Wall clock time and date at job start Tue Mar 31 2020 21:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.29446 * 117.95715 * 2 1 4 4 C 1.50068 * 124.07398 * 180.48694 * 3 2 1 5 5 C 1.53031 * 110.14721 * 342.87238 * 4 3 2 6 6 C 1.52997 * 109.81528 * 169.22078 * 5 4 3 7 7 C 1.50698 * 109.64076 * 289.74961 * 5 4 3 8 8 O 1.21276 * 120.00512 * 117.09620 * 7 5 4 9 9 N 1.34784 * 119.99984 * 297.09876 * 7 5 4 10 10 C 1.46498 * 119.99966 * 354.04340 * 9 7 5 11 11 C 1.46493 * 119.99946 * 174.04354 * 9 7 5 12 12 C 1.53006 * 109.47005 * 89.99847 * 11 9 7 13 13 O 1.42904 * 109.47101 * 65.00100 * 12 11 9 14 14 C 1.42895 * 114.00021 * 180.02562 * 13 12 11 15 15 C 1.53001 * 109.47287 * 179.97438 * 14 13 12 16 16 N 1.46494 * 109.46906 * 64.99683 * 15 14 13 17 17 C 1.46507 * 120.00287 * 270.00088 * 16 15 14 18 18 C 1.36941 * 120.00202 * 90.00244 * 16 15 14 19 19 H 1.08000 * 119.99957 * 336.74618 * 18 16 15 20 20 C 1.38812 * 120.00150 * 157.01428 * 18 16 15 21 21 N 1.31618 * 120.00183 * 345.43980 * 20 18 16 22 22 Si 1.86806 * 119.99869 * 165.43821 * 20 18 16 23 23 H 1.48500 * 109.47000 * 60.00067 * 22 20 18 24 24 H 1.48497 * 109.47172 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47054 * 300.00394 * 22 20 18 26 26 C 1.53389 * 108.43941 * 49.43350 * 5 4 3 27 27 C 1.50065 * 117.96632 * 180.02562 * 2 1 3 28 28 H 1.09002 * 109.47361 * 269.97822 * 1 2 3 29 29 H 1.08997 * 109.47183 * 29.98284 * 1 2 3 30 30 H 1.09000 * 109.46795 * 149.97815 * 1 2 3 31 31 H 1.07994 * 117.96530 * 0.51649 * 3 2 1 32 32 H 1.08996 * 109.36193 * 222.66505 * 4 3 2 33 33 H 1.09003 * 109.35929 * 103.07692 * 4 3 2 34 34 H 1.09007 * 109.47230 * 180.52825 * 6 5 4 35 35 H 1.08997 * 109.47452 * 300.52529 * 6 5 4 36 36 H 1.08999 * 109.47352 * 60.53181 * 6 5 4 37 37 H 1.09007 * 109.47063 * 264.81393 * 10 9 7 38 38 H 1.09005 * 109.47282 * 24.81238 * 10 9 7 39 39 H 1.08990 * 109.47239 * 144.81452 * 10 9 7 40 40 H 1.09001 * 109.47626 * 330.00270 * 11 9 7 41 41 H 1.09001 * 109.47178 * 209.99695 * 11 9 7 42 42 H 1.09001 * 109.47254 * 304.99874 * 12 11 9 43 43 H 1.08998 * 109.47011 * 185.00097 * 12 11 9 44 44 H 1.09004 * 109.47503 * 59.99659 * 14 13 12 45 45 H 1.09008 * 109.46976 * 299.99925 * 14 13 12 46 46 H 1.09000 * 109.46964 * 304.99969 * 15 14 13 47 47 H 1.09003 * 109.47217 * 184.99730 * 15 14 13 48 48 H 1.09004 * 109.46880 * 264.70843 * 17 16 15 49 49 H 1.08997 * 109.46669 * 24.70774 * 17 16 15 50 50 H 1.09002 * 109.46983 * 144.71317 * 17 16 15 51 51 H 0.96996 * 120.00083 * 179.97438 * 21 20 18 52 52 H 1.08998 * 109.64097 * 52.24733 * 26 5 4 53 53 H 1.08993 * 109.64499 * 172.67033 * 26 5 4 54 54 H 1.08996 * 109.35690 * 42.63947 * 27 2 1 55 55 H 1.09004 * 109.35898 * 283.06109 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1138 1.1434 0.0000 4 6 3.6059 1.3033 -0.0106 5 6 4.2795 -0.0073 0.4023 6 6 5.7834 0.0755 0.1340 7 6 4.0396 -0.2602 1.8684 8 8 3.4115 -1.2360 2.2207 9 7 4.5230 0.5982 2.7882 10 6 5.3905 1.7036 2.3740 11 6 4.1809 0.4258 4.2022 12 6 5.2195 -0.4764 4.8719 13 8 6.4909 0.1760 4.8674 14 6 7.5373 -0.5860 5.4725 15 6 8.8455 0.2052 5.4110 16 7 8.7237 1.4144 6.2289 17 6 8.2295 2.6570 5.6305 18 6 9.0717 1.3833 7.5530 19 1 9.0718 0.4460 8.0895 20 6 9.4189 2.5574 8.2072 21 7 9.6933 3.6413 7.5127 22 14 9.4968 2.5990 10.0731 23 1 10.5002 1.6130 10.5488 24 1 9.8888 3.9592 10.5220 25 1 8.1641 2.2576 10.6319 26 6 3.6703 -1.1471 -0.4240 27 6 2.2107 -1.3254 -0.0006 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3633 0.8901 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 1.5088 2.0379 0.0086 32 1 3.8899 2.0909 0.6874 33 1 3.9329 1.5772 -1.0137 34 1 6.2560 -0.8639 0.4212 35 1 5.9538 0.2584 -0.9269 36 1 6.2121 0.8908 0.7167 37 1 6.4338 1.4081 2.4856 38 1 5.1922 1.9500 1.3309 39 1 5.1912 2.5751 2.9974 40 1 3.1951 -0.0321 4.2844 41 1 4.1722 1.3979 4.6951 42 1 5.2914 -1.4162 4.3244 43 1 4.9176 -0.6770 5.8998 44 1 7.6573 -1.5279 4.9371 45 1 7.2838 -0.7892 6.5130 46 1 9.0528 0.4847 4.3780 47 1 9.6606 -0.4103 5.7915 48 1 9.0744 3.2717 5.3199 49 1 7.6127 2.4222 4.7631 50 1 7.6340 3.2015 6.3633 51 1 9.9356 4.4617 7.9698 52 1 3.7162 -0.8964 -1.4837 53 1 4.2233 -2.0683 -0.2411 54 1 1.7120 -1.9989 -0.6975 55 1 2.1749 -1.7540 1.0010 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316767530.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:54 Heat of formation + Delta-G solvation = -44.558955 kcal Electronic energy + Delta-G solvation = -31609.505107 eV Core-core repulsion = 27647.755200 eV Total energy + Delta-G solvation = -3961.749907 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.08032 -39.30711 -38.44725 -37.21371 -36.64992 -35.01170 -33.46011 -31.88625 -31.06490 -29.86372 -29.34995 -27.78275 -27.75971 -25.63646 -24.93300 -24.56554 -24.14798 -22.50026 -22.11162 -20.13409 -18.99423 -18.70803 -17.76670 -17.32548 -17.09896 -16.66523 -16.47149 -16.20258 -15.95666 -15.61201 -15.35823 -15.23568 -15.15249 -14.85614 -14.55225 -14.22868 -14.13255 -13.96757 -13.73622 -13.47733 -13.35479 -13.26350 -13.21916 -13.11893 -12.94652 -12.76294 -12.66086 -12.57355 -12.52139 -12.43925 -12.33115 -12.19451 -12.09443 -11.94122 -11.81658 -11.75200 -11.15210 -11.05567 -10.62017 -10.47445 -10.24366 -9.65771 -9.42416 -8.70811 -7.78268 -5.26757 1.38976 1.46447 1.48880 1.55281 1.68288 2.07108 2.52869 2.87487 3.33532 3.45633 3.62740 3.74060 3.76516 4.03319 4.12496 4.16016 4.21012 4.24089 4.35126 4.39481 4.47852 4.51259 4.53683 4.58682 4.60727 4.62404 4.67199 4.68821 4.75963 4.78935 4.81387 4.84464 4.91098 4.92230 4.97201 5.00881 5.06950 5.07961 5.10683 5.15563 5.20124 5.26812 5.33551 5.44754 5.46327 5.60645 5.66294 5.77068 5.83224 6.16899 6.36141 6.38311 6.51642 7.19914 7.25307 7.93077 8.38157 9.23696 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.022677 B = 0.002432 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.425365 B =11510.025236 C =11565.549226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.126 4.126 3 C -0.180 4.180 4 C -0.083 4.083 5 C -0.075 4.075 6 C -0.160 4.160 7 C 0.523 3.477 8 O -0.570 6.570 9 N -0.602 5.602 10 C 0.063 3.937 11 C 0.125 3.875 12 C 0.050 3.950 13 O -0.380 6.380 14 C 0.056 3.944 15 C 0.151 3.849 16 N -0.612 5.612 17 C 0.191 3.809 18 C -0.262 4.262 19 H 0.066 0.934 20 C -0.053 4.053 21 N -0.937 5.937 22 Si 0.965 3.035 23 H -0.275 1.275 24 H -0.294 1.294 25 H -0.282 1.282 26 C -0.089 4.089 27 C -0.106 4.106 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.111 0.889 32 H 0.091 0.909 33 H 0.106 0.894 34 H 0.048 0.952 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.057 0.943 38 H 0.112 0.888 39 H 0.070 0.930 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.038 0.962 43 H 0.051 0.949 44 H 0.053 0.947 45 H 0.029 0.971 46 H 0.053 0.947 47 H 0.063 0.937 48 H -0.002 1.002 49 H 0.036 0.964 50 H 0.003 0.997 51 H 0.247 0.753 52 H 0.085 0.915 53 H 0.058 0.942 54 H 0.069 0.931 55 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.128 -6.148 -19.640 25.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.126 4.126 3 C -0.198 4.198 4 C -0.120 4.120 5 C -0.078 4.078 6 C -0.217 4.217 7 C 0.313 3.687 8 O -0.450 6.450 9 N -0.333 5.333 10 C -0.078 4.078 11 C 0.002 3.998 12 C -0.028 4.028 13 O -0.300 6.300 14 C -0.023 4.023 15 C 0.025 3.975 16 N -0.335 5.335 17 C 0.046 3.954 18 C -0.392 4.392 19 H 0.084 0.916 20 C -0.248 4.248 21 N -0.583 5.583 22 Si 0.793 3.207 23 H -0.201 1.201 24 H -0.220 1.220 25 H -0.209 1.209 26 C -0.127 4.127 27 C -0.143 4.143 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.129 0.871 32 H 0.109 0.891 33 H 0.124 0.876 34 H 0.067 0.933 35 H 0.108 0.892 36 H 0.103 0.897 37 H 0.075 0.925 38 H 0.130 0.870 39 H 0.088 0.912 40 H 0.109 0.891 41 H 0.107 0.893 42 H 0.056 0.944 43 H 0.070 0.930 44 H 0.071 0.929 45 H 0.047 0.953 46 H 0.071 0.929 47 H 0.082 0.918 48 H 0.017 0.983 49 H 0.055 0.945 50 H 0.022 0.978 51 H 0.056 0.944 52 H 0.104 0.896 53 H 0.077 0.923 54 H 0.088 0.912 55 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -15.367 -6.287 -19.478 25.595 hybrid contribution 0.101 -0.159 1.653 1.663 sum -15.266 -6.446 -17.826 24.338 Atomic orbital electron populations 1.20943 0.92057 1.02867 1.01746 1.21087 0.96431 0.95171 0.99923 1.21977 0.96314 0.97404 1.04122 1.20785 0.92294 0.95101 1.03792 1.20845 0.98303 0.98595 0.90028 1.22317 0.91615 1.03322 1.04416 1.21025 0.77333 0.81438 0.88948 1.90492 1.42565 1.29605 1.82359 1.47756 1.49284 1.29802 1.06482 1.22534 0.94025 0.88623 1.02649 1.21445 0.96795 1.00793 0.80810 1.22841 0.85074 0.95659 0.99183 1.87910 1.17166 1.44555 1.80339 1.23178 0.89393 0.94218 0.95554 1.20923 0.93503 0.88255 0.94841 1.44014 1.74801 1.07423 1.07250 1.20384 0.94483 0.86625 0.93893 1.19440 1.38765 0.94177 0.86852 0.91586 1.25736 1.00288 0.96762 1.02037 1.70229 1.51361 1.01743 1.34994 0.85380 0.77913 0.76422 0.80959 1.20051 1.22026 1.20861 1.21433 0.95280 0.96748 0.99238 1.20832 0.94715 0.95140 1.03585 0.92429 0.91046 0.91555 0.87074 0.89075 0.87619 0.93329 0.89205 0.89737 0.92470 0.87005 0.91157 0.89059 0.89267 0.94412 0.93045 0.92929 0.95313 0.92861 0.91835 0.98343 0.94510 0.97768 0.94354 0.89642 0.92322 0.91212 0.89187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.89 9.87 71.24 0.70 -1.19 16 2 C -0.13 -2.39 5.65 -15.10 -0.09 -2.48 16 3 C -0.18 -3.09 9.09 27.04 0.25 -2.84 16 4 C -0.08 -1.22 4.47 29.66 0.13 -1.09 16 5 C -0.07 -1.36 0.51 -52.79 -0.03 -1.38 16 6 C -0.16 -2.47 8.10 71.98 0.58 -1.88 16 7 C 0.52 13.01 5.74 87.66 0.50 13.52 16 8 O -0.57 -17.61 12.74 -3.02 -0.04 -17.65 16 9 N -0.60 -14.44 2.83 -846.76 -2.40 -16.84 16 10 C 0.06 1.27 7.85 127.77 1.00 2.27 16 11 C 0.12 3.24 5.81 86.38 0.50 3.74 16 12 C 0.05 1.49 6.28 71.98 0.45 1.94 16 13 O -0.38 -13.15 8.68 -148.98 -1.29 -14.45 16 14 C 0.06 1.97 6.28 71.98 0.45 2.42 16 15 C 0.15 6.11 6.05 86.38 0.52 6.63 16 16 N -0.61 -30.94 2.88 -726.92 -2.10 -33.04 16 17 C 0.19 9.57 8.76 127.77 1.12 10.69 16 18 C -0.26 -14.51 9.65 84.03 0.81 -13.70 16 19 H 0.07 3.55 7.87 -2.91 -0.02 3.52 16 20 C -0.05 -3.01 5.07 84.86 0.43 -2.58 16 21 N -0.94 -55.99 10.80 21.65 0.23 -55.76 16 22 Si 0.96 45.51 29.58 68.60 2.03 47.54 16 23 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 24 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 25 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 26 C -0.09 -1.64 4.69 30.73 0.14 -1.49 16 27 C -0.11 -2.19 5.19 29.66 0.15 -2.04 16 28 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.07 0.94 7.90 -2.39 -0.02 0.92 16 30 H 0.07 0.95 8.03 -2.39 -0.02 0.93 16 31 H 0.11 1.69 7.81 -2.91 -0.02 1.66 16 32 H 0.09 1.25 5.17 -2.39 -0.01 1.24 16 33 H 0.11 1.10 8.11 -2.39 -0.02 1.09 16 34 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.08 1.27 4.12 -2.39 -0.01 1.26 16 37 H 0.06 1.32 7.41 -2.38 -0.02 1.30 16 38 H 0.11 1.63 2.95 -2.38 -0.01 1.62 16 39 H 0.07 1.41 7.97 -2.39 -0.02 1.40 16 40 H 0.09 2.34 7.51 -2.39 -0.02 2.33 16 41 H 0.09 2.25 7.94 -2.39 -0.02 2.23 16 42 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 45 H 0.03 1.10 8.14 -2.38 -0.02 1.08 16 46 H 0.05 2.02 8.07 -2.39 -0.02 2.00 16 47 H 0.06 2.51 8.04 -2.39 -0.02 2.49 16 48 H 0.00 -0.09 7.33 -2.38 -0.02 -0.11 16 49 H 0.04 1.59 7.23 -2.39 -0.02 1.57 16 50 H 0.00 0.19 7.39 -2.39 -0.02 0.18 16 51 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 52 H 0.09 1.24 8.12 -2.39 -0.02 1.22 16 53 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 54 H 0.07 1.26 8.09 -2.39 -0.02 1.24 16 55 H 0.09 2.42 5.21 -2.47 -0.01 2.41 16 Total: -1.00 -68.56 413.58 4.93 -63.63 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: 0.85 Total: 16.03 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: 7.64 Total: 10.53 kcal Atomic # 7 Polarization: -101.38 SS G_CDS: -4.26 Total: -105.64 kcal Atomic # 8 Polarization: -30.76 SS G_CDS: -1.33 Total: -32.10 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -68.56 4.93 -63.63 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316767530.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.072 kcal (2) G-P(sol) polarization free energy of solvation -68.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds