051 4.051 3 C -0.197 4.197 4 C -0.148 4.148 5 C -0.152 4.152 6 C -0.150 4.150 7 C -0.126 4.126 8 H 0.136 0.864 9 C 0.310 3.690 10 O -0.470 6.470 11 N -0.338 5.338 12 C -0.018 4.018 13 C -0.162 4.162 14 C -0.151 4.151 15 C 0.060 3.940 16 H 0.067 0.933 17 N -0.302 5.302 18 C -0.360 4.360 19 H 0.060 0.940 20 C -0.222 4.222 21 N -0.561 5.561 22 Si 0.772 3.228 23 H -0.210 1.210 24 H -0.221 1.221 25 H -0.209 1.209 26 C 0.017 3.983 27 C -0.012 4.012 28 O -0.378 6.378 29 C -0.001 4.001 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.061 0.939 34 H 0.088 0.912 35 H 0.047 0.953 36 H 0.080 0.920 37 H 0.108 0.892 38 H 0.092 0.908 39 H 0.105 0.895 40 H 0.073 0.927 41 H 0.091 0.909 42 H 0.136 0.864 43 H 0.088 0.912 44 H 0.115 0.885 45 H 0.088 0.912 46 H 0.063 0.937 47 H 0.059 0.941 48 H 0.056 0.944 49 H 0.084 0.916 50 H 0.064 0.936 51 H 0.067 0.933 52 H 0.044 0.956 53 H 0.220 0.780 54 H 0.071 0.929 55 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.520 -11.656 -19.587 22.799 hybrid contribution 0.775 1.698 0.956 2.097 sum 0.255 -9.958 -18.631 21.126 Atomic orbital electron populations 1.22098 0.92349 1.03417 1.02532 1.21122 0.96676 0.94027 0.93242 1.21966 1.00495 0.96269 1.00996 1.22309 1.00109 0.96570 0.95817 1.22326 1.00183 0.98447 0.94236 1.22446 0.95857 0.99073 0.97634 1.22456 1.00640 0.96374 0.93103 0.86399 1.21130 0.83487 0.82042 0.82370 1.90631 1.24520 1.54928 1.76929 1.48313 1.13734 1.49170 1.22614 1.22146 0.81492 0.98821 0.99329 1.21933 1.03190 0.97838 0.93269 1.21736 0.97049 0.98554 0.97711 1.20712 0.95146 0.91244 0.86873 0.93290 1.43795 1.41422 1.20201 1.24761 1.18716 1.28683 0.96841 0.91773 0.94016 1.25496 0.99129 1.00014 0.97529 1.70120 1.50355 1.33582 1.02015 0.85685 0.77417 0.83291 0.76383 1.21044 1.22135 1.20931 1.20936 0.86162 0.96195 0.95051 1.22887 0.99215 0.81080 0.97995 1.86749 1.38767 1.21053 1.91197 1.21721 0.99227 0.92991 0.86165 0.92891 0.91376 0.89967 0.93912 0.91199 0.95252 0.91952 0.89235 0.90847 0.89529 0.92710 0.90911 0.86375 0.91166 0.88455 0.91227 0.93679 0.94119 0.94359 0.91574 0.93561 0.93350 0.95630 0.78005 0.92894 0.93732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 7.45 71.98 0.54 -1.42 16 2 C -0.05 -0.89 0.87 -51.38 -0.04 -0.93 16 3 C -0.14 -3.33 7.06 71.98 0.51 -2.83 16 4 C -0.11 -1.50 6.12 31.39 0.19 -1.31 16 5 C -0.11 -1.52 6.83 31.67 0.22 -1.31 16 6 C -0.11 -2.25 6.22 31.89 0.20 -2.05 16 7 C -0.10 -2.19 2.10 -10.46 -0.02 -2.21 16 8 H 0.12 1.88 5.83 -2.39 -0.01 1.87 16 9 C 0.52 16.09 4.99 87.66 0.44 16.53 16 10 O -0.59 -23.40 14.12 -3.04 -0.04 -23.44 16 11 N -0.61 -18.96 2.97 -818.91 -2.43 -21.39 16 12 C 0.10 2.41 5.07 86.36 0.44 2.84 16 13 C -0.12 -3.10 6.08 30.67 0.19 -2.91 16 14 C -0.11 -4.14 5.11 30.62 0.16 -3.99 16 15 C 0.17 6.97 2.78 45.07 0.13 7.09 16 16 H 0.05 2.00 7.84 -2.38 -0.02 1.98 16 17 N -0.58 -28.79 2.33 -677.59 -1.58 -30.37 16 18 C -0.23 -12.64 7.90 84.04 0.66 -11.98 16 19 H 0.04 2.38 6.77 -2.91 -0.02 2.36 16 20 C -0.02 -1.41 4.88 84.86 0.41 -0.99 16 21 N -0.92 -53.79 11.60 21.65 0.25 -53.54 16 22 Si 0.94 46.93 29.61 68.60 2.03 48.96 16 23 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 24 H -0.29 -14.74 7.11 99.48 0.71 -14.03 16 25 H -0.28 -14.22 7.11 99.48 0.71 -13.52 16 26 C 0.14 6.86 5.61 86.38 0.48 7.34 16 27 C 0.07 2.80 7.39 71.98 0.53 3.34 16 28 O -0.57 -25.21 13.31 -148.98 -1.98 -27.19 16 29 C 0.12 4.99 5.75 86.37 0.50 5.49 16 30 H 0.05 0.81 6.09 -2.39 -0.01 0.80 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.04 1.22 7.24 -2.39 -0.02 1.20 16 34 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.03 0.83 7.30 -2.38 -0.02 0.81 16 36 H 0.06 0.92 7.68 -2.39 -0.02 0.90 16 37 H 0.09 0.85 7.68 -2.39 -0.02 0.83 16 38 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.05 1.42 7.28 -2.39 -0.02 1.41 16 41 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.12 1.89 4.09 -2.39 -0.01 1.88 16 43 H 0.07 1.64 7.98 -2.39 -0.02 1.62 16 44 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.04 1.88 7.70 -2.39 -0.02 1.86 16 47 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 48 H 0.25 14.19 8.31 -92.70 -0.77 13.42 16 49 H 0.07 3.68 5.60 -2.39 -0.01 3.67 16 50 H 0.05 2.06 8.00 -2.39 -0.02 2.04 16 51 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 52 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 53 H 0.37 12.18 9.12 -74.06 -0.68 11.50 16 54 H 0.05 2.42 7.03 -2.39 -0.02 2.40 16 55 H 0.04 1.99 6.80 -2.39 -0.02 1.97 16 Total: -1.00 -72.40 405.38 1.96 -70.44 By element: Atomic # 1 Polarization: 25.63 SS G_CDS: 0.19 Total: 25.83 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: 5.52 Total: 10.71 kcal Atomic # 7 Polarization: -101.54 SS G_CDS: -3.76 Total: -105.31 kcal Atomic # 8 Polarization: -48.61 SS G_CDS: -2.03 Total: -50.63 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.96 kcal Total: -72.40 1.96 -70.44 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316743489.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.712 kcal (2) G-P(sol) polarization free energy of solvation -72.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds