Wall clock time and date at job start Tue Mar 31 2020 22:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47312 * 2 1 4 4 N 1.46499 * 109.47236 * 180.02562 * 3 2 1 5 5 C 1.36933 * 120.00067 * 179.97438 * 4 3 2 6 6 H 1.08002 * 119.99921 * 0.02562 * 5 4 3 7 7 C 1.38816 * 120.00323 * 179.97438 * 5 4 3 8 8 N 1.31616 * 120.00078 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 119.99549 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.46864 * 90.00116 * 9 7 5 11 11 H 1.48506 * 109.46872 * 209.99779 * 9 7 5 12 12 H 1.48496 * 109.47222 * 329.99972 * 9 7 5 13 13 N 1.46494 * 109.47345 * 120.00020 * 2 1 3 14 14 C 1.34775 * 119.99944 * 304.26315 * 13 2 1 15 15 O 1.21283 * 120.00029 * 354.82840 * 14 13 2 16 16 C 1.50707 * 120.00296 * 174.83523 * 14 13 2 17 17 C 1.52995 * 109.47315 * 180.02562 * 16 14 13 18 18 C 1.53000 * 109.47081 * 179.97438 * 17 16 14 19 19 H 1.09002 * 110.27333 * 54.29956 * 18 17 16 20 20 C 1.54946 * 110.30926 * 176.38732 * 18 17 16 21 21 C 1.55412 * 100.89318 * 155.28891 * 20 18 17 22 22 C 1.52997 * 110.88258 * 207.75721 * 21 20 18 23 23 C 1.53003 * 110.93499 * 84.25113 * 21 20 18 24 24 C 1.54384 * 102.31113 * 325.99036 * 21 20 18 25 25 O 1.43244 * 107.58614 * 21.28480 * 24 21 20 26 26 C 1.52999 * 109.46835 * 240.00109 * 2 1 3 27 27 C 1.52998 * 117.50136 * 12.42193 * 26 2 1 28 28 C 1.53003 * 117.49904 * 303.75902 * 26 2 1 29 29 H 1.08999 * 109.46577 * 300.00061 * 1 2 3 30 30 H 1.09000 * 109.47114 * 60.00015 * 1 2 3 31 31 H 1.08994 * 109.47170 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47019 * 300.00044 * 3 2 1 33 33 H 1.08998 * 109.47058 * 59.99687 * 3 2 1 34 34 H 0.96999 * 119.99826 * 359.97438 * 4 3 2 35 35 H 0.96999 * 119.99835 * 179.97438 * 8 7 5 36 36 H 0.97005 * 120.00150 * 123.98159 * 13 2 1 37 37 H 1.08998 * 109.46377 * 299.99617 * 16 14 13 38 38 H 1.09003 * 109.47264 * 59.99470 * 16 14 13 39 39 H 1.09001 * 109.47037 * 299.99706 * 17 16 14 40 40 H 1.09003 * 109.47398 * 59.99539 * 17 16 14 41 41 H 1.09003 * 111.12393 * 273.27946 * 20 18 17 42 42 H 1.09001 * 111.12315 * 37.44064 * 20 18 17 43 43 H 1.09000 * 109.47286 * 174.38011 * 22 21 20 44 44 H 1.09005 * 109.47127 * 294.36683 * 22 21 20 45 45 H 1.08996 * 109.47510 * 54.37137 * 22 21 20 46 46 H 1.09001 * 109.47232 * 305.59683 * 23 21 20 47 47 H 1.09000 * 109.47114 * 65.59741 * 23 21 20 48 48 H 1.08996 * 109.47012 * 185.59574 * 23 21 20 49 49 H 1.09000 * 109.83195 * 261.77752 * 24 21 20 50 50 H 1.08997 * 109.90792 * 140.83980 * 24 21 20 51 51 H 1.09003 * 115.54774 * 158.09292 * 26 2 1 52 52 H 1.09000 * 117.49724 * 0.02562 * 27 26 2 53 53 H 1.08999 * 117.49743 * 145.02178 * 27 26 2 54 54 H 1.08995 * 117.49869 * 214.98179 * 28 26 2 55 55 H 1.08997 * 117.49658 * 0.02562 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1897 2.6283 -0.0013 6 1 3.6497 3.5637 -0.0009 7 6 5.5779 2.6284 -0.0013 8 7 6.2359 3.7682 -0.0024 9 14 6.5118 1.0106 -0.0012 10 1 6.7593 0.5818 -1.4013 11 1 7.8095 1.1882 0.6987 12 1 5.7093 -0.0243 0.6989 13 7 2.0184 -0.6906 1.1961 14 6 1.6235 -0.2824 2.4183 15 8 0.9399 0.7128 2.5338 16 6 2.0314 -1.0624 3.6416 17 6 1.4554 -0.3912 4.8900 18 6 1.8690 -1.1835 6.1318 19 1 2.9521 -1.3026 6.1604 20 6 1.3723 -0.4705 7.4147 21 6 1.2965 -1.6662 8.4046 22 6 0.2383 -1.4168 9.4811 23 6 2.6620 -1.9380 9.0393 24 6 0.8778 -2.8312 7.4822 25 8 1.2257 -2.4678 6.1410 26 6 2.0399 -0.7212 -1.2493 27 6 1.0258 -1.0223 -2.3546 28 6 1.5643 -2.1571 -1.4797 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 3.9900 0.6024 -0.0006 35 1 7.2059 3.7682 -0.0021 36 1 2.6227 -1.4442 1.1083 37 1 1.6487 -2.0803 3.5676 38 1 3.1189 -1.0872 3.7109 39 1 1.8376 0.6269 4.9642 40 1 0.3679 -0.3668 4.8205 41 1 2.0911 0.2761 7.7525 42 1 0.3892 -0.0255 7.2613 43 1 0.1340 -2.3071 10.1013 44 1 0.5437 -0.5750 10.1027 45 1 -0.7165 -1.1905 9.0066 46 1 3.4060 -2.0770 8.2549 47 1 2.9469 -1.0918 9.6645 48 1 2.6057 -2.8386 9.6505 49 1 -0.1979 -2.9918 7.5545 50 1 1.4074 -3.7399 7.7682 51 1 3.0569 -0.4730 -1.5532 52 1 -0.0046 -0.7062 -2.1920 53 1 1.3757 -0.9726 -3.3857 54 1 2.2682 -2.8534 -1.9355 55 1 0.8878 -2.5877 -0.7414 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318732338.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:49 Heat of formation + Delta-G solvation = -80.062357 kcal Electronic energy + Delta-G solvation = -30908.366349 eV Core-core repulsion = 26945.076899 eV Total energy + Delta-G solvation = -3963.289450 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.46575 -40.88230 -39.08996 -36.53360 -35.70436 -34.99128 -34.46366 -33.34047 -31.63576 -29.95371 -28.26785 -27.81464 -27.05677 -25.80942 -24.60248 -23.84511 -23.13901 -22.01534 -21.13352 -20.34869 -20.15044 -19.65832 -18.29364 -17.58828 -17.02786 -16.73561 -16.56666 -16.44545 -16.26752 -15.63891 -15.42560 -15.29012 -14.97516 -14.84234 -14.60274 -14.41100 -14.16542 -14.04633 -13.88113 -13.72574 -13.62334 -13.37112 -13.16199 -13.02569 -12.85469 -12.72101 -12.50826 -12.34319 -12.28015 -12.24888 -12.08051 -12.01103 -11.97359 -11.83794 -11.65640 -11.59730 -11.30856 -11.26061 -11.10276 -10.95983 -10.45579 -10.42430 -9.93258 -9.27196 -8.03889 -5.36563 1.31502 1.38099 1.45401 1.79199 2.19594 2.46183 2.85816 3.01837 3.26543 3.39959 3.53825 3.66205 3.72825 3.81952 3.84713 3.91732 4.01596 4.10996 4.14064 4.18266 4.28022 4.31496 4.36967 4.42640 4.52784 4.62915 4.72903 4.75322 4.75906 4.79143 4.82340 4.82424 4.84778 4.89453 4.96110 4.96577 4.99223 5.02899 5.04808 5.09588 5.13226 5.18841 5.25036 5.28466 5.31192 5.32438 5.41722 5.42900 5.69004 5.74661 6.10844 6.19238 6.71380 7.06238 7.41878 7.80829 8.05339 9.18504 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010433 B = 0.003033 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2683.021987 B = 9228.897569 C =10793.794221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.208 3.792 3 C 0.150 3.850 4 N -0.743 5.743 5 C -0.233 4.233 6 H 0.044 0.956 7 C -0.067 4.067 8 N -0.987 5.987 9 Si 0.959 3.041 10 H -0.274 1.274 11 H -0.294 1.294 12 H -0.248 1.248 13 N -0.711 5.711 14 C 0.510 3.490 15 O -0.573 6.573 16 C -0.129 4.129 17 C -0.095 4.095 18 C 0.085 3.915 19 H 0.076 0.924 20 C -0.144 4.144 21 C -0.097 4.097 22 C -0.134 4.134 23 C -0.138 4.138 24 C 0.054 3.946 25 O -0.395 6.395 26 C -0.182 4.182 27 C -0.165 4.165 28 C -0.152 4.152 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.021 0.979 33 H 0.021 0.979 34 H 0.367 0.633 35 H 0.258 0.742 36 H 0.408 0.592 37 H 0.114 0.886 38 H 0.099 0.901 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.088 0.912 42 H 0.076 0.924 43 H 0.069 0.931 44 H 0.064 0.936 45 H 0.056 0.944 46 H 0.051 0.949 47 H 0.064 0.936 48 H 0.070 0.930 49 H 0.072 0.928 50 H 0.076 0.924 51 H 0.091 0.909 52 H 0.110 0.890 53 H 0.100 0.900 54 H 0.108 0.892 55 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.736 -21.192 13.649 28.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.122 3.878 3 C 0.023 3.977 4 N -0.389 5.389 5 C -0.364 4.364 6 H 0.062 0.938 7 C -0.258 4.258 8 N -0.638 5.638 9 Si 0.785 3.215 10 H -0.200 1.200 11 H -0.221 1.221 12 H -0.172 1.172 13 N -0.363 5.363 14 C 0.298 3.702 15 O -0.452 6.452 16 C -0.169 4.169 17 C -0.133 4.133 18 C 0.028 3.972 19 H 0.094 0.906 20 C -0.182 4.182 21 C -0.097 4.097 22 C -0.191 4.191 23 C -0.195 4.195 24 C -0.023 4.023 25 O -0.316 6.316 26 C -0.201 4.201 27 C -0.202 4.202 28 C -0.189 4.189 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.039 0.961 33 H 0.039 0.961 34 H 0.201 0.799 35 H 0.067 0.933 36 H 0.244 0.756 37 H 0.132 0.868 38 H 0.118 0.882 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.107 0.893 42 H 0.095 0.905 43 H 0.088 0.912 44 H 0.083 0.917 45 H 0.075 0.925 46 H 0.070 0.930 47 H 0.083 0.917 48 H 0.089 0.911 49 H 0.090 0.910 50 H 0.094 0.906 51 H 0.110 0.890 52 H 0.128 0.872 53 H 0.119 0.881 54 H 0.126 0.874 55 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -13.276 -20.397 13.550 27.855 hybrid contribution 1.360 0.019 -0.073 1.362 sum -11.916 -20.379 13.477 27.183 Atomic orbital electron populations 1.22177 0.92970 1.03021 1.03028 1.19832 0.94352 0.89930 0.83671 1.21073 0.83076 0.95740 0.97858 1.42439 1.02081 1.03615 1.90737 1.18996 0.89881 0.86247 1.41255 0.93788 1.25554 0.96991 1.00606 1.02609 1.69907 1.07127 1.26871 1.59864 0.85352 0.77826 0.79961 0.78334 1.20040 1.22113 1.17222 1.45998 1.49841 1.35415 1.05006 1.21161 0.79023 0.84559 0.85414 1.90628 1.40554 1.27126 1.86909 1.21625 1.03251 1.00843 0.91196 1.21379 1.01372 0.98310 0.92234 1.22964 0.96823 0.82874 0.94554 0.90636 1.23434 1.02700 0.98084 0.93970 1.22134 0.97608 0.94096 0.95892 1.21743 0.97203 1.02613 0.97569 1.21834 0.94533 1.02594 1.00565 1.23395 1.00399 0.97378 0.81086 1.88372 1.79380 1.35920 1.27882 1.22321 1.00061 1.00429 0.97276 1.23197 0.99009 1.02425 0.95608 1.23050 1.03383 0.89763 1.02700 0.92423 0.90651 0.90375 0.96084 0.96096 0.79914 0.93325 0.75600 0.86751 0.88247 0.91470 0.91772 0.89293 0.90526 0.91182 0.91727 0.92490 0.92966 0.91654 0.91147 0.91014 0.90622 0.89034 0.87194 0.88111 0.87376 0.87508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.22 6.97 71.98 0.50 -3.72 16 2 C 0.21 6.49 0.54 3.60 0.00 6.49 16 3 C 0.15 6.49 5.03 86.38 0.43 6.92 16 4 N -0.74 -36.60 4.84 -343.45 -1.66 -38.26 16 5 C -0.23 -14.12 10.47 84.04 0.88 -13.24 16 6 H 0.04 2.99 8.06 -2.91 -0.02 2.97 16 7 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 8 N -0.99 -65.40 13.97 21.65 0.30 -65.10 16 9 Si 0.96 45.92 27.74 68.60 1.90 47.82 16 10 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 12 H -0.25 -10.45 6.52 99.48 0.65 -9.80 16 13 N -0.71 -20.45 4.72 -422.93 -2.00 -22.44 16 14 C 0.51 16.15 7.24 87.66 0.63 16.79 16 15 O -0.57 -22.70 12.22 -3.04 -0.04 -22.74 16 16 C -0.13 -3.13 5.63 29.85 0.17 -2.96 16 17 C -0.09 -2.34 4.24 30.59 0.13 -2.21 16 18 C 0.08 1.72 3.12 31.26 0.10 1.81 16 19 H 0.08 1.46 7.77 -2.39 -0.02 1.44 16 20 C -0.14 -2.46 5.54 32.09 0.18 -2.29 16 21 C -0.10 -1.32 0.94 -50.88 -0.05 -1.37 16 22 C -0.13 -1.45 8.50 71.98 0.61 -0.84 16 23 C -0.14 -1.65 8.46 71.98 0.61 -1.04 16 24 C 0.05 0.84 6.99 72.45 0.51 1.35 16 25 O -0.40 -8.39 10.74 -148.98 -1.60 -9.99 16 26 C -0.18 -4.86 4.84 -10.79 -0.05 -4.91 16 27 C -0.17 -3.45 9.63 30.62 0.29 -3.15 16 28 C -0.15 -2.81 9.81 30.62 0.30 -2.51 16 29 H 0.06 1.89 6.04 -2.39 -0.01 1.88 16 30 H 0.07 1.90 6.80 -2.39 -0.02 1.89 16 31 H 0.08 1.74 6.99 -2.39 -0.02 1.72 16 32 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.02 1.05 6.31 -2.39 -0.02 1.03 16 34 H 0.37 16.68 4.49 -92.71 -0.42 16.26 16 35 H 0.26 16.16 8.31 -92.71 -0.77 15.39 16 36 H 0.41 9.58 8.47 -92.70 -0.78 8.79 16 37 H 0.11 2.32 7.94 -2.39 -0.02 2.30 16 38 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.07 1.88 8.10 -2.39 -0.02 1.86 16 40 H 0.06 1.72 8.10 -2.39 -0.02 1.70 16 41 H 0.09 1.42 8.04 -2.39 -0.02 1.40 16 42 H 0.08 1.38 7.94 -2.39 -0.02 1.36 16 43 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 45 H 0.06 0.65 8.12 -2.39 -0.02 0.63 16 46 H 0.05 0.71 7.53 -2.39 -0.02 0.69 16 47 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 48 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 49 H 0.07 1.05 7.81 -2.39 -0.02 1.03 16 50 H 0.08 1.03 7.84 -2.39 -0.02 1.01 16 51 H 0.09 2.92 7.08 -2.39 -0.02 2.90 16 52 H 0.11 2.11 5.88 -2.39 -0.01 2.09 16 53 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 54 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 55 H 0.11 1.74 7.37 -2.39 -0.02 1.72 16 Total: -1.00 -77.23 418.57 2.24 -75.00 By element: Atomic # 1 Polarization: 44.57 SS G_CDS: -0.39 Total: 44.18 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: 5.72 Total: -8.47 kcal Atomic # 7 Polarization: -122.45 SS G_CDS: -3.36 Total: -125.80 kcal Atomic # 8 Polarization: -31.09 SS G_CDS: -1.64 Total: -32.73 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 1.90 Total: 47.82 kcal Total: -77.23 2.24 -75.00 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318732338.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.065 kcal (2) G-P(sol) polarization free energy of solvation -77.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds