Wall clock time and date at job start Tue Mar 31 2020 21:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47000 * 2 1 4 4 C 1.53006 * 109.46626 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47164 * 59.99702 * 4 3 2 6 6 O 1.42900 * 109.47084 * 60.00176 * 5 4 3 7 7 C 1.42902 * 114.00315 * 149.99838 * 6 5 4 8 8 C 1.50703 * 109.47340 * 179.97438 * 7 6 5 9 9 O 1.21284 * 119.99929 * 359.97438 * 8 7 6 10 10 N 1.34770 * 120.00081 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00393 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.46713 * 34.99234 * 11 10 8 13 13 C 1.52996 * 109.47374 * 155.00090 * 11 10 8 14 14 C 1.52999 * 109.46834 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47241 * 299.99268 * 14 13 11 16 16 H 1.08992 * 109.47291 * 300.00599 * 15 14 13 17 17 N 1.46496 * 109.47209 * 180.02562 * 15 14 13 18 18 C 1.36935 * 120.00159 * 155.00336 * 17 15 14 19 19 H 1.08006 * 119.99841 * 0.02562 * 18 17 15 20 20 C 1.38808 * 120.00532 * 180.02562 * 18 17 15 21 21 N 1.31620 * 120.00314 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 119.99668 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.46970 * 90.00108 * 22 20 18 24 24 H 1.48506 * 109.47179 * 210.00099 * 22 20 18 25 25 H 1.48494 * 109.47275 * 329.99813 * 22 20 18 26 26 C 1.53010 * 109.46494 * 60.00692 * 15 14 13 27 27 C 1.52999 * 109.46811 * 299.99571 * 26 15 14 28 28 C 1.53002 * 109.47415 * 300.00027 * 5 4 3 29 29 C 1.52996 * 109.46972 * 59.99860 * 28 5 4 30 30 H 1.09000 * 109.46866 * 60.00185 * 1 2 3 31 31 H 1.09001 * 109.47372 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47107 * 300.00294 * 1 2 3 33 33 H 1.09000 * 109.46866 * 119.99815 * 2 1 3 34 34 H 1.08993 * 109.47839 * 60.00073 * 3 2 1 35 35 H 1.09000 * 109.47160 * 299.99635 * 3 2 1 36 36 H 1.09001 * 109.46998 * 179.97438 * 4 3 2 37 37 H 1.09000 * 109.47050 * 299.99699 * 4 3 2 38 38 H 1.09001 * 109.47230 * 179.97438 * 5 4 3 39 39 H 1.08992 * 109.46841 * 300.00157 * 7 6 5 40 40 H 1.09004 * 109.46784 * 59.99917 * 7 6 5 41 41 H 0.97002 * 119.99965 * 0.02562 * 10 8 7 42 42 H 1.09004 * 109.47257 * 299.99680 * 13 11 10 43 43 H 1.09004 * 109.47278 * 60.00258 * 13 11 10 44 44 H 1.09000 * 109.47588 * 60.00052 * 14 13 11 45 45 H 1.09006 * 109.47308 * 180.02562 * 14 13 11 46 46 H 0.96999 * 120.00432 * 335.00692 * 17 15 14 47 47 H 0.96997 * 120.00119 * 179.97438 * 21 20 18 48 48 H 1.08992 * 109.47428 * 59.99990 * 26 15 14 49 49 H 1.09002 * 109.46416 * 180.02562 * 26 15 14 50 50 H 1.09004 * 109.47093 * 300.00151 * 27 26 15 51 51 H 1.08999 * 109.46988 * 180.02562 * 27 26 15 52 52 H 1.08992 * 109.46974 * 180.02562 * 28 5 4 53 53 H 1.08996 * 109.46550 * 300.00288 * 28 5 4 54 54 H 1.09000 * 109.47054 * 60.00300 * 29 28 5 55 55 H 1.09001 * 109.46997 * 180.02562 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0795 0.7213 -1.2501 6 8 3.6028 1.3951 -2.4166 7 6 4.4744 1.2923 -3.5444 8 6 3.8758 2.0345 -4.7113 9 8 2.8076 2.5958 -4.5895 10 7 4.5269 2.0737 -5.8907 11 6 3.9453 2.7957 -7.0250 12 1 3.4165 3.6770 -6.6621 13 6 5.0595 3.2268 -7.9807 14 6 4.4520 3.9813 -9.1649 15 6 3.4721 3.0674 -9.9035 16 1 4.0005 2.1860 -10.2666 17 7 2.8909 3.7897 -11.0378 18 6 2.4122 3.0972 -12.1178 19 1 2.4627 2.0184 -12.1331 20 6 1.8619 3.7815 -13.1928 21 7 1.4023 3.1158 -14.2311 22 14 1.7738 5.6472 -13.1659 23 1 3.0124 6.2099 -13.7613 24 1 0.5974 6.0986 -13.9519 25 1 1.6414 6.1164 -11.7633 26 6 2.3577 2.6363 -8.9477 27 6 2.9652 1.8818 -7.7634 28 6 3.5695 -0.7212 -1.2501 29 6 2.0395 -0.7211 -1.2495 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6768 1.9564 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 3.9335 2.4701 -0.0011 37 1 3.9338 0.9285 0.8891 38 1 5.1695 0.7216 -1.2508 39 1 5.4429 1.7261 -3.2956 40 1 4.6036 0.2429 -3.8093 41 1 5.3807 1.6239 -5.9884 42 1 5.7575 3.8783 -7.4547 43 1 5.5882 2.3454 -8.3436 44 1 3.9236 4.8628 -8.8018 45 1 5.2458 4.2881 -9.8461 46 1 2.8451 4.7585 -11.0239 47 1 1.0174 3.5940 -14.9821 48 1 1.8293 3.5177 -8.5845 49 1 1.6599 1.9848 -9.4737 50 1 3.4937 1.0003 -8.1267 51 1 2.1714 1.5742 -7.0827 52 1 3.9328 -1.2350 -2.1400 53 1 3.9331 -1.2351 -0.3604 54 1 1.6758 -0.2072 -2.1393 55 1 1.6761 -1.7488 -1.2490 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318987505.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:39 Heat of formation + Delta-G solvation = -129.244109 kcal Electronic energy + Delta-G solvation = -29937.075347 eV Core-core repulsion = 25971.653217 eV Total energy + Delta-G solvation = -3965.422131 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.16530 -40.29160 -39.26416 -37.30175 -36.41820 -34.66412 -33.01265 -32.67045 -31.71049 -31.67351 -30.02147 -28.07843 -26.87420 -25.15261 -23.71125 -23.58586 -22.50989 -22.11912 -21.52733 -21.07269 -20.51281 -19.58046 -18.23655 -17.68735 -17.12719 -16.88290 -16.56589 -16.52650 -16.07355 -15.63739 -15.26286 -15.13431 -15.03990 -14.90833 -14.79969 -14.53750 -14.36601 -13.92565 -13.89969 -13.65785 -13.54055 -13.37428 -13.12837 -13.11504 -12.90754 -12.57472 -12.43413 -12.37295 -12.32937 -12.28384 -12.06456 -12.00117 -11.97551 -11.79868 -11.48175 -11.38914 -11.21952 -11.20591 -10.91458 -10.90224 -10.74554 -10.36223 -10.02928 -9.29981 -8.01884 -5.34595 1.37408 1.40679 1.47809 1.62658 1.86715 2.48621 3.05023 3.28799 3.56625 3.72150 3.77705 3.80211 3.85311 3.88311 3.93198 4.20927 4.23321 4.24360 4.26912 4.31787 4.34669 4.36403 4.41955 4.52081 4.54264 4.57565 4.62038 4.65874 4.69278 4.76203 4.85556 4.90361 4.93592 4.96244 4.99356 5.10900 5.13194 5.14516 5.16692 5.22883 5.25493 5.30997 5.34678 5.39255 5.44941 5.47353 5.51745 5.59541 5.65942 5.78731 6.22944 6.24485 6.64442 7.09053 7.31551 7.86449 8.04874 9.19751 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.021216 B = 0.001880 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.427940 B =14886.949210 C =15401.568238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.088 4.088 3 C -0.112 4.112 4 C -0.114 4.114 5 C 0.082 3.918 6 O -0.384 6.384 7 C 0.046 3.954 8 C 0.506 3.494 9 O -0.577 6.577 10 N -0.708 5.708 11 C 0.153 3.847 12 H 0.063 0.937 13 C -0.105 4.105 14 C -0.118 4.118 15 C 0.175 3.825 16 H 0.049 0.951 17 N -0.754 5.754 18 C -0.225 4.225 19 H 0.056 0.944 20 C -0.069 4.069 21 N -0.985 5.985 22 Si 0.955 3.045 23 H -0.274 1.274 24 H -0.299 1.299 25 H -0.256 1.256 26 C -0.125 4.125 27 C -0.113 4.113 28 C -0.138 4.138 29 C -0.111 4.111 30 H 0.036 0.964 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.039 0.961 36 H 0.063 0.937 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.111 0.889 40 H 0.102 0.898 41 H 0.419 0.581 42 H 0.093 0.907 43 H 0.089 0.911 44 H 0.060 0.940 45 H 0.077 0.923 46 H 0.364 0.636 47 H 0.257 0.743 48 H 0.045 0.955 49 H 0.035 0.965 50 H 0.075 0.925 51 H 0.043 0.957 52 H 0.067 0.933 53 H 0.091 0.909 54 H 0.039 0.961 55 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.391 -7.050 34.438 37.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.106 4.106 3 C -0.150 4.150 4 C -0.151 4.151 5 C 0.025 3.975 6 O -0.303 6.303 7 C -0.034 4.034 8 C 0.293 3.707 9 O -0.455 6.455 10 N -0.361 5.361 11 C 0.049 3.951 12 H 0.082 0.918 13 C -0.143 4.143 14 C -0.156 4.156 15 C 0.067 3.933 16 H 0.067 0.933 17 N -0.396 5.396 18 C -0.357 4.357 19 H 0.074 0.926 20 C -0.260 4.260 21 N -0.636 5.636 22 Si 0.783 3.217 23 H -0.200 1.200 24 H -0.226 1.226 25 H -0.180 1.180 26 C -0.166 4.166 27 C -0.153 4.153 28 C -0.176 4.176 29 C -0.149 4.149 30 H 0.055 0.945 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.101 0.899 34 H 0.083 0.917 35 H 0.058 0.942 36 H 0.082 0.918 37 H 0.116 0.884 38 H 0.105 0.895 39 H 0.129 0.871 40 H 0.120 0.880 41 H 0.257 0.743 42 H 0.112 0.888 43 H 0.107 0.893 44 H 0.079 0.921 45 H 0.095 0.905 46 H 0.197 0.803 47 H 0.065 0.935 48 H 0.063 0.937 49 H 0.054 0.946 50 H 0.093 0.907 51 H 0.061 0.939 52 H 0.085 0.915 53 H 0.110 0.890 54 H 0.058 0.942 55 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 12.424 -6.730 34.405 37.194 hybrid contribution -0.548 0.695 -1.026 1.355 sum 11.876 -6.036 33.379 35.940 Atomic orbital electron populations 1.21841 0.95799 1.01738 1.01257 1.21121 0.95197 0.95852 0.98437 1.21483 0.95976 0.96533 1.00979 1.21658 0.95783 1.01005 0.96648 1.22379 0.98580 0.91721 0.84805 1.88072 1.46648 1.75424 1.20122 1.22362 0.94304 1.01190 0.85502 1.21020 0.84740 0.80299 0.84655 1.90735 1.23881 1.46707 1.84202 1.45803 1.25186 1.55203 1.09946 1.20834 0.94635 0.94140 0.85531 0.91829 1.21653 0.96523 1.01712 0.94441 1.21708 0.98589 0.98274 0.97056 1.20486 0.92151 0.94707 0.85937 0.93270 1.42854 1.73867 1.04820 1.18071 1.19036 1.30482 0.91740 0.94398 0.92586 1.25516 1.01484 1.02628 0.96340 1.69886 1.48381 1.36361 1.08989 0.85400 0.77218 0.80932 0.78167 1.20038 1.22584 1.18030 1.22020 0.99263 0.99240 0.96078 1.21763 0.98545 0.98957 0.95986 1.22037 0.95842 0.96378 1.03314 1.21467 0.96061 0.99791 0.97576 0.94470 0.92204 0.92137 0.89872 0.91704 0.94226 0.91811 0.88412 0.89539 0.87118 0.87990 0.74296 0.88803 0.89293 0.92144 0.90455 0.80285 0.93465 0.93655 0.94603 0.90671 0.93862 0.91452 0.89030 0.94250 0.91853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.19 71.98 0.66 -1.59 16 2 C -0.09 -1.24 2.72 -10.79 -0.03 -1.26 16 3 C -0.11 -1.79 5.06 30.60 0.15 -1.63 16 4 C -0.11 -1.36 5.66 30.60 0.17 -1.18 16 5 C 0.08 0.99 2.92 30.59 0.09 1.07 16 6 O -0.38 -7.54 8.17 -129.94 -1.06 -8.60 16 7 C 0.05 0.64 6.23 71.24 0.44 1.08 16 8 C 0.51 11.43 7.87 87.66 0.69 12.12 16 9 O -0.58 -20.12 16.16 15.99 0.26 -19.86 16 10 N -0.71 -12.23 5.08 -442.53 -2.25 -14.48 16 11 C 0.15 3.58 2.45 44.99 0.11 3.70 16 12 H 0.06 1.85 7.58 -2.39 -0.02 1.83 16 13 C -0.10 -2.00 5.39 30.59 0.16 -1.84 16 14 C -0.12 -3.19 5.39 30.59 0.16 -3.02 16 15 C 0.17 6.44 2.77 45.00 0.12 6.57 16 16 H 0.05 1.88 8.08 -2.39 -0.02 1.86 16 17 N -0.75 -35.38 4.93 -322.94 -1.59 -36.97 16 18 C -0.23 -13.00 10.41 84.03 0.87 -12.12 16 19 H 0.06 3.54 8.06 -2.91 -0.02 3.51 16 20 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 21 N -0.99 -64.20 13.97 21.65 0.30 -63.90 16 22 Si 0.96 46.47 27.74 68.60 1.90 48.37 16 23 H -0.27 -12.82 7.11 99.48 0.71 -12.12 16 24 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 25 H -0.26 -11.37 6.52 99.48 0.65 -10.73 16 26 C -0.13 -4.56 5.50 30.60 0.17 -4.39 16 27 C -0.11 -3.25 5.50 30.60 0.17 -3.08 16 28 C -0.14 -1.49 5.63 30.59 0.17 -1.32 16 29 C -0.11 -1.72 5.06 30.59 0.15 -1.56 16 30 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 33 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.04 0.91 7.68 -2.39 -0.02 0.90 16 36 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.09 0.58 7.79 -2.39 -0.02 0.56 16 39 H 0.11 0.78 8.08 -2.39 -0.02 0.76 16 40 H 0.10 0.89 7.87 -2.38 -0.02 0.87 16 41 H 0.42 3.67 8.60 -92.71 -0.80 2.88 16 42 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 46 H 0.36 16.47 5.66 -92.71 -0.52 15.95 16 47 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 48 H 0.04 1.71 8.14 -2.39 -0.02 1.70 16 49 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 50 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 51 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 52 H 0.07 0.67 7.87 -2.39 -0.02 0.65 16 53 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 54 H 0.04 0.87 7.68 -2.39 -0.02 0.85 16 55 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -80.71 421.70 1.78 -78.93 By element: Atomic # 1 Polarization: 29.15 SS G_CDS: -0.53 Total: 28.61 kcal Atomic # 6 Polarization: -16.86 SS G_CDS: 4.75 Total: -12.11 kcal Atomic # 7 Polarization: -111.81 SS G_CDS: -3.54 Total: -115.34 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -0.80 Total: -28.46 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 1.90 Total: 48.37 kcal Total: -80.71 1.78 -78.93 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318987505.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.312 kcal (2) G-P(sol) polarization free energy of solvation -80.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds